EsuBft925_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft925_9a-0001
Unique Name	EsuBft925_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_491	contig	Scaffold_491:481256..483166 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft925_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	123
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft925_9a	EsuBft925_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_491 481256..483166 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft925_9a-0001-exon	EsuBft925_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_491 481256..482427 -
EsuBft925_9a-0001-exon	agat-exon-45101	Ectocarpus subulatus male Bft15b	exon	Scaffold_491 483104..483166 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft925_9a-0001-exon	agat-three_prime_utr-23124	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_491 481256..482381 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft925_9a-0001-cds	EsuBft925_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_491 482382..482427 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft925_9a-0001-exon	agat-five_prime_utr-15035	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_491 483139..483166 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft925_9a-0001	EsuBft925_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_491 482382..483138 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_491:481256..483166-
coding sequence from alignment at Scaffold_491:481256..483166-

spliced messenger RNA

>EsuBft925_9a-0001 ID=EsuBft925_9a-0001|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1235bp|location=Sequence derived from alignment at Scaffold_491:481256..483166- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCGCCAATGGCACCACGCAGCCATGGAGGGTGCCGGAATGAGTT
CGATGGAAGGCAAGCCTCCGGACGACATCAATAAGTGGAATAACAAAGGC
CGGGGTTAGGACGGTTGGGTTCGACTCCCCTCCAATCCAACCTAGCAAAG
ACAATGCCTGGCCGACGCGTCCTTTTTATACCGCTCCGTTTGGTGCCGGC
TGGGCGTCTACCATGCTGTTTCCCACCTTGTGCATTGCCGCTAGCCACAG
TTATGACGGTCTTGCCGTAGGCGAGCTGCTTTGCCTTGATGCTGTGCCTC
TTGTTGCAAAGAGTGCTGTAGTACATGGTAGATCGCGATTGATCGTCTTT
GTGCCGGTTTCGTCTCAGCCAACGATTCCCACTCTGCTGCAAAGGCGCCA
ACCGATGAAATATTGTCGTGCGTTCCATTTCATTCCGTCATTTGGCAGTA
TCACGTCGATGTGGGGAAATGTTTCAGAGACTAAGGCTTACACCCTTTTT
CGGGAACGACTGTGTTTTCAACACGAAACGAGTCGAGGTATTCCCAAAGA
CCGGACTTGCGGGTTACAAGTTTGGAAGGGTTCGAGCCCATGGAAGGGCC
TGTCGGTTGAATCGGAATATGTTATCGTTGATTTATGGCGACCTCTTCAA
TCTTGTCGACCTCCCCTCTGTCTCGTTTAGTTCTTCCTATGTTGACCCGG
CTTGCCCTTAGGCTTGGCGACGAACTCCACGCGATGGGGGGCCAAGTGGG
TGACCGTGACGGTTGACTTGGGGTGCTTCCGCGATCAGCTGTTTCGTGGT
TTGTTTAGTCTATTGTTGTGGTGGATGAAGCACAACAGCAGGAAGGGAGA
GAAGGGGAGGGGATGTGCAGCTGATGGTGTTTTTTTGTGTGATTACATTC
CGCTGAGCTTGGCACAATCATCATAACCCCGTGAAGGTTGACCCTCAAGA
GCGTACGACCTTACTGTGGATGTTCTCGTCGCGTGGTACAAGTTGTACAT
GTCTGCGTCGAAGGGTAGTCCAAATACACTATGCGACAGAGAGGAAGTGT
TGCAGAATGGTGTATGCGACAACGTTGAAGAAGGAGAGCTGTCGGAGTAA
CCCGGAAGGCAGTCCGAGTAGTGGGGTCTTGCTCCTTTCATGCAAAATCC
ATCTCATATCGAGGCCTGCGGCCGCGCGACTATCCTTGGAGGAAAGAACG
ATAAGCAGGACACCAGAAATTTCTTTATTTGATAA

protein sequence of EsuBft925_9a-0001

>EsuBft925_9 ID=EsuBft925_9|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MEGAGMSSMEGKPPDDINKWNNKGRG

mRNA from alignment at Scaffold_491:481256..483166-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft925_9a-0001 ID=EsuBft925_9a-0001|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1911bp|location=Sequence derived from alignment at Scaffold_491:481256..483166- (Ectocarpus subulatus male Bft15b)
ATGACTCCGCCAATGGCACCACGCAGCCATGGAGGGTGCCGGAATGAGTT
CGATGGAAGGCAAGTGGGAACTAACGGATGCTGGTGCCTTCTTGCGCAGG
GCAAGCATATCCGCAGACTTTATTTGGAGAACGGAGGACATGTTTGTGTC
TCGGCCATACATATTTTGTCATCTCCATGCTACCACTTCTGCGGTCTTGT
GTCGAGCGCTGGGGTATCCCGGGCTCTAGCACTGATTAATGGGTTTCAAA
TACAGTGGGGGTCCCCCTTTAGTGCAAATTGAAATTGCCAATGCCCGGTA
CAGTGCTGGTGTTTCGGCGCCCACACTGAATTGCCTGGTCATTGTCAGCG
CTTTGAACGGTGCCGGTCCGTTATAGTGCCCGTGAATTTTCTGGGCACAT
ACCGGCGGTAAACAGAGACCCCCACTGTGCTGTGTACGTGTTCAGCTTGC
GATGAGTTGAAAGACGGCACATGGCAAGACTAACGGAGGCAGCCAAAATA
ATGTTTGCACCATCTGTATTTTGTGTACAATGAACTGGCGTAAGTTTGAA
CAGATAGTGCCGAAGAATGGAAACGCCTGAACGTGTTCTTGTTAGCCAAA
CCTTCCGACTCGCTCGAGGCTATCGATCGGTGTTGATACAATCTCAGGTT
TCCTCTCATCGCCGTCCCCCTCCAAACCTGGTGCGTTCACCGCGATTATT
CCGCCGCCGTCTCCGGCCTGGTTGACCGGCACCGAGAAGGCCTCCGGACG
ACATCAATAAGTGGAATAACAAAGGCCGGGGTTAGGACGGTTGGGTTCGA
CTCCCCTCCAATCCAACCTAGCAAAGACAATGCCTGGCCGACGCGTCCTT
TTTATACCGCTCCGTTTGGTGCCGGCTGGGCGTCTACCATGCTGTTTCCC
ACCTTGTGCATTGCCGCTAGCCACAGTTATGACGGTCTTGCCGTAGGCGA
GCTGCTTTGCCTTGATGCTGTGCCTCTTGTTGCAAAGAGTGCTGTAGTAC
ATGGTAGATCGCGATTGATCGTCTTTGTGCCGGTTTCGTCTCAGCCAACG
ATTCCCACTCTGCTGCAAAGGCGCCAACCGATGAAATATTGTCGTGCGTT
CCATTTCATTCCGTCATTTGGCAGTATCACGTCGATGTGGGGAAATGTTT
CAGAGACTAAGGCTTACACCCTTTTTCGGGAACGACTGTGTTTTCAACAC
GAAACGAGTCGAGGTATTCCCAAAGACCGGACTTGCGGGTTACAAGTTTG
GAAGGGTTCGAGCCCATGGAAGGGCCTGTCGGTTGAATCGGAATATGTTA
TCGTTGATTTATGGCGACCTCTTCAATCTTGTCGACCTCCCCTCTGTCTC
GTTTAGTTCTTCCTATGTTGACCCGGCTTGCCCTTAGGCTTGGCGACGAA
CTCCACGCGATGGGGGGCCAAGTGGGTGACCGTGACGGTTGACTTGGGGT
GCTTCCGCGATCAGCTGTTTCGTGGTTTGTTTAGTCTATTGTTGTGGTGG
ATGAAGCACAACAGCAGGAAGGGAGAGAAGGGGAGGGGATGTGCAGCTGA
TGGTGTTTTTTTGTGTGATTACATTCCGCTGAGCTTGGCACAATCATCAT
AACCCCGTGAAGGTTGACCCTCAAGAGCGTACGACCTTACTGTGGATGTT
CTCGTCGCGTGGTACAAGTTGTACATGTCTGCGTCGAAGGGTAGTCCAAA
TACACTATGCGACAGAGAGGAAGTGTTGCAGAATGGTGTATGCGACAACG
TTGAAGAAGGAGAGCTGTCGGAGTAACCCGGAAGGCAGTCCGAGTAGTGG
GGTCTTGCTCCTTTCATGCAAAATCCATCTCATATCGAGGCCTGCGGCCG
CGCGACTATCCTTGGAGGAAAGAACGATAAGCAGGACACCAGAAATTTCT
TTATTTGATAA

Coding sequence (CDS) from alignment at Scaffold_491:481256..483166-

>EsuBft925_9a-0001 ID=EsuBft925_9a-0001|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_491:481256..483166- (Ectocarpus subulatus male Bft15b)
ATGGAGGGTGCCGGAATGAGTTCGATGGAAGGCAAGCCTCCGGACGACAT
CAATAAGTGGAATAACAAAGGCCGGGGTTAG