EsuBft1663_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1663_2a-0001
Unique NameEsuBft1663_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:349306..351515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1663_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length168
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_2aEsuBft1663_2aEctocarpus subulatus male Bft15bgeneScaffold_499 349306..351515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_2a-0001EsuBft1663_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 351322..351471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_2a-0001-exonagat-exon-25521Ectocarpus subulatus male Bft15bexonScaffold_499 349306..349436 -
EsuBft1663_2a-0001-exonagat-exon-25520Ectocarpus subulatus male Bft15bexonScaffold_499 349746..350748 -
EsuBft1663_2a-0001-exonEsuBft1663_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 350962..351515 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_2a-0001-exonagat-three_prime_utr-5614Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 349306..349436 -
EsuBft1663_2a-0001-exonagat-three_prime_utr-5615Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 349746..350748 -
EsuBft1663_2a-0001-exonagat-three_prime_utr-5616Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 350962..351321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_2a-0001-cdsEsuBft1663_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 351322..351471 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_2a-0001-exonagat-five_prime_utr-3640Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 351472..351515 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1663_2a-0001 ID=EsuBft1663_2a-0001|Name=EsuBft1663_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1688bp|location=Sequence derived from alignment at Scaffold_499:349306..351515- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGGTGGTTGAACCGGCCTCATTCGGCAAAAGAGGCTGCGCCGATGGTT
GAACCGGCCTCATCATCTGTGCCGCCTGTGGAAGCTTCCACAGCTGGTGT
AGTGGTGCAAGCGGCAAAAGCGGCATACGTGGCGACAATCGGCAGCGGTG
GCAGGTGGCGGGGGCGGAGCGTCTGTGGTGGGCGAGGAGGTTGAGGCTCA
AAGGGGAGGGCAGCCATCAGAGCCGGTGGTAGACAACACGTTGCCATCAT
CACCAGCGGCTGGTGAGGAGGAGGGGGAGAGGAAATAAGTAAAGCAGACC
ACCCCACCAACGCCTGCGGTAGACACAGTACAAGCACAGCAGCAGCAGCG
GCACCTGCCTCGCCCAACCACACTCTCGCCAGTGGCAGGGACAATACAAG
CAACACGCCTACGGTCGAGCCCGTTACCGTCACCTCCTTTTCGCAGCAGA
TGTGTTAGCGGTGGGAGCGGAGGCTAGCGGTGGTGGGGTCGGCGAAAAGA
GGGTCTGCGACGGCGGCGGTGGTTCGCGGATCAAGCGTGATGGGACTTCC
ACCGATTCATTGGTTAACAAGCGGCGCCTAGGAGCCTTCAACATCACTAA
GGATCGGTTTTGGTTTGCGTCTACACTTGAGCTGCAGCTGGCACTGGGCT
TGTGCTAGGCATGCCGAGGCTTCCCGGCGCTGAGGGTGTGGGTTGAAGAA
GAAACATCACCCACTTTACGGAGTTGTGTGGCTGGCGTCCATGCAGCGGC
TGTCGTTGGGGGGGCAGATTCAAGCAGCCCATCGGCGCCGAGGTGGTTTA
ACTCTTGTACCGTTTTGAAACAGGGGTGGTAGTTCGGGGACCCGCGCCTG
CATCACGCGGCCATTTTTCCGAATTTAGTATTCTGCCGGCTTGGAGCACA
GTGGCGCTCTTCGGGACATGTTGGTTCTATGCATTCAGGAACATCCGTCG
TCACAGATGGGTGTCATGTGATGCTGCGTTTCGGGGGGTCTCATCGCTGC
AGAAACAGGGAGCGTGCCAGGTTCCGTTTTTCTGCGATTCTTGCTGATCT
ATATATATTTCCTGCCTGTTGTCTGGGCTTATCTCATGCTTGTGTTTGTC
TGATTTTCTAACAACACACGGAGGGTGTCTCCGGTCGGTTGGATCAGTCC
GGATGAAGAGAGTATTGCGCAGAGATCGAGACCATTTTTAGGGAGAAGAC
ACCAACAACGCCCCAAACGAATTGTCGCGTTACAGTACGGGCCCCCGAAC
ACCCAACTACGCCACCAAACGGTGATGGGGAGAGCTATCGCCGAAAGAAA
CTGCCTAGAATCTCGACCAAAACCAAATCGCTTCTAGTGTCAAGCTTGCT
GCGCTCCCGCGACCTCCTTGGTCACCGCCCTTGGTTGTACACCCTCTTCC
CCCGCAGAGATACGGTTCTTAAAACAGGCCTTCTTGACTACCAATTCGCA
CTGAACAACACTACAGCAAGGCATGTCTATTAACAATGGTCGCAGCCGTT
CATCTTCTCCTCGACGGTGGCGATCTGGGCGAGGGGGCGGCGTAGCTTCC
AGCGCCTGTTTTCGTTCTGGCCTCGATCGATCGCAAACGTGGCGCAGCTT
CTATCACTTTAGCTTCCTCCTTGCATCGCTCCCTCCCTTCCCGCGGAGTC
TGGAAAACAAACACGGGGTCGGGCATTACACGGTGTTT
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protein sequence of EsuBft1663_2a-0001

>EsuBft1663_2 ID=EsuBft1663_2|Name=EsuBft1663_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MVEPASSSVPPVEASTAGVVVQAAKAAYVATIGSGGRWRGRSVCGGRGG
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mRNA from alignment at Scaffold_499:349306..351515-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1663_2a-0001 ID=EsuBft1663_2a-0001|Name=EsuBft1663_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2210bp|location=Sequence derived from alignment at Scaffold_499:349306..351515- (Ectocarpus subulatus male Bft15b)
GCCGGTGGTTGAACCGGCCTCATTCGGCAAAAGAGGCTGCGCCGATGGTT
GAACCGGCCTCATCATCTGTGCCGCCTGTGGAAGCTTCCACAGCTGGTGT
AGTGGTGCAAGCGGCAAAAGCGGCATACGTGGCGACAATCGGCAGCGGTG
GCAGGTGGCGGGGGCGGAGCGTCTGTGGTGGGCGAGGAGGTTGAGGCTCA
AAGGGGAGGGCAGCCATCAGAGCCGGTGGTAGACAACACGTTGCCATCAT
CACCAGCGGCTGGTGAGGAGGAGGGGGAGAGGAAATAAGTAAAGCAGACC
ACCCCACCAACGCCTGCGGTAGACACAGTACAAGCACAGCAGCAGCAGCG
GCACCTGCCTCGCCCAACCACACTCTCGCCAGTGGCAGGGACAATACAAG
CAACACGCCTACGGTCGAGCCCGTTACCGTCACCTCCTTTTCGCAGCAGA
TGTGTTAGCGGTGGGAGCGGAGGCTAGCGGTGGTGGGGTCGGCGAAAAGA
GGGTCTGCGACGGCGGCGGTGGTTCGCGGATCAAGCGTGATGGGACTTCC
ACCGGTAAGCAAAAAAGCAGGTGATTTTTAGTCTGTATTGACCTAGCATG
GAAATGTGGATGTGGCACTGAAGCATGTACGTTGCAATACACTTGATGCA
TGTACATATACAGGTCCTACACGTATCCCTCGCCTTTCTTCTCAACGCAT
CCCCGGAGGTGTCGAGTTCATGTTTGTTCTTCTCATGTCCTTCTCTTTTT
TCCCTCTCAAACGACAGATTCATTGGTTAACAAGCGGCGCCTAGGAGCCT
TCAACATCACTAAGGATCGGTTTTGGTTTGCGTCTACACTTGAGCTGCAG
CTGGCACTGGGCTTGTGCTAGGCATGCCGAGGCTTCCCGGCGCTGAGGGT
GTGGGTTGAAGAAGAAACATCACCCACTTTACGGAGTTGTGTGGCTGGCG
TCCATGCAGCGGCTGTCGTTGGGGGGGCAGATTCAAGCAGCCCATCGGCG
CCGAGGTGGTTTAACTCTTGTACCGTTTTGAAACAGGGGTGGTAGTTCGG
GGACCCGCGCCTGCATCACGCGGCCATTTTTCCGAATTTAGTATTCTGCC
GGCTTGGAGCACAGTGGCGCTCTTCGGGACATGTTGGTTCTATGCATTCA
GGAACATCCGTCGTCACAGATGGGTGTCATGTGATGCTGCGTTTCGGGGG
GTCTCATCGCTGCAGAAACAGGGAGCGTGCCAGGTTCCGTTTTTCTGCGA
TTCTTGCTGATCTATATATATTTCCTGCCTGTTGTCTGGGCTTATCTCAT
GCTTGTGTTTGTCTGATTTTCTAACAACACACGGAGGGTGTCTCCGGTCG
GTTGGATCAGTCCGGATGAAGAGAGTATTGCGCAGAGATCGAGACCATTT
TTAGGGAGAAGACACCAACAACGCCCCAAACGAATTGTCGCGTTACAGTA
CGGGCCCCCGAACACCCAACTACGCCACCAAACGGTGATGGGGAGAGCTA
TCGCCGAAAGAAACTGCCTAGAATCTCGACCAAAACCAAATCGCTTCTAG
TGTCAAGCTTGCTGCGCTCCCGCGACCTCCTTGGTCACCGCCCTTGGTTG
TACACCCTCTTCCCCCGCAGAGATACGGTTCTTAAAACAGGCCTTCTTGA
CTACCAATTCGCACTGAACAACACTACAGCAAGGCATGTCTATTAACAAT
GGTCGCAGCCGTTCATCTTCTCCTCGACGGTGGCGATCTGGGCGAGGGGG
CGGCGTAGCTTCCAGCGCCTGTTCGAATTCCAGCGAGCAACGCTAAATTG
TTTGAGTCGAGCTAATCGGGATCATTGAGCGCCGCCGAAACAGAGGGTGG
TACAGCAACGGTTGGCTAGCGATGGCGCACTTCCGGAGTCTGGTCGCCGG
TGAAATAGTCTGGTGCAAAGTGGTAGAGGCGGTGCCGATCGTCCAGTTCA
TGCTACTTTGGCGCGCTCCGGCTGGCCAAAACAAACTCAGTAATTTGTCG
GCCCAGCACTGCGCTGGCGGTGACTTGCCGTGGAAAATAGGAGGGGGGCG
CATCTGGTGTCAACTGGTCTCACCTGGAGGTTTTCGTTCTGGCCTCGATC
GATCGCAAACGTGGCGCAGCTTCTATCACTTTAGCTTCCTCCTTGCATCG
CTCCCTCCCTTCCCGCGGAGTCTGGAAAACAAACACGGGGTCGGGCATTA
CACGGTGTTT
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Coding sequence (CDS) from alignment at Scaffold_499:349306..351515-

>EsuBft1663_2a-0001 ID=EsuBft1663_2a-0001|Name=EsuBft1663_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_499:349306..351515- (Ectocarpus subulatus male Bft15b)
ATGGTTGAACCGGCCTCATCATCTGTGCCGCCTGTGGAAGCTTCCACAGC
TGGTGTAGTGGTGCAAGCGGCAAAAGCGGCATACGTGGCGACAATCGGCA
GCGGTGGCAGGTGGCGGGGGCGGAGCGTCTGTGGTGGGCGAGGAGGTTGA
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