EsuBft199_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft199_3a-0001
Unique Name	EsuBft199_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:768823..770775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft199_3
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1953
Hectar predicted targeting category	other localisation
Evalue	1.26e-215
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft199_3a	EsuBft199_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 768823..770775 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_3a-0001-exon	EsuBft199_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 768823..770775 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_3a-0001-exon	agat-five_prime_utr-4920	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_499 768823..768857 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_3a-0001-cds	EsuBft199_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 768858..770597 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_3a-0001-exon	agat-three_prime_utr-7578	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 770598..770775 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_3a-0001	EsuBft199_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 768858..770597 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:768823..770775+
coding sequence from alignment at Scaffold_499:768823..770775+

spliced messenger RNA

>EsuBft199_3a-0001 ID=EsuBft199_3a-0001|Name=EsuBft199_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1953bp|location=Sequence derived from alignment at Scaffold_499:768823..770775+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTTATGAAAGGAGACAAG
ACTGACCCAGGAAACTACAGGGGGATCACACTTTTGAACACAGTAGGAAA
AGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGG
AACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGC
GTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGC
GGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACA
CCGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAG
GGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGC
GGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGG
TCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAAC
GATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGA
CACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTA
TGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAG
TTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCAT
GGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGG
GGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAG
ATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAA
GGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACC
TCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCG
CTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGA
ACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCA
GGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTA
CGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGG
GATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAA
ACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGAC
GTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGG
TCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAG
AACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTAC
GGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAAT
GGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCC
TTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAG
TTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGC
GGAATGTCCGTGGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGG
GAAAATTAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAG
GAAAGGACGGTAGCTGTACTGGGGCATCGGAGGTGGGTTGAAAAGGCGGG
AAGGGATATCGTTAGGATACAATGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCC

protein sequence of EsuBft199_3a-0001

>EsuBft199_3 ID=EsuBft199_3|Name=EsuBft199_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=580bp
MKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFR
KKRGCVDHVFTVGRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLS
KYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLF
QVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGLQLQI
DAAKKFTDKWRLSANVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYT
YLGVEIAKDCSWNAHMSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKS
VIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAEL
GIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWV
KVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKE
GLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVD
EEDDEFKCDCGFECEDRVHVVAECPWYKKEREVYVTELGKLDGTYREMFE
AWNREERTVAVLGHRRWVEKAGRDIVRIQX

mRNA from alignment at Scaffold_499:768823..770775+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft199_3a-0001 ID=EsuBft199_3a-0001|Name=EsuBft199_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1953bp|location=Sequence derived from alignment at Scaffold_499:768823..770775+ (Ectocarpus subulatus male Bft15b)
GTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTTATGAAAGGAGACAAG
ACTGACCCAGGAAACTACAGGGGGATCACACTTTTGAACACAGTAGGAAA
AGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGG
AACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGC
GTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGC
GGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACA
CCGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAG
GGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGC
GGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGG
TCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAAC
GATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGA
CACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTA
TGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAG
TTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCAT
GGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGG
GGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAG
ATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAA
GGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACC
TCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCG
CTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGA
ACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCA
GGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTA
CGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGG
GATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAA
ACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGAC
GTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGG
TCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAG
AACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTAC
GGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAAT
GGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCC
TTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAG
TTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGC
GGAATGTCCGTGGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGG
GAAAATTAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAG
GAAAGGACGGTAGCTGTACTGGGGCATCGGAGGTGGGTTGAAAAGGCGGG
AAGGGATATCGTTAGGATACAATGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCC

Coding sequence (CDS) from alignment at Scaffold_499:768823..770775+

>EsuBft199_3a-0001 ID=EsuBft199_3a-0001|Name=EsuBft199_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1740bp|location=Sequence derived from alignment at Scaffold_499:768823..770775+ (Ectocarpus subulatus male Bft15b)
ATGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACACTTTT
GAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGG
GAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGC
AAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCA
AGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGA
AAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAACTGTCC
AAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGA
GTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCG
ACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTC
CAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGG
AGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGG
ATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATT
GACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCA
GAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAAC
ATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACA
TACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTC
CAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATAC
TCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGC
GTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAA
GAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCA
TCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTG
GGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCA
GTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGG
AGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTC
AAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAAC
GCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTT
GTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAG
GGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTA
CCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGA
CCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGAC
GAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCG
TGTTCATGTAGTCGCGGAATGTCCGTGGTACAAGAAGGAGAGGGAAGTGT
ACGTGACTGAGCTGGGAAAATTAGATGGAACGTACAGGGAGATGTTTGAG
GCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATCGGAGGTG
GGTTGAAAAGGCGGGAAGGGATATCGTTAGGATACAATGN