EsuBft942_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft942_18a-0001
Unique NameEsuBft942_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_467contigScaffold_467:191045..191653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft942_18
Protein domainsPS51257
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length60
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft942_18aEsuBft942_18aEctocarpus subulatus male Bft15bgeneScaffold_467 191045..191653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_18a-0001-exonEsuBft942_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_467 191045..191653 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_18a-0001-exonagat-three_prime_utr-23307Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_467 191045..191456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_18a-0001-cdsEsuBft942_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_467 191457..191630 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_18a-0001-exonagat-five_prime_utr-15162Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_467 191631..191653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_18a-0001EsuBft942_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_467 191457..191630 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft942_18a-0001 ID=EsuBft942_18a-0001|Name=EsuBft942_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=609bp|location=Sequence derived from alignment at Scaffold_467:191045..191653- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCTCAGCGCTTGACCTTGTATATGGCAGTATTGAGGAACGGGTACGTC
GCCCCCGGCGGGGGAGGGTGCCCGTGCCACATCTCGTACGGCGATTTCTT
CTCTGGATTGGATGTGGGGGAGGTGCAGTTCAGGGCGTTGCATGCCCAAG
CTATGGCCACGGCCCAAAGGGAGGGGAAGTTCGGTGCTCCGGGGTAAAAT
GTTGGAGCTTGGATACGGGCGGCTAGTGCTGCATCCTTGATCAGACCCAG
TGCTCTCTCAGCTACACAGTTGTATTCTGGGCTGTGTGCTGGGGTGAACT
CCTGTTTGATGCAGTACTTCCGGCACACCTTGCCGAACTCCCCCTCGAAA
AACTCTCCTACATTGTCGGATCTCACGACCATGACATCAGACGGGGCACC
GTCTGCCCGGTTTTCTGCAAGGTACCTCTCGAATGCCTTAGCTGCGTCTG
ATTTGTGCTTCAGAAATAGACACGGTTCCACCTTGTGTAATCATCCTTGA
CAATGAGAGTGTACCACTTCCCCCCCAAGCTCTGCACCCTAGCTTTTCCA
CTCAGATCAACGAAAACTCGCTGCAGTTTCTCAACTGCTCGGGTCGACGT
CTTGTTGGG
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protein sequence of EsuBft942_18a-0001

>EsuBft942_18 ID=EsuBft942_18|Name=EsuBft942_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MAVLRNGYVAPGGGGCPCHISYGDFFSGLDVGEVQFRALHAQAMATAQRE
GKFGAPG
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mRNA from alignment at Scaffold_467:191045..191653-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft942_18a-0001 ID=EsuBft942_18a-0001|Name=EsuBft942_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=609bp|location=Sequence derived from alignment at Scaffold_467:191045..191653- (Ectocarpus subulatus male Bft15b)
TGTCTCAGCGCTTGACCTTGTATATGGCAGTATTGAGGAACGGGTACGTC
GCCCCCGGCGGGGGAGGGTGCCCGTGCCACATCTCGTACGGCGATTTCTT
CTCTGGATTGGATGTGGGGGAGGTGCAGTTCAGGGCGTTGCATGCCCAAG
CTATGGCCACGGCCCAAAGGGAGGGGAAGTTCGGTGCTCCGGGGTAAAAT
GTTGGAGCTTGGATACGGGCGGCTAGTGCTGCATCCTTGATCAGACCCAG
TGCTCTCTCAGCTACACAGTTGTATTCTGGGCTGTGTGCTGGGGTGAACT
CCTGTTTGATGCAGTACTTCCGGCACACCTTGCCGAACTCCCCCTCGAAA
AACTCTCCTACATTGTCGGATCTCACGACCATGACATCAGACGGGGCACC
GTCTGCCCGGTTTTCTGCAAGGTACCTCTCGAATGCCTTAGCTGCGTCTG
ATTTGTGCTTCAGAAATAGACACGGTTCCACCTTGTGTAATCATCCTTGA
CAATGAGAGTGTACCACTTCCCCCCCAAGCTCTGCACCCTAGCTTTTCCA
CTCAGATCAACGAAAACTCGCTGCAGTTTCTCAACTGCTCGGGTCGACGT
CTTGTTGGG
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Coding sequence (CDS) from alignment at Scaffold_467:191045..191653-

>EsuBft942_18a-0001 ID=EsuBft942_18a-0001|Name=EsuBft942_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_467:191045..191653- (Ectocarpus subulatus male Bft15b)
ATGGCAGTATTGAGGAACGGGTACGTCGCCCCCGGCGGGGGAGGGTGCCC
GTGCCACATCTCGTACGGCGATTTCTTCTCTGGATTGGATGTGGGGGAGG
TGCAGTTCAGGGCGTTGCATGCCCAAGCTATGGCCACGGCCCAAAGGGAG
GGGAAGTTCGGTGCTCCGGGGTAA
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