EsuBft1028_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1028_3a-0001
Unique NameEsuBft1028_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_481contigScaffold_481:382409..383914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog82508.K1VA87
ProteomeIdEsuBft1028_3
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl4751|Fungi
Length1431
Hectar predicted targeting categoryother localisation
Evalue1.14e-47
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VGMM@5234|Tremellales
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
EC3.1
GO0003824
GO0097159
GO1901363
GO0004518
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_3aEsuBft1028_3aEctocarpus subulatus male Bft15bgeneScaffold_481 382409..383914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_3a-0001-exonagat-exon-7178Ectocarpus subulatus male Bft15bexonScaffold_481 382409..383358 -
EsuBft1028_3a-0001-exonEsuBft1028_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_481 383434..383914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_3a-0001-cdsEsuBft1028_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_481 382409..383358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_3a-0001EsuBft1028_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_481 382409..383914 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1028_3a-0001 ID=EsuBft1028_3a-0001|Name=EsuBft1028_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1431bp|location=Sequence derived from alignment at Scaffold_481:382409..383914- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCAGCTTCGCCCGGGCAAGAAGGCCGAGGGTATGAAGGACAGGCG
GCTGCCAGGCCGCACGAGATCGGGCATGAGGCACAGCACAGGGCTCATCT
CGATGCTGGACAAGAACACTCTGGTATCGATGCTGGAGGCCCAGAGCGCG
GTGGAGGAGGAGGTCAGGAAGCCGGGGGGAGCGGGGACCGGAGAGCCGGG
GGGAGCGGAGACCGGAGAGCAGGGGGGAGCGCTCGCAGCCGTGGACCTGG
GGGCTGGAGGAGCGGGCTTACCACTTGCATGTGCCACGCTCCTCGCCAAC
CGGGAAGACATCGATGCCATGCTGCGCGACCAGCGCCCGCCGGAGCAACG
CCCTGATCTCCCGCACTGCCAGGCGAGCAACCTTCGCATCCCCAAGAGCT
ACAAGGAGGCTATGGCGTCGGAGTACCGGCACCTCTGGAGCGACGCGATG
AAAAGGGAGTTTTTCGGGTTGCTGGAAGCGGATGAGTTTGGATGGGCCAC
TAAGGTCAAGGCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAGTACA
TTGACTTTGGAGAGTTGTACGCGCCTACCGTTTCTGTTTCGTGTGTCAGG
ATGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGA
TATTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATGC
GATTGCCGCAGGGATGTGGAGCTCTAGCTGGAATGATTGTAAAACTAGGC
AAGAGTCTGCATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCT
GAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTT
GTGTGTTTCGATTGATTGAAGGGGGGTGTGTGGTTTTGATTTTGGTAGTA
CATGTAGATGATATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTT
TGGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGGAGAGTTGA
GATGGTATTCTGGGTGCTTTTACGAGAGAAGCAAGGAGACTGGTAGGCTG
ACGATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAGTATGGAGT
CGCAGGGGGTAAGAGCGTTCCAATGTCTTCGGGGGTCAAGCTTTCTGACT
TTGATGCGGATGAAGAAGCGACAGATTTTCCGTTTCGTGAGCTAGGAGGA
TCTTTGATGTGGCTGGCGACTCAGACTAGGCCAGACATTGCGAATGCAGT
AAGGGCAGTAGCTAGATATTGCGCGTCTCCGAAGCGGGTGCACTGGGATG
CAGCGATGGGTATATTAGGGTATGCGATGAGGACGAGTTACATGGGTGTT
TCATTTCAGAGAGGTACGGTAGAAGGATTCAGCTTGCAGGGGTACGCTGA
TGCGGACTTTGCGAGCAAGGCAGCAGANNNN
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protein sequence of EsuBft1028_3a-0001

>EsuBft1028_3 ID=EsuBft1028_3|Name=EsuBft1028_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=477bp
MRQLRPGKKAEGMKDRRLPGRTRSGMRHSTGLISMLDKNTLVSMLEAQSA
VEEEVRKPGGAGTGEPGGAETGEQGGALAAVDLGAGGAGLPLACATLLAN
REDIDAMLRDQRPPEQRPDLPHCQASNLRIPKSYKEAMASEYRHLWSDAM
KREFFGLLEADEFGWATKVKARLVARGDMQREYIDFGELYAPTVSVSCVR
MLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALAGMIVKLG
KSLHGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVV
HVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRL
TISQQTFTDELAAEYGVAGGKSVPMSSGVKLSDFDADEEATDFPFRELGG
SLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAMRTSYMGV
SFQRGTVEGFSLQGYADADFASKAAXX
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mRNA from alignment at Scaffold_481:382409..383914-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1028_3a-0001 ID=EsuBft1028_3a-0001|Name=EsuBft1028_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1506bp|location=Sequence derived from alignment at Scaffold_481:382409..383914- (Ectocarpus subulatus male Bft15b)
ATGCGGCAGCTTCGCCCGGGCAAGAAGGCCGAGGGTATGAAGGACAGGCG
GCTGCCAGGCCGCACGAGATCGGGCATGAGGCACAGCACAGGGCTCATCT
CGATGCTGGACAAGAACACTCTGGTATCGATGCTGGAGGCCCAGAGCGCG
GTGGAGGAGGAGGTCAGGAAGCCGGGGGGAGCGGGGACCGGAGAGCCGGG
GGGAGCGGAGACCGGAGAGCAGGGGGGAGCGCTCGCAGCCGTGGACCTGG
GGGCTGGAGGAGCGGGCTTACCACTTGCATGTGCCACGCTCCTCGCCAAC
CGGGAAGACATCGATGCCATGCTGCGCGACCAGCGCCCGCCGGAGCAACG
CCCTGATCTCCCGCACTGCCAGGCGAGCAACCTTCGCATCCCCAAGAGCT
ACAAGGAGGCTATGGCGTCGGAGTACCGGCACCTCTGGAGCGACGCGATG
AAAAGGGAGTTTTTCGGGTTGCTGGAAGCGGGTACATTTACTCCGGCGAA
GTAGCAATCAGTGCAGAACGCGATAAACGCTAAGTGGGTATTCAATTGGA
AGGCAGATGAGTTTGGATGGGCCACTAAGGTCAAGGCGAGACTTGTAGCG
AGAGGTGATATGCAGAGAGAGTACATTGACTTTGGAGAGTTGTACGCGCC
TACCGTTTCTGTTTCGTGTGTCAGGATGTTGGCAGCGTTGGCGTGCGAGT
TGAACCTCGACTTGTGTCATTTCGATATTGAGCAAGCTTTTGTGCGTTCG
GAGTTGGAAGAAGACGTATACATGCGATTGCCGCAGGGATGTGGAGCTCT
AGCTGGAATGATTGTAAAACTAGGCAAGAGTCTGCATGGCTTGAGACAGG
CATCTAGGCAGTGGCATGCAATGCTGAAGAGGTGTTTGGTTGCGTTGGGA
TTTGAGCAGTGCATGGCCGATGCTTGTGTGTTTCGATTGATTGAAGGGGG
GTGTGTGGTTTTGATTTTGGTAGTACATGTAGATGATATTTTTGCTGTGG
GAGAGAGGGAGAGATGTGACAAGTTTGGCGCCGACCTTAACAAGTCCGTG
CCGGTGAAGAACCTGGGAGAGTTGAGATGGTATTCTGGGTGCTTTTACGA
GAGAAGCAAGGAGACTGGTAGGCTGACGATTTCTCAGCAGACTTTCACGG
ATGAGCTAGCAGCAGAGTATGGAGTCGCAGGGGGTAAGAGCGTTCCAATG
TCTTCGGGGGTCAAGCTTTCTGACTTTGATGCGGATGAAGAAGCGACAGA
TTTTCCGTTTCGTGAGCTAGGAGGATCTTTGATGTGGCTGGCGACTCAGA
CTAGGCCAGACATTGCGAATGCAGTAAGGGCAGTAGCTAGATATTGCGCG
TCTCCGAAGCGGGTGCACTGGGATGCAGCGATGGGTATATTAGGGTATGC
GATGAGGACGAGTTACATGGGTGTTTCATTTCAGAGAGGTACGGTAGAAG
GATTCAGCTTGCAGGGGTACGCTGATGCGGACTTTGCGAGCAAGGCAGCA
GANNNN
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Coding sequence (CDS) from alignment at Scaffold_481:382409..383914-

>EsuBft1028_3a-0001 ID=EsuBft1028_3a-0001|Name=EsuBft1028_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_481:382409..383914- (Ectocarpus subulatus male Bft15b)
ATGCGGCAGCTTCGCCCGGGCAAGAAGGCCGAGGGTATGAAGGACAGGCG
GCTGCCAGGCCGCACGAGATCGGGCATGAGGCACAGCACAGGGCTCATCT
CGATGCTGGACAAGAACACTCTGGTATCGATGCTGGAGGCCCAGAGCGCG
GTGGAGGAGGAGGTCAGGAAGCCGGGGGGAGCGGGGACCGGAGAGCCGGG
GGGAGCGGAGACCGGAGAGCAGGGGGGAGCGCTCGCAGCCGTGGACCTGG
GGGCTGGAGGAGCGGGCTTACCACTTGCATGTGCCACGCTCCTCGCCAAC
CGGGAAGACATCGATGCCATGCTGCGCGACCAGCGCCCGCCGGAGCAACG
CCCTGATCTCCCGCACTGCCAGGCGAGCAACCTTCGCATCCCCAAGAGCT
ACAAGGAGGCTATGGCGTCGGAGTACCGGCACCTCTGGAGCGACGCGATG
AAAAGGGAGTTTTTCGGGTTGCTGGAAGCGGATGAGTTTGGATGGGCCAC
TAAGGTCAAGGCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAGTACA
TTGACTTTGGAGAGTTGTACGCGCCTACCGTTTCTGTTTCGTGTGTCAGG
ATGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGA
TATTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATGC
GATTGCCGCAGGGATGTGGAGCTCTAGCTGGAATGATTGTAAAACTAGGC
AAGAGTCTGCATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCT
GAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTT
GTGTGTTTCGATTGATTGAAGGGGGGTGTGTGGTTTTGATTTTGGTAGTA
CATGTAGATGATATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTT
TGGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGGAGAGTTGA
GATGGTATTCTGGGTGCTTTTACGAGAGAAGCAAGGAGACTGGTAGGCTG
ACGATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAGTATGGAGT
CGCAGGGGGTAAGAGCGTTCCAATGTCTTCGGGGGTCAAGCTTTCTGACT
TTGATGCGGATGAAGAAGCGACAGATTTTCCGTTTCGTGAGCTAGGAGGA
TCTTTGATGTGGCTGGCGACTCAGACTAGGCCAGACATTGCGAATGCAGT
AAGGGCAGTAGCTAGATATTGCGCGTCTCCGAAGCGGGTGCACTGGGATG
CAGCGATGGGTATATTAGGGTATGCGATGAGGACGAGTTACATGGGTGTT
TCATTTCAGAGAGGTACGGTAGAAGGATTCAGCTTGCAGGGGTACGCTGA
TGCGGACTTTGCGAGCAAGGCAGCAGANNNN
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