EsuBft629_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft629_8a-0001
Unique Name	EsuBft629_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:240986..242305 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft629_8
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	132
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft629_8a	EsuBft629_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 240986..242305 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_8a-0001-exon	EsuBft629_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 240986..242305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_8a-0001-cds	EsuBft629_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 240986..242305 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_8a-0001	EsuBft629_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 240986..242305 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:240986..242305+
coding sequence from alignment at Scaffold_499:240986..242305+

spliced messenger RNA

>EsuBft629_8a-0001 ID=EsuBft629_8a-0001|Name=EsuBft629_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1320bp|location=Sequence derived from alignment at Scaffold_499:240986..242305+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCGACCATGCCGGCTCATGTCCCGCGTCGACGCCACCGTCTGCG
ACAAAGCACCGGTGAAAACCGCGGGAGCGACCAGGAGAAGCACCTTTCCA
ACGAACGCGGCAGAAGCGGCAACACGCACCGCCGGTCCGCCAACGACAGC
CGTGACTTGTCCAGCTCTGGATCGGAGGCAGACATCGGGAACCCCCATAA
CGACGGCGTGACTCCGGCCCGCTCCCACCGTTCCGCCAGAAGCATGGTGG
ACATGACGCCCGCGAGACCCCGCTCATTTCTGGGTGGTTCTGTCGCCGGG
CGCGCGCCGCCGCTTCCGCGAGGCTCGGCAAGAGATGGGTACTCTGACAC
GATCGGGTTTATCGTAGGTGATGGGTTGAAACCGGCCACGGCAGCAGTGG
ATAAGGGGTCGTCACGGCCGTTCATGAGCTCAGACGCGCCGCTCTCTTCG
CCGAAAAAAACGAAGGTCAACGAGGGTCCGGCACCAGGGCTGGACAAAAA
GGCGACCGCTGCTCCTGCTCCTGCCGACCCACCCGCTGTTGCTTCCGCTC
CTGTTGTTTCTCCTCTGGAACCGTCTCCTCACCCGTCGCCATCTCAGGCT
AACCCCGACGAGCTTGGCATCCCTGCCGGACGGGTGGCCAGCCTGGCCGC
CAGCACCAACAAGAAGGTGCGGGAGGGGATGAAGAACACGTTCGGGACGA
AGAAGGCAAACGTCCTCTCGGCGACAGTGGAGGAAACGAACGAGAACGAG
TGGAAGTTAGACCTCGCGGAGAATAAAGCCGTAGTCGCCAAGAATCAGGC
CTTGCAGTCACACACCTTGGTGTTGGCACAGGCGGCCGCTCAGACGGCAG
CGGCAGTATGGGCGCAACGGGAAGCCGAGTCGAAAGCGAAGCACGCAGCA
GCGGCGCAGGCCACCCGGCAGGAGGCGGAGGCTAGGATGCTCGAGGCCGA
GAAGGCGTTGGACAGGGCCAAGGCTATGCCCGCTGAGATGAGAGACCCCA
ACAGCAATGTTAGCACCACTACAAGCTGGCGTACGACGGACAAGGACGAG
GCCGATGACGACTACATGAGGTACTTGAGGGCGGGTAGTGACGGAAGTAC
GGAGCCAGGAGCCGATGAGCATAGAGTGCTGCGTCAGAGGCGGGGGAATT
GCTGGGAGTCCGCCGAGATGCTGTCTGAGGAAGAGGAGGAAAACGAGAAC
AACGGGAGGATGACGCCCCAGACGAGTGCTAACGACAACGCGGCGGCGGT
GTCGCGCGGAGAGGGGGAGCAGCGACAGACGTCAGCTATCCACACGGTGA
GTGTGAACACCACAGAGTGA

protein sequence of EsuBft629_8a-0001

>EsuBft629_8 ID=EsuBft629_8|Name=EsuBft629_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=439bp
MPATMPAHVPRRRHRLRQSTGENRGSDQEKHLSNERGRSGNTHRRSANDS
RDLSSSGSEADIGNPHNDGVTPARSHRSARSMVDMTPARPRSFLGGSVAG
RAPPLPRGSARDGYSDTIGFIVGDGLKPATAAVDKGSSRPFMSSDAPLSS
PKKTKVNEGPAPGLDKKATAAPAPADPPAVASAPVVSPLEPSPHPSPSQA
NPDELGIPAGRVASLAASTNKKVREGMKNTFGTKKANVLSATVEETNENE
WKLDLAENKAVVAKNQALQSHTLVLAQAAAQTAAAVWAQREAESKAKHAA
AAQATRQEAEARMLEAEKALDRAKAMPAEMRDPNSNVSTTTSWRTTDKDE
ADDDYMRYLRAGSDGSTEPGADEHRVLRQRRGNCWESAEMLSEEEEENEN
NGRMTPQTSANDNAAAVSRGEGEQRQTSAIHTVSVNTTE

mRNA from alignment at Scaffold_499:240986..242305+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft629_8a-0001 ID=EsuBft629_8a-0001|Name=EsuBft629_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1320bp|location=Sequence derived from alignment at Scaffold_499:240986..242305+ (Ectocarpus subulatus male Bft15b)
ATGCCGGCGACCATGCCGGCTCATGTCCCGCGTCGACGCCACCGTCTGCG
ACAAAGCACCGGTGAAAACCGCGGGAGCGACCAGGAGAAGCACCTTTCCA
ACGAACGCGGCAGAAGCGGCAACACGCACCGCCGGTCCGCCAACGACAGC
CGTGACTTGTCCAGCTCTGGATCGGAGGCAGACATCGGGAACCCCCATAA
CGACGGCGTGACTCCGGCCCGCTCCCACCGTTCCGCCAGAAGCATGGTGG
ACATGACGCCCGCGAGACCCCGCTCATTTCTGGGTGGTTCTGTCGCCGGG
CGCGCGCCGCCGCTTCCGCGAGGCTCGGCAAGAGATGGGTACTCTGACAC
GATCGGGTTTATCGTAGGTGATGGGTTGAAACCGGCCACGGCAGCAGTGG
ATAAGGGGTCGTCACGGCCGTTCATGAGCTCAGACGCGCCGCTCTCTTCG
CCGAAAAAAACGAAGGTCAACGAGGGTCCGGCACCAGGGCTGGACAAAAA
GGCGACCGCTGCTCCTGCTCCTGCCGACCCACCCGCTGTTGCTTCCGCTC
CTGTTGTTTCTCCTCTGGAACCGTCTCCTCACCCGTCGCCATCTCAGGCT
AACCCCGACGAGCTTGGCATCCCTGCCGGACGGGTGGCCAGCCTGGCCGC
CAGCACCAACAAGAAGGTGCGGGAGGGGATGAAGAACACGTTCGGGACGA
AGAAGGCAAACGTCCTCTCGGCGACAGTGGAGGAAACGAACGAGAACGAG
TGGAAGTTAGACCTCGCGGAGAATAAAGCCGTAGTCGCCAAGAATCAGGC
CTTGCAGTCACACACCTTGGTGTTGGCACAGGCGGCCGCTCAGACGGCAG
CGGCAGTATGGGCGCAACGGGAAGCCGAGTCGAAAGCGAAGCACGCAGCA
GCGGCGCAGGCCACCCGGCAGGAGGCGGAGGCTAGGATGCTCGAGGCCGA
GAAGGCGTTGGACAGGGCCAAGGCTATGCCCGCTGAGATGAGAGACCCCA
ACAGCAATGTTAGCACCACTACAAGCTGGCGTACGACGGACAAGGACGAG
GCCGATGACGACTACATGAGGTACTTGAGGGCGGGTAGTGACGGAAGTAC
GGAGCCAGGAGCCGATGAGCATAGAGTGCTGCGTCAGAGGCGGGGGAATT
GCTGGGAGTCCGCCGAGATGCTGTCTGAGGAAGAGGAGGAAAACGAGAAC
AACGGGAGGATGACGCCCCAGACGAGTGCTAACGACAACGCGGCGGCGGT
GTCGCGCGGAGAGGGGGAGCAGCGACAGACGTCAGCTATCCACACGGTGA
GTGTGAACACCACAGAGTGA

Coding sequence (CDS) from alignment at Scaffold_499:240986..242305+

>EsuBft629_8a-0001 ID=EsuBft629_8a-0001|Name=EsuBft629_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1320bp|location=Sequence derived from alignment at Scaffold_499:240986..242305+ (Ectocarpus subulatus male Bft15b)
ATGCCGGCGACCATGCCGGCTCATGTCCCGCGTCGACGCCACCGTCTGCG
ACAAAGCACCGGTGAAAACCGCGGGAGCGACCAGGAGAAGCACCTTTCCA
ACGAACGCGGCAGAAGCGGCAACACGCACCGCCGGTCCGCCAACGACAGC
CGTGACTTGTCCAGCTCTGGATCGGAGGCAGACATCGGGAACCCCCATAA
CGACGGCGTGACTCCGGCCCGCTCCCACCGTTCCGCCAGAAGCATGGTGG
ACATGACGCCCGCGAGACCCCGCTCATTTCTGGGTGGTTCTGTCGCCGGG
CGCGCGCCGCCGCTTCCGCGAGGCTCGGCAAGAGATGGGTACTCTGACAC
GATCGGGTTTATCGTAGGTGATGGGTTGAAACCGGCCACGGCAGCAGTGG
ATAAGGGGTCGTCACGGCCGTTCATGAGCTCAGACGCGCCGCTCTCTTCG
CCGAAAAAAACGAAGGTCAACGAGGGTCCGGCACCAGGGCTGGACAAAAA
GGCGACCGCTGCTCCTGCTCCTGCCGACCCACCCGCTGTTGCTTCCGCTC
CTGTTGTTTCTCCTCTGGAACCGTCTCCTCACCCGTCGCCATCTCAGGCT
AACCCCGACGAGCTTGGCATCCCTGCCGGACGGGTGGCCAGCCTGGCCGC
CAGCACCAACAAGAAGGTGCGGGAGGGGATGAAGAACACGTTCGGGACGA
AGAAGGCAAACGTCCTCTCGGCGACAGTGGAGGAAACGAACGAGAACGAG
TGGAAGTTAGACCTCGCGGAGAATAAAGCCGTAGTCGCCAAGAATCAGGC
CTTGCAGTCACACACCTTGGTGTTGGCACAGGCGGCCGCTCAGACGGCAG
CGGCAGTATGGGCGCAACGGGAAGCCGAGTCGAAAGCGAAGCACGCAGCA
GCGGCGCAGGCCACCCGGCAGGAGGCGGAGGCTAGGATGCTCGAGGCCGA
GAAGGCGTTGGACAGGGCCAAGGCTATGCCCGCTGAGATGAGAGACCCCA
ACAGCAATGTTAGCACCACTACAAGCTGGCGTACGACGGACAAGGACGAG
GCCGATGACGACTACATGAGGTACTTGAGGGCGGGTAGTGACGGAAGTAC
GGAGCCAGGAGCCGATGAGCATAGAGTGCTGCGTCAGAGGCGGGGGAATT
GCTGGGAGTCCGCCGAGATGCTGTCTGAGGAAGAGGAGGAAAACGAGAAC
AACGGGAGGATGACGCCCCAGACGAGTGCTAACGACAACGCGGCGGCGGT
GTCGCGCGGAGAGGGGGAGCAGCGACAGACGTCAGCTATCCACACGGTGA
GTGTGAACACCACAGAGTGA