EsuBft1086_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1086_4a-0001
Unique NameEsuBft1086_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:495386..499794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0TI34
ProteomeIdEsuBft1086_4
Protein domainsTMhelix
Protein domainsIPR018750
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length178
Hectar predicted targeting categoryother localisation
Evalue6.58e-14
EggNOG OGs2DZZC@1|root,2S7FI@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF2306, membrane
Ec32 orthologEc-10_004080.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_4aEsuBft1086_4aEctocarpus subulatus male Bft15bgeneScaffold_133 495386..499794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_4a-0001EsuBft1086_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 495494..499004 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_4a-0001-exonagat-exon-99831Ectocarpus subulatus male Bft15bexonScaffold_133 495386..495699 +
EsuBft1086_4a-0001-exonagat-exon-99832Ectocarpus subulatus male Bft15bexonScaffold_133 496205..496302 +
EsuBft1086_4a-0001-exonagat-exon-99833Ectocarpus subulatus male Bft15bexonScaffold_133 496905..497096 +
EsuBft1086_4a-0001-exonagat-exon-99834Ectocarpus subulatus male Bft15bexonScaffold_133 497389..497393 +
EsuBft1086_4a-0001-exonagat-exon-99836Ectocarpus subulatus male Bft15bexonScaffold_133 497537..497640 +
EsuBft1086_4a-0001-exonagat-exon-99835Ectocarpus subulatus male Bft15bexonScaffold_133 498164..498318 +
EsuBft1086_4a-0001-exonEsuBft1086_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 498883..499794 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_4a-0001-exonagat-five_prime_utr-506Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_133 495386..495493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_4a-0001-cdsEsuBft1086_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 495494..495699 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1086_4a-0001-exonagat-three_prime_utr-796Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 499005..499794 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1086_4a-0001 ID=EsuBft1086_4a-0001|Name=EsuBft1086_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1780bp|location=Sequence derived from alignment at Scaffold_133:495386..499794+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGCTGGAGCCACGGCAATCGCAACGCAAGGCATAATTTTACTCTCTAGC
AGAAGAAGCCGTTGACGTTATTTTCACACGCCTGCCGAAAACCCCTGCAC
GTGGTGGAATGGCTCCCCAGCTGCCTGCGTCAGGCCCTTTTCCTTCTTCA
GGCGGCAGTCAACCTGCTGGAAGACTCCTGATGCTCGGAGTTCTTGAGCA
TCGGCGGTTTAGCACGGCGATGTGGTCGATGCTGATGCTTCTGTCGTTCA
TCATGGTGGTCCACAACCTGGTGCTTCAGACGTGGGGCATCGGTACCTTC
CCTTCTATAACGAGGCGGATAGAAGCGCAGGGCGAACAAGGCTTCTACAG
ATCCACCCCGCTGTTCGACGCCGAGGGTAAACCGTCCTTCTTGGCCTACG
CCCGAACGCCGGCGGGAAGGTTCATGCACATCCTCCCCGCTGGACTCTGG
AGCGTGATCGCTCCGTTGCAGCTCAACCCGTCCTTCCGAGCGAAGCACCG
CGCGGCCCACCGCAGGCTTGGCCGCCTGTTCATCTTCATGAGCGTCAGCA
TTTCCCTCGGGCTCGTCCCTCTTGTCCTCGGCGTGGCCCCCACGACTACG
GCGACGGGAGATTCACGGGGCGGAAGGGGGGCGCTCCTCTTCGCGGGGTA
CTTCCTGGTAACGGGCTTACTAGCAGTTCATCACGCAAGAAACAAGCGTT
TTGCCGATCACAGGGTCTGGATGCTACGACACGTGGCAATGGGATACTCG
GTGCACATGCAGCGCCTTCTCGGCCACCTGACCTGGTGGATCTTCCCCTT
GTTGATGCCCGGGTACACTGACCTCACGAATGACGGGATGGAATTACGTG
CTCGCGTGTTCGCGTTGTATTTTGTTGCGGGCGTTGTCCTGACGGTGGGG
CCAATGGAGGTGTGGCTGCGGCACACGTTGCCTTCCGGAAAAGTATTGCG
AGCGGGGCAAGAGCCAGGGCTCTCCATCAAGGACTCGTGACGCATCACAC
CTTAATTAACTGTACACGTATTCGCGGCAACCATGGCCGTTAAACCGTCC
CGAGCCACACTCAATGGCCGAACGAATCCTCGCCAAGCGACGTGAACCCC
ACAATACCGCGGTTCAGCTTGGCATGTCAATATTCCGCCGCAATCTTAGA
GACATCGATTTCACGAATCTGGCTTCCAGCAATTTCTGGGTGCAGCTGTC
CTGCGACGGTAGAGTTTCGGCGGCCAGAACCATACATCGTTAAGTACCCG
ACTTGCAGAGATGTGAAGGTTTCACCGGCTGGCAGGAACCGATCGATCTG
TGAGGCACGATGAAACGGACACATATATTTACCCACTAGCGGGCGACATG
AAAACGCTCGACGGACGAGCAGGGCATGCCCAAACTGCCGCAAGTATTAG
GAAAGGGTTGACCTAGCTCCTAGATTAAAACCAAAGCCCTCATGGCTTGT
CTTCCTGGCGTAGACCAACCGTAGTAGGCAAATCCAAACATGCATGCATG
CGTGAATCGATGCAAGGTTAGATATTCAAGCTGTGTTCTGTTGCATGCTT
CCAGAATCGTAATGAGCACCCTAGGAGGCTCGAGAGCATGGTGTTGCAGA
AATCTTTGCCATCGATGCTTGTCAGCTTACCAGTACCGTCTTATGAACAC
TTGGGATTGGCTGTTGCTGGGTTTATGTGGTTCCGTGATGTCCATGAAGT
AAGTGTCCCATGCCATCCTCTCTCTCTCTCTGCATTCTCGGTCTACTGAT
GATCTGAGGTGGTCATGCTCTGCTTTCTTC
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protein sequence of EsuBft1086_4a-0001

>EsuBft1086_4 ID=EsuBft1086_4|Name=EsuBft1086_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=293bp
MAPQLPASGPFPSSGGSQPAGRLLMLGVLEHRRFSTAMWSMLMLLSFIMV
VHNLVLQTWGIGTFPSITRRIEAQGEQGFYRSTPLFDAEGKPSFLAYART
PAGRFMHILPAGLWSVIAPLQLNPSFRAKHRAAHRRLGRLFIFMSVSISL
GLVPLVLGVAPTTTATGDSRGGRGALLFAGYFLVTGLLAVHHARNKRFAD
HRVWMLRHVAMGYSVHMQRLLGHLTWWIFPLLMPGYTDLTNDGMELRARV
FALYFVAGVVLTVGPMEVWLRHTLPSGKVLRAGQEPGLSIKDS
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mRNA from alignment at Scaffold_133:495386..499794+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1086_4a-0001 ID=EsuBft1086_4a-0001|Name=EsuBft1086_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4409bp|location=Sequence derived from alignment at Scaffold_133:495386..499794+ (Ectocarpus subulatus male Bft15b)
GAGCTGGAGCCACGGCAATCGCAACGCAAGGCATAATTTTACTCTCTAGC
AGAAGAAGCCGTTGACGTTATTTTCACACGCCTGCCGAAAACCCCTGCAC
GTGGTGGAATGGCTCCCCAGCTGCCTGCGTCAGGCCCTTTTCCTTCTTCA
GGCGGCAGTCAACCTGCTGGAAGACTCCTGATGCTCGGAGTTCTTGAGCA
TCGGCGGTTTAGCACGGCGATGTGGTCGATGCTGATGCTTCTGTCGTTCA
TCATGGTGGTCCACAACCTGGTGCTTCAGACGTGGGGCATCGGTACCTTC
CCTTCTATAACGAGGTGAAGTAACTTCAAGGCGCTTCGTACACCTTCGCT
ACTGCTCTACACCACTACTGCTACTGCTTCTTGTGCAGCGGTTTCTTCAG
CCCATGTCTGTTGCTTCATCAGCGCACATCATGTGTAAGATTCCTCAATC
TCTCTCCGTCCTCGAGGTACAACTTGGATGCTCTGTGGTACTCAACAAGG
TTCTGCTAGTGTCTTGGCTTTTGGCTTGACGCCCGGTCCGTCAACAGGTG
ACTCTCTTTGTGTCAAACACGATTGGACTATAACATAAGAAGGCGAGCCT
TCTTCCTGCCTGCAGAGCGTGGAAGACTCGAACACCGAGACACACACAAA
AAATAGATTCATTCGCATTCCAGCTGCAGATACACAGGGGGGATATACTT
CCCATTGGACCACAAACCGCCATCGAGCGGTGATGGCACCTGCGCACTTC
TTGTCTCCTTTCCGTTGAAAGACTCGGCTGTTTTTTTGTTCATGGGTTTG
GACAACGATGAGCGTGCAGGCGGATAGAAGCGCAGGGCGAACAAGGCTTC
TACAGATCCACCCCGCTGTTCGACGCCGAGGGTAAACCGTCCTTCTTGGC
CTACGCCCGAACGCCGGGTGAGAGAGATTTAGCATCGTGTCGAACGCGTC
TTCTTCTTTTCGTCGGCTACACTCTCGTCGCGTGTGATGTGTCAACGGTT
TGACACTTGCAAGGCGGGTTTTGGTTGATGAAGGTATCCATGCCCTTCTT
CTTCGATGTTTGCGTGCCCGTTGCTCCCTTGCGTCGATGAATCTTCTATT
CGTCGTCGTTCGTCTTCGTATTTAGTGCTGCTGCAGACACGGCAGGACTC
AATGCCTGCATGCCGTCGTAAGTTGTTGGACGTGGGTAAGGCCTCATTTT
CCTTCCTGTGTTGTATTCCCGGAGCCCTTCGCTGTTGGTTTCCCCTCTAC
ACTCTACACTCGAAGACGCGTGTTTGAAATATAGCAGTTGTGTGTTTGAG
GTCCCTGTCTGACGTGCGTACTTCGCTGAATCCTTCTCAACTGCTAGTCC
ATTGTGTGTGGTCGTTGAATCGTGATAAGTCTCCCTGGGGGGGCGGGCCT
GTCCGTGGAAATGACGTTGCCGCCCCCCCCCCACTGTAATTTTTTTCTAA
CCATCGTCCAAATGACCACGAGAGTCTCTCCCCCTAATTCTCTCCTTGGC
CGTGCTGCTGCTGCATCAGCGGGAAGGTTCATGCACATCCTCCCCGCTGG
ACTCTGGAGCGTGATCGCTCCGTTGCAGCTCAACCCGTCCTTCCGAGCGA
AGCACCGCGCGGCCCACCGCAGGCTTGGCCGCCTGTTCATCTTCATGAGC
GTCAGCATTTCCCTCGGGCTCGTCCCTCTTGTCCTCGGCGTGGCCCCCAC
GACTACGGCGAGTAGAACGACGCTCGGACCAAGTGCATTGATTGTGGTAG
CGATCTCAGCTGAAACGGAACACTTGTTCGTTTCATGTACGGATCAAGAG
TCTCACCCCTAGGTTTGGGGTGGAAAGAAAAGGCGTTTCGCTTGCCGGTT
GAATCGGGGCTTGCGGCAGCAGTGCATGAAGTTTCGTGGGTGGACACAGC
AAAACGCGCACCTGAGTAGTAAGTGGGAGGAGACTATGTCGACCGAATGT
TGTTGTATGTTCAGCGGGAGGAGATTATTTCATGTGAATATTGTCATGGT
TAGCGGGAGTTTGTAGTAGCTTTTTGGCGGCACCCTTGAACCCGGGGGAT
CGCATGTTTTTCGTATCTGTTTGGTCCATTAGGAGTGCCCACAGCCGTCA
TCTGATGGATTGACGAAGATTGTAAAATTGCAAATATCCTCCAACCCACA
GGATTCACGGGGCGGAAGGGGGGCGCTCCTCTTCGCGGGGTACTTCCTGG
TAACGGGCTTACTAGCAGTTCATCACGCAAGAAACAAGCGTTTTGCCGAT
CACAGGTAAGAATCGGTAATGGGTGGGGGTAAAATGTGGGATTTCGCTGT
CGGCCGCGTGGGAACTCGAAGGACATGTCAACACCAATGAAGTATCTGTT
TTTTTGTCAAAGCAATGACCATTGAGAAGTATAATAGGGGGTTCGCGTGA
AGCCAGCGCTTTGTCGATCGCGCGTGCGTTGTGTCAGAACAAAGCGTTCC
TCTTACAAAGAAATCGCCTGGCTTAGCACAAAATCATTTGCCCAACGGTT
CATTGGCACTATAGCACTACCCTCATCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTTGCTAGACTATGAATTGGAGGAACGTGCACAACCACATCAGAGT
AACACAAATGCAACAATACACACAACATGCATTGTTTCACCTTCCCCGTT
TCCGTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAACCAACTTTAGGGTCTGGATGCTACGACACGTG
GCAATGGGATACTCGGTGCACATGCAGCGCCTTCTCGGCCACCTGACCTG
GTGGATCTTCCCCTTGTTGATGCCCGGGTACACTGACCTCACGAATGACG
GGATGGAATTACGTGCTCGCGTGTTCGCGTTGTGTGAGTGCTTGGAGTGC
GACCGGTGTGTACCATATGAAGGTGGTTGATTGTGGGGAGGGGGACTGGG
TTCTGTGTGGCGTGTTACTCGTGGGCGGATATTCCTCGACGTAGCACGCG
TGTAGGTGTGTTGCGTTTTCGGGAACTGTGTCCGATGTGTTGGATGTCGA
ATCAAATCATTTTCAACGCATGTGGACTCTGAGGGCTTTGACCGCAGTCA
CGAAGTGACGATTATTAATTTCCTCTTTGCAGCACCATATCGACTTGCGA
GGGAAATTGATACTTCGAATGAAAGCAGAGATGCCAGGGTAGGAGCTAAA
TATGTATGGGCTTTCTAGGGCACTCTCCGACGGAATACCGCCGCTGCGAG
CATCCTACTGAACGATCAATGATGTCTCATCGCAAGCGCTTCCCTCCTCG
TATGGGCCATGCCGGGATATGCAATACCCGTACTAGAGAGATAAGCGCCC
CTTTCAAATATTCCTAGCTGACGCGCCCCCGCCGGATGGCCTGCCCCCTC
CCTCCCTCCCCCGCCCCTATCGGCCCCTCTGCGTATGCACGAAGCAGATT
TTGTTGCGGGCGTTGTCCTGACGGTGGGGCCAATGGAGGTGTGGCTGCGG
CACACGTTGCCTTCCGGAAAAGTATTGCGAGCGGGGCAAGAGCCAGGGCT
CTCCATCAAGGACTCGTGACGCATCACACCTTAATTAACTGTACACGTAT
TCGCGGCAACCATGGCCGTTAAACCGTCCCGAGCCACACTCAATGGCCGA
ACGAATCCTCGCCAAGCGACGTGAACCCCACAATACCGCGGTTCAGCTTG
GCATGTCAATATTCCGCCGCAATCTTAGAGACATCGATTTCACGAATCTG
GCTTCCAGCAATTTCTGGGTGCAGCTGTCCTGCGACGGTAGAGTTTCGGC
GGCCAGAACCATACATCGTTAAGTACCCGACTTGCAGAGATGTGAAGGTT
TCACCGGCTGGCAGGAACCGATCGATCTGTGAGGCACGATGAAACGGACA
CATATATTTACCCACTAGCGGGCGACATGAAAACGCTCGACGGACGAGCA
GGGCATGCCCAAACTGCCGCAAGTATTAGGAAAGGGTTGACCTAGCTCCT
AGATTAAAACCAAAGCCCTCATGGCTTGTCTTCCTGGCGTAGACCAACCG
TAGTAGGCAAATCCAAACATGCATGCATGCGTGAATCGATGCAAGGTTAG
ATATTCAAGCTGTGTTCTGTTGCATGCTTCCAGAATCGTAATGAGCACCC
TAGGAGGCTCGAGAGCATGGTGTTGCAGAAATCTTTGCCATCGATGCTTG
TCAGCTTACCAGTACCGTCTTATGAACACTTGGGATTGGCTGTTGCTGGG
TTTATGTGGTTCCGTGATGTCCATGAAGTAAGTGTCCCATGCCATCCTCT
CTCTCTCTCTGCATTCTCGGTCTACTGATGATCTGAGGTGGTCATGCTCT
GCTTTCTTC
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Coding sequence (CDS) from alignment at Scaffold_133:495386..499794+

>EsuBft1086_4a-0001 ID=EsuBft1086_4a-0001|Name=EsuBft1086_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=882bp|location=Sequence derived from alignment at Scaffold_133:495386..499794+ (Ectocarpus subulatus male Bft15b)
ATGGCTCCCCAGCTGCCTGCGTCAGGCCCTTTTCCTTCTTCAGGCGGCAG
TCAACCTGCTGGAAGACTCCTGATGCTCGGAGTTCTTGAGCATCGGCGGT
TTAGCACGGCGATGTGGTCGATGCTGATGCTTCTGTCGTTCATCATGGTG
GTCCACAACCTGGTGCTTCAGACGTGGGGCATCGGTACCTTCCCTTCTAT
AACGAGGCGGATAGAAGCGCAGGGCGAACAAGGCTTCTACAGATCCACCC
CGCTGTTCGACGCCGAGGGTAAACCGTCCTTCTTGGCCTACGCCCGAACG
CCGGCGGGAAGGTTCATGCACATCCTCCCCGCTGGACTCTGGAGCGTGAT
CGCTCCGTTGCAGCTCAACCCGTCCTTCCGAGCGAAGCACCGCGCGGCCC
ACCGCAGGCTTGGCCGCCTGTTCATCTTCATGAGCGTCAGCATTTCCCTC
GGGCTCGTCCCTCTTGTCCTCGGCGTGGCCCCCACGACTACGGCGACGGG
AGATTCACGGGGCGGAAGGGGGGCGCTCCTCTTCGCGGGGTACTTCCTGG
TAACGGGCTTACTAGCAGTTCATCACGCAAGAAACAAGCGTTTTGCCGAT
CACAGGGTCTGGATGCTACGACACGTGGCAATGGGATACTCGGTGCACAT
GCAGCGCCTTCTCGGCCACCTGACCTGGTGGATCTTCCCCTTGTTGATGC
CCGGGTACACTGACCTCACGAATGACGGGATGGAATTACGTGCTCGCGTG
TTCGCGTTGTATTTTGTTGCGGGCGTTGTCCTGACGGTGGGGCCAATGGA
GGTGTGGCTGCGGCACACGTTGCCTTCCGGAAAAGTATTGCGAGCGGGGC
AAGAGCCAGGGCTCTCCATCAAGGACTCGTGA
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