EsuBft1232_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1232_5a-0001
Unique NameEsuBft1232_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:427567..429557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1232_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length101
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1232_5aEsuBft1232_5aEctocarpus subulatus male Bft15bgeneScaffold_499 427567..429557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1232_5a-0001EsuBft1232_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 427776..428467 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1232_5a-0001-exonagat-exon-44430Ectocarpus subulatus male Bft15bexonScaffold_499 427567..428158 -
EsuBft1232_5a-0001-exonEsuBft1232_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 428395..428504 -
EsuBft1232_5a-0001-exonagat-exon-44431Ectocarpus subulatus male Bft15bexonScaffold_499 429244..429557 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1232_5a-0001-exonagat-three_prime_utr-2211Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 427567..427775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1232_5a-0001-cdsEsuBft1232_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 427776..428158 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1232_5a-0001-exonagat-five_prime_utr-1462Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 428468..428504 -
EsuBft1232_5a-0001-exonagat-five_prime_utr-1463Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 429244..429557 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1232_5a-0001 ID=EsuBft1232_5a-0001|Name=EsuBft1232_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1016bp|location=Sequence derived from alignment at Scaffold_499:427567..429557- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCTCGGGTGAGAGAGTACAGGATTAGATCTTTGGTGGATCTTGTCACAC
ATACCAGATCGCACCAGCTGTGTCGGCGGATCGGCCTTGTTTGACTTGGG
GGACTGGTGTGTGGTGCCCTCTTTGTGCCGAAGCGTACTCCTTCAACCAA
AAAGCTTGCGTAGCGGCGACTAGAAGAGAGGATTTGTCACGATCTTCGTC
GATTTCTCACTGTTACCTCAACCAACAAGAGCCACTAAATGCCTCCGCGA
ATCACTTAGTTTTCTCCTCATGTATCGCAGTTTTGAACGTCGACCTTTGC
GAGTTTGACGCGAGGCGTAACAAACCACACGTCGAAGGGATTCGTCGCGA
GATGGAGAGAAGGAAACCCGGGTTATGCGCGCACGATGGCTGCGGTATAT
ACGGATCACTCTCGAAACCTGGAGAGAAAAGACGGTTCTGCTTAGGGCAC
GCACAAGGAGACATGATGAAAATCCACAACAAAAAGTGTCAAGCATCAGG
TTGCAGTAAGCAACCGGTGTTCGGTAAGGAGGGCCAACAGGCGTCCATGT
GCGCGACGCACAAGTCGAACGGGATGAGGAACGTGAAGAACAGGACATGT
GCCGACCCCTCGTGCATGAAACAACCGTCATATGGCTTCAGTGGGGAGGC
AAAGAAGTTTTGTGCGCCGCACAAGCTCGACGGTATGATCAACATCAGGA
GTCAGCACAGCCGGCGATGTTCCTTCCCAGCTTGCACGAGGTCCCCGTTG
TCCGGCTTTCCGGGGGGCACAAACCGTCGCTGCTCTCGACACCAGAGGAG
GGCATGATCGCCGGTCCGACTCGGCAGGTCGGGAGAAAACGCTCAGCCAA
GAGCGGGGAACAGAGCGCAAAACCGGTCGTGTCGCCCGCGGCCCCTTCCG
ACGAAAGCTACGACAACACTGAAGAGGCGGCCAGGGACTGGGGTACGCAG
CCTAAGAGGAAACGCGTGGCCGAGACCCCCACCCCCGCCTATGCCCCCGC
CCCCAACGACGCCGAG
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protein sequence of EsuBft1232_5a-0001

>EsuBft1232_5 ID=EsuBft1232_5|Name=EsuBft1232_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MERRKPGLCAHDGCGIYGSLSKPGEKRRFCLGHAQGDMMKIHNKKCQASG
CSKQPVFGKEGQQASMCATHKSNGMRNVKNRTCADPSCMKQPSYGFSGEA
KKFCAPHKLDGMINIRSQHSRRCSFPACTRSPLSGFPGGTNRRCSRHQRR
A
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mRNA from alignment at Scaffold_499:427567..429557-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1232_5a-0001 ID=EsuBft1232_5a-0001|Name=EsuBft1232_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1991bp|location=Sequence derived from alignment at Scaffold_499:427567..429557- (Ectocarpus subulatus male Bft15b)
TTCTCGGGTGAGAGAGTACAGGATTAGATCTTTGGTGGATCTTGTCACAC
ATACCAGATCGCACCAGCTGTGTCGGCGGATCGGCCTTGTTTGACTTGGG
GGACTGGTGTGTGGTGCCCTCTTTGTGCCGAAGCGTACTCCTTCAACCAA
AAAGCTTGCGTAGCGGCGACTAGAAGAGAGGATTTGTCACGATCTTCGTC
GATTTCTCACTGTTACCTCAACCAACAAGAGCCACTAAATGCCTCCGCGA
ATCACTTAGTTTTCTCCTCATGTATCGCAGTTTTGAACGTCGACCTTTGC
GAGTTTGACGCGAGGTTCTGGTTGGAATATTGGAATACACATGAAAATAT
GTGATCAAGGTCTCATTTGTTACACATGTCATTTTGAAAAGCCCGACGAA
AAAAGTTGTTGCCCTTTTGGGCGAAAGGAGTACGAAAGAGAGAAACAACC
GAGAGGCTCCGCGGCTAGCTACCTCGCGTTCTCCATTCAAAATCGGGGAA
AATCCTAGTGAGAAGTCGATATTGTAATTCGTAGCGTTAAAAGCTCCAGA
GGTAATATGAGCCTTTTGACGAGGGGGGCTGTTTCAGCAGTGTATGCCTA
TCTGTTTGTGAGAAATGCACTGGCTGACTATCCATACACGTGTTGGGACA
CCTTAACGATGACTCGTGTGAAGGGATTGGCTACATTGTATTTATAAAGT
ACTGAGAGCTGCGTCCGACTTTGATAAGCGAATGTGTTTTACCTACAAGT
CGCTTCGCTCAAGCTTGTTTGCTAAAACAAATGATGTGTGTACGGTAAAA
AGCAGGTCATCTGGCATTTTGAAGGAAACTGCCTAAACAAAGGGTTTTTG
GCGCGGTAGCTCTGAGGCCATCGTCGCGTTTGACTAGACGGACCGAGACG
AGAAACCCATATATCACCGTGCTCAAGTGCACTCACTATAACGATATGGG
CCACGAAGGGCGGAGTTGGGCTAGTATTTAATGTACCAAGATGGCCCAAA
ACAATCATGATTCACACCACAATAATACCCCTGGTTTTGGTGCCTCAATT
CAGGCGTAACAAACCACACGTCGAAGGGATTCGTCGCGAGATGGAGAGAA
GGAAACCCGGGTTATGCGCGCACGATGGCTGCGGTATATACGGATCACTC
TCGAAACCTGGAGGTAAGTTGTACAAGTGAACCTCATAGCTGACGGTGCC
TTGTAGGCCCCAACACCGCTGGTGAAATTTGCGGCTTGTAAACCTCAGCA
TCGCCAGTGAAATTTCCGATGATTGGCGTCAGTAACTCCGGCGGTATATA
CTATATTTGCAACGGCATAACAGCTTGCAAACAATTACCACAACATGTTC
GACCCCCACATGTTCAACTTTAGTTCTTCCTCTGCTGCTTTTATTGCAGA
GAAAAGACGGTTCTGCTTAGGGCACGCACAAGGAGACATGATGAAAATCC
ACAACAAAAAGTGTCAAGCATCAGGTTGCAGTAAGCAACCGGTGTTCGGT
AAGGAGGGCCAACAGGCGTCCATGTGCGCGACGCACAAGTCGAACGGGAT
GAGGAACGTGAAGAACAGGACATGTGCCGACCCCTCGTGCATGAAACAAC
CGTCATATGGCTTCAGTGGGGAGGCAAAGAAGTTTTGTGCGCCGCACAAG
CTCGACGGTATGATCAACATCAGGAGTCAGCACAGCCGGCGATGTTCCTT
CCCAGCTTGCACGAGGTCCCCGTTGTCCGGCTTTCCGGGGGGCACAAACC
GTCGCTGCTCTCGACACCAGAGGAGGGCATGATCGCCGGTCCGACTCGGC
AGGTCGGGAGAAAACGCTCAGCCAAGAGCGGGGAACAGAGCGCAAAACCG
GTCGTGTCGCCCGCGGCCCCTTCCGACGAAAGCTACGACAACACTGAAGA
GGCGGCCAGGGACTGGGGTACGCAGCCTAAGAGGAAACGCGTGGCCGAGA
CCCCCACCCCCGCCTATGCCCCCGCCCCCAACGACGCCGAG
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Coding sequence (CDS) from alignment at Scaffold_499:427567..429557-

>EsuBft1232_5a-0001 ID=EsuBft1232_5a-0001|Name=EsuBft1232_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=456bp|location=Sequence derived from alignment at Scaffold_499:427567..429557- (Ectocarpus subulatus male Bft15b)
ATGGAGAGAAGGAAACCCGGGTTATGCGCGCACGATGGCTGCGGTATATA
CGGATCACTCTCGAAACCTGGAGAGAAAAGACGGTTCTGCTTAGGGCACG
CACAAGGAGACATGATGAAAATCCACAACAAAAAGTGTCAAGCATCAGGT
TGCAGTAAGCAACCGGTGTTCGGTAAGGAGGGCCAACAGGCGTCCATGTG
CGCGACGCACAAGTCGAACGGGATGAGGAACGTGAAGAACAGGACATGTG
CCGACCCCTCGTGCATGAAACAACCGTCATATGGCTTCAGTGGGGAGGCA
AAGAAGTTTTGTGCGCCGCACAAGCTCGACGGTATGATCAACATCAGGAG
TCAGCACAGCCGGCGATGTTCCTTCCCAGCTTGCACGAGGTCCCCGTTGT
CCGGCTTTCCGGGGGGCACAAACCGTCGCTGCTCTCGACACCAGAGGAGG
GCATGA
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