EsuBft963_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft963_3a-0001
Unique Name	EsuBft963_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_478	contig	Scaffold_478:67382..68386 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FH62
ProteomeId	EsuBft963_3
Owner	apollo_admin@sb-roscoff.fr
Note	probable wrky transcription factor 19 os:arabidopsis thaliana gn:wrky19 pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	2880.D7FH62\|-
Length	1005
Hectar predicted targeting category	mitochondrion
Evalue	2.31e-11
EggNOG OGs	29ZCP@1\|root,2RXW0@2759\|Eukaryota
Ec32 ortholog description	EsV-1-7 domain protein
Ec32 ortholog	Ec-04_001580.2
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft963_3a	EsuBft963_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_478 67382..68386 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft963_3a-0001-exon	EsuBft963_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_478 67382..68386 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft963_3a-0001-cds	EsuBft963_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_478 67382..68386 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft963_3a-0001	EsuBft963_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_478 67382..68386 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_478:67382..68386+
coding sequence from alignment at Scaffold_478:67382..68386+

spliced messenger RNA

>EsuBft963_3a-0001 ID=EsuBft963_3a-0001|Name=EsuBft963_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_478:67382..68386+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGTTCTGCTCAATCGCGTTTGGGACCGTGCTTTTCAACAGTCATG
GCGTCCGACCGCCAGACATCATGGCCAGGGACGACGATGCTGCCAGGAGC
ACGGCTGTACAACACGGCCATCGTACGGCCAAGCCCATAGCAAGCATGCG
CAGTTCTGCTCCCAGCATAAGCTACGGGGCATGGTCGACGTCGTCAAGAA
GAGGTGCGGCCATCCAGGTTGCACGAAGAGGCCCTCATATGGAAAAGACG
GCAGCAAGAAGGCGGAGTTCTGTGCCCAGCATGCTCTACAGGGCATGGCT
AACGTGTTCAGCAGGAGGTGCCACCACCCAGGTTGCACGAAGGCACCTTC
ACATGGAAAAGACGGCAGCGAGAAGGCGGAGTTCTGTGCCCAGCACGGAA
AGCCAGGGATGACAAATGCCGTGAAGAGGACTTGCGGCCACCCAGGTTGC
ACGAAGCGGCCTTCGTATGGAAAAGACGGCAGTAAGAAGGCGGAGTTCTG
CGCCCAACACGTGCAGCAGGACATGGTCAATGTTAGACATAAGAGGTGCA
GTAATCCAGGTTGCTCGAAGCGGCCGTCGTATGGAAACGACGGCAGCAAG
AATGCGGAGTTTTGTGTCCAGCACGCGCGTCAGGGCATGGTCAATGTTGT
CCGCAAGCGGTGCGGCCATCCAGCGTGCATGAAGTTGTCTTCATATGGCA
AAGCCGACAGCAAGAAGGCGGAGTTCTGTGCCCAGCACGCGCAACAGGGC
ATGGTCGATGTTAATAATAAAAGGTGCAGTCATTCAGGTTGCACGAAACG
TCCGTCGTTTGGAAAAGACGGCAGCAAGATGGCGGAGTTCTGCCGGCAGC
ACGCGCAACGGGGCATGGTCGATGTTGCGAGCAAGAGGTGCGGCCATCCA
GGTTGCACGAAGCAGCCGTCGTATGGAAGAAACGGCAGCAAGATGGCGGA
GTTCTGTATCCAGCACAGCGAGGGGGGAATGATTAATGTGCGACGTGCTA
AGTAA

protein sequence of EsuBft963_3a-0001

>EsuBft963_3 ID=EsuBft963_3|Name=EsuBft963_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=334bp
MWVLLNRVWDRAFQQSWRPTARHHGQGRRCCQEHGCTTRPSYGQAHSKHA
QFCSQHKLRGMVDVVKKRCGHPGCTKRPSYGKDGSKKAEFCAQHALQGMA
NVFSRRCHHPGCTKAPSHGKDGSEKAEFCAQHGKPGMTNAVKRTCGHPGC
TKRPSYGKDGSKKAEFCAQHVQQDMVNVRHKRCSNPGCSKRPSYGNDGSK
NAEFCVQHARQGMVNVVRKRCGHPACMKLSSYGKADSKKAEFCAQHAQQG
MVDVNNKRCSHSGCTKRPSFGKDGSKMAEFCRQHAQRGMVDVASKRCGHP
GCTKQPSYGRNGSKMAEFCIQHSEGGMINVRRAK

mRNA from alignment at Scaffold_478:67382..68386+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft963_3a-0001 ID=EsuBft963_3a-0001|Name=EsuBft963_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_478:67382..68386+ (Ectocarpus subulatus male Bft15b)
ATGTGGGTTCTGCTCAATCGCGTTTGGGACCGTGCTTTTCAACAGTCATG
GCGTCCGACCGCCAGACATCATGGCCAGGGACGACGATGCTGCCAGGAGC
ACGGCTGTACAACACGGCCATCGTACGGCCAAGCCCATAGCAAGCATGCG
CAGTTCTGCTCCCAGCATAAGCTACGGGGCATGGTCGACGTCGTCAAGAA
GAGGTGCGGCCATCCAGGTTGCACGAAGAGGCCCTCATATGGAAAAGACG
GCAGCAAGAAGGCGGAGTTCTGTGCCCAGCATGCTCTACAGGGCATGGCT
AACGTGTTCAGCAGGAGGTGCCACCACCCAGGTTGCACGAAGGCACCTTC
ACATGGAAAAGACGGCAGCGAGAAGGCGGAGTTCTGTGCCCAGCACGGAA
AGCCAGGGATGACAAATGCCGTGAAGAGGACTTGCGGCCACCCAGGTTGC
ACGAAGCGGCCTTCGTATGGAAAAGACGGCAGTAAGAAGGCGGAGTTCTG
CGCCCAACACGTGCAGCAGGACATGGTCAATGTTAGACATAAGAGGTGCA
GTAATCCAGGTTGCTCGAAGCGGCCGTCGTATGGAAACGACGGCAGCAAG
AATGCGGAGTTTTGTGTCCAGCACGCGCGTCAGGGCATGGTCAATGTTGT
CCGCAAGCGGTGCGGCCATCCAGCGTGCATGAAGTTGTCTTCATATGGCA
AAGCCGACAGCAAGAAGGCGGAGTTCTGTGCCCAGCACGCGCAACAGGGC
ATGGTCGATGTTAATAATAAAAGGTGCAGTCATTCAGGTTGCACGAAACG
TCCGTCGTTTGGAAAAGACGGCAGCAAGATGGCGGAGTTCTGCCGGCAGC
ACGCGCAACGGGGCATGGTCGATGTTGCGAGCAAGAGGTGCGGCCATCCA
GGTTGCACGAAGCAGCCGTCGTATGGAAGAAACGGCAGCAAGATGGCGGA
GTTCTGTATCCAGCACAGCGAGGGGGGAATGATTAATGTGCGACGTGCTA
AGTAA

Coding sequence (CDS) from alignment at Scaffold_478:67382..68386+

>EsuBft963_3a-0001 ID=EsuBft963_3a-0001|Name=EsuBft963_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_478:67382..68386+ (Ectocarpus subulatus male Bft15b)
ATGTGGGTTCTGCTCAATCGCGTTTGGGACCGTGCTTTTCAACAGTCATG
GCGTCCGACCGCCAGACATCATGGCCAGGGACGACGATGCTGCCAGGAGC
ACGGCTGTACAACACGGCCATCGTACGGCCAAGCCCATAGCAAGCATGCG
CAGTTCTGCTCCCAGCATAAGCTACGGGGCATGGTCGACGTCGTCAAGAA
GAGGTGCGGCCATCCAGGTTGCACGAAGAGGCCCTCATATGGAAAAGACG
GCAGCAAGAAGGCGGAGTTCTGTGCCCAGCATGCTCTACAGGGCATGGCT
AACGTGTTCAGCAGGAGGTGCCACCACCCAGGTTGCACGAAGGCACCTTC
ACATGGAAAAGACGGCAGCGAGAAGGCGGAGTTCTGTGCCCAGCACGGAA
AGCCAGGGATGACAAATGCCGTGAAGAGGACTTGCGGCCACCCAGGTTGC
ACGAAGCGGCCTTCGTATGGAAAAGACGGCAGTAAGAAGGCGGAGTTCTG
CGCCCAACACGTGCAGCAGGACATGGTCAATGTTAGACATAAGAGGTGCA
GTAATCCAGGTTGCTCGAAGCGGCCGTCGTATGGAAACGACGGCAGCAAG
AATGCGGAGTTTTGTGTCCAGCACGCGCGTCAGGGCATGGTCAATGTTGT
CCGCAAGCGGTGCGGCCATCCAGCGTGCATGAAGTTGTCTTCATATGGCA
AAGCCGACAGCAAGAAGGCGGAGTTCTGTGCCCAGCACGCGCAACAGGGC
ATGGTCGATGTTAATAATAAAAGGTGCAGTCATTCAGGTTGCACGAAACG
TCCGTCGTTTGGAAAAGACGGCAGCAAGATGGCGGAGTTCTGCCGGCAGC
ACGCGCAACGGGGCATGGTCGATGTTGCGAGCAAGAGGTGCGGCCATCCA
GGTTGCACGAAGCAGCCGTCGTATGGAAGAAACGGCAGCAAGATGGCGGA
GTTCTGTATCCAGCACAGCGAGGGGGGAATGATTAATGTGCGACGTGCTA
AGTAA