EsuBft1006_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1006_4a-0001
Unique NameEsuBft1006_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:99142..100272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1006_4
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length107
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_4aEsuBft1006_4aEctocarpus subulatus male Bft15bgeneScaffold_472 99142..100272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_4a-0001-exonagat-exon-51625Ectocarpus subulatus male Bft15bexonScaffold_472 99142..99603 -
EsuBft1006_4a-0001-exonEsuBft1006_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 99665..100272 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_4a-0001-exonagat-three_prime_utr-51Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 99142..99603 -
EsuBft1006_4a-0001-exonagat-three_prime_utr-52Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 99665..100044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_4a-0001-cdsEsuBft1006_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 100045..100272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_4a-0001EsuBft1006_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 100045..100272 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1006_4a-0001 ID=EsuBft1006_4a-0001|Name=EsuBft1006_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1070bp|location=Sequence derived from alignment at Scaffold_472:99142..100272- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGTGACCGGAATGTCGGATGCAACCTGGCCCCGCTGCTGTTCAA
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCTTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACGACTGGAGTAC
ACGTGCAAGAAGGGCAGGTCGGCGGGGAAAAAGGCGACGGTAGTGGAGGA
CGTGGAGGCCCTGTGGGCCATGCTCTAGACTACGCTGACGACGCGGCCAT
CATCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGC
GCGTGGCCGGCCTGTTCGGAATGATGGTATCGGAGCCAAAGACGATCGTG
TGCATGCTCCCAAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGC
CGGCCAGACGCACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCA
TCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAACCGCAGCTGCCGA
GCGTGGGAGTGCTACCGCAGGAACAGTGCTTCGATGTACGACAGGCGACG
GGCCGACCGCCAGCTCANCCGGGAGATCACGAGCCGCAGCTAGCTGCCGA
GCGTGGAAACTCTCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGGAG
CACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACAGGGTGCAT
CGGCTAGAGCAAGCGGAAACGCTCAGACCACCCCCTGTCCTACGCCCAGG
CCCTCATCCAGGCCGGCTGCGAGGAAACCGTCGAGGCCACCGTGCGCAAA
CGAAGACTGTGTTTCGCGGGCTTTGTTATGAGCATGGATGACAACCGCCG
CCCCAAGAGGGTGCTGTCAGGAGCGATGGCGGGGGGCGTGGGATACCGGG
GCGGACAGGAGAGCGACCGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCC
TTCAACATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGTGCCAA
GGACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGACATGGTTCA
TGAGGAAATGGCACGGGCAG
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protein sequence of EsuBft1006_4a-0001

>EsuBft1006_4 ID=EsuBft1006_4|Name=EsuBft1006_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=75bp
MGSDRNVGCNLAPLLFNLFFAAMLMVALAEFDKDPKVTADMVKIGTRLEY
TCKKGRSAGKKATVVEDVEALWAML
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mRNA from alignment at Scaffold_472:99142..100272-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1006_4a-0001 ID=EsuBft1006_4a-0001|Name=EsuBft1006_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_472:99142..100272- (Ectocarpus subulatus male Bft15b)
ATGGGCAGTGACCGGAATGTCGGATGCAACCTGGCCCCGCTGCTGTTCAA
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCTTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACGACTGGAGTAC
ACGTGCAAGAAGGGCAGGTCGGCGGGGAAAAAGGCGACGGTAGTGGAGGA
CGTGGAGGCCCTGTGGGCCATGCTCTAGACTACGCTGACGACGCGGCCAT
CATCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGC
GCGTGGCCGGCCTGTTCGGAATGATGGTATCGGAGCCAAAGACGATCGTG
TGCATGCTCCCAAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGC
CGGCCAGACGCACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCA
TCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAACCGCAGCTGCCGA
GCGTGGGAGTGCTACCGCAGGAACAGTGCTTCGATGTACGACAGGCGACG
GGCCGACCGCCAGCTCANCCGGGAGATCACGAGCCGCAGCTAGCTGCCGA
GCGTGGAAGTGCTACCATCGGAACAGTGCTACGATGTACGACAGGCGACG
GGCCGACCGCCAGCTACAGACTCTCCTATATGGGTGCGCCTCGTGGAGCC
TAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTC
ACAGGGTGCATCGGCTAGAGCAAGCGGAAACGCTCAGACCACCCCCTGTC
CTACGCCCAGGCCCTCATCCAGGCCGGCTGCGAGGAAACCGTCGAGGCCA
CCGTGCGCAAACGAAGACTGTGTTTCGCGGGCTTTGTTATGAGCATGGAT
GACAACCGCCGCCCCAAGAGGGTGCTGTCAGGAGCGATGGCGGGGGGCGT
GGGATACCGGGGCGGACAGGAGAGCGACCGGGTGTCTCGTCTAGGAGAGG
ACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGGAAATGGAAA
GAGAGTGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGC
GACATGGTTCATGAGGAAATGGCACGGGCAG
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Coding sequence (CDS) from alignment at Scaffold_472:99142..100272-

>EsuBft1006_4a-0001 ID=EsuBft1006_4a-0001|Name=EsuBft1006_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=228bp|location=Sequence derived from alignment at Scaffold_472:99142..100272- (Ectocarpus subulatus male Bft15b)
ATGGGCAGTGACCGGAATGTCGGATGCAACCTGGCCCCGCTGCTGTTCAA
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCTTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACGACTGGAGTAC
ACGTGCAAGAAGGGCAGGTCGGCGGGGAAAAAGGCGACGGTAGTGGAGGA
CGTGGAGGCCCTGTGGGCCATGCTCTAG
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