EsuBft190_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_14a-0001
Unique NameEsuBft190_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:371418..376069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZ50
ProteomeIdEsuBft190_14
Protein domainsPTHR12176
Protein domainsIPR013216
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR029063
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Notemethyltransferase-like protein mitochondrial os:danio rerio gn:mettl12 pe:2 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1981
Hectar predicted targeting categorymitochondrion
Evalue6.33e-99
EggNOG OGsKOG2352@1|root,KOG2352@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionmethyltransferase activity
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0043231
GO0005794
GO0008649
GO0003333
GO0005975
GO0008233
GO0016020
GO0008276
GO0008175
GO0044699
GO0008170
EC2.1.1
GO0008171
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_14aEsuBft190_14aEctocarpus subulatus male Bft15bgeneScaffold_463 371418..376069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_14a-0001EsuBft190_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 372193..375037 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_14a-0001-exonagat-exon-18575Ectocarpus subulatus male Bft15bexonScaffold_463 371418..372670 -
EsuBft190_14a-0001-exonagat-exon-18576Ectocarpus subulatus male Bft15bexonScaffold_463 373320..373438 -
EsuBft190_14a-0001-exonagat-exon-18577Ectocarpus subulatus male Bft15bexonScaffold_463 374834..375077 -
EsuBft190_14a-0001-exonEsuBft190_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 375705..376069 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_14a-0001-exonagat-three_prime_utr-7011Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 371418..372192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_14a-0001-cdsEsuBft190_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 372193..372670 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_14a-0001-exonagat-five_prime_utr-4597Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 375038..375077 -
EsuBft190_14a-0001-exonagat-five_prime_utr-4598Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 375705..376069 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_14a-0001 ID=EsuBft190_14a-0001|Name=EsuBft190_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1981bp|location=Sequence derived from alignment at Scaffold_463:371418..376069- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAAACGGTGGTTTACTCGCTAATTTACCGCCAATAGGTGGTGATGACCC
TCCCATCGTGAAGAAAAATCGGGAAACAAAGGAAGGTGCAAACAAAGGTT
GGCGCTGAGGAGGATTGAACCCGCAACCTCTGGCACTGAATAACCACATA
TGGATTCCTTCTCTCAAACTTTTAGACAACGAAAGGACGCGTCATTCGAA
TACGCCTCTTCGTATCTTTTTCGCGCTTCGCGCGAAATAAATATAAATCG
TTCCCGGGTTGCCCTACCCATGGTCGCTGAGCCCAATTATACAATCAACC
AAACCGCACATAGGCAGGCCGGCGACTTGCATGCGTGGGCTAGAAACGCC
AACAAGAAACATCAGCACAGTGCCCGAGCCGGCCAATCACACCAGGTCCT
AGTCTATGGCTCTTCGAAATTCCATCGCCTCGAGAATGCGAGGGGCGGCT
ACGGCGTTGTGTAGGTCGGCAACAGCAGCCGAACGCCAGGTGGCGCCGAT
TCGACTACTGCGGTCAACGACTGCACGGGGTGAGGGGGCGCAGCCGGCCG
ACACATCTGCAGAAGATATGACCAAGAAATTTGGAGATCCTTCGTTTTGG
GAAAGGAAGTACACCGGCCCCCAAGGTCACAAGGCATTCGAATGGTTCCT
GTCATACGATAGAGGGTTGAAAGAATACCTTCTTCCTGTATTGGAGTCAT
TGGTGATGATGCCCTCCTCCCACTCTCGAGAAAGCCACAGACTTCTCCAC
GTTGGTTGTGGAACCAGCGAGGTGGGCCCCAAGCTAGCGGAGGAACCAGC
CTTGTCGTCGCTTCACGTGACGGATATCGACTCCAGCCCCACCGCCGTGA
GGCTAATGCAGAAGCGCCACGCGGCTCTCGGCAACTACGACTGTCGCGAG
GGGGATGTTCTCAACCTTGATTTTCCGGCCGACCGCTTCGATGCGGTCGT
GGACAAGGGGACGCTGGACGCCCTCCTGTGTCGAAGCGCTGAGGACGCCC
TAGCTATGGTGTCTGAGGTGCATCGGGTTCTCCGCAAGGGAGGCGTGTAC
GTCCAGATTTCAGCGGAGGACCCCGAGATGCGCTTGGAACTGCTCACGGA
ATGCGGCAGCAGCTCATGCCGTGGGCCGTGGTCTCGCTCTATCTTCAAGG
AGCTCGGAGAGAGTGAGGGATCGGCGGCGTACTATATGTACGTCCTCGTC
AAATAGTGTAGTTAATTCGGATGTGTGTTGTGGTCCGATGTATAGGGGAA
GGGCTCAGGACATCCGACGAAGCACGTTCCGTGTATGTATGTACTGCTGG
CTGTGATTCTCCGTTTGTTTCCTTACGGGTGAGGCGTGTGCGGCCCCTTG
AGCGTTGTTTGCCCTTGACGGCCCAATTTAGCATATTGTCCTGATTGGTG
TGTCGGATAATGATGATATTGTTTTGGTGCAGCCAGTATGCGGGGCTGCT
ACATTACTCACATATGTATGTCAAAAAAATCTTCTTCGGTATTCGTGCGC
TTGCTTCCTGTTGGTTTATCCTCGGCTTGGAGTGTCAATTGATCGTTGAT
TTCAACACCCCCTTCAGACATTTCCCGTAGAACGTGTAGACTGTTGTTGT
TGCTCGAGGTGTGGACGCCTGAGGTTTGATGTTTGTGCGACGTCTCTTCG
GAGCATCTCTCTTTCCGGGGTGGTTCCACTTCTTCTGTCATGGGTACTGT
GAGGGGTTGGGTGGGTGGGTGGGCAGACTTACTGCTTCCTTTTTCCTCCG
TATTTTCTCGCTTCTCGAAGGCAATGGAGACGATGATAGCAATGACAGAA
GTTGCCCGCAGTTTCCGATCGGCCCAATCTGTTCAAGGGTATTTCCGGGT
GACAGAAAATCCCTGATATTCGCTGCTGTTGTTGCCATAGTCACCGGCGG
TGGGTAATACTTCAAAGCATTACGTGTTACAGTGGTACCATTGTACCATT
CGCATTACCATGCGACGCTTGGAACAGGGGC
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protein sequence of EsuBft190_14a-0001

>EsuBft190_14 ID=EsuBft190_14|Name=EsuBft190_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MALRNSIASRMRGAATALCRSATAAERQVAPIRLLRSTTARGEGAQPADT
SAEDMTKKFGDPSFWERKYTGPQGHKAFEWFLSYDRGLKEYLLPVLESLV
MMPSSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRL
MQKRHAALGNYDCREGDVLNLDFPADRFDAVVDKGTLDALLCRSAEDALA
MVSEVHRVLRKGGVYVQISAEDPEMRLELLTECGSSSCRGPWSRSIFKEL
GESEGSAAYYMYVLVK
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mRNA from alignment at Scaffold_463:371418..376069-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_14a-0001 ID=EsuBft190_14a-0001|Name=EsuBft190_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4652bp|location=Sequence derived from alignment at Scaffold_463:371418..376069- (Ectocarpus subulatus male Bft15b)
GTAAACGGTGGTTTACTCGCTAATTTACCGCCAATAGGTGGTGATGACCC
TCCCATCGTGAAGAAAAATCGGGAAACAAAGGAAGGTGCAAACAAAGGTT
GGCGCTGAGGAGGATTGAACCCGCAACCTCTGGCACTGAATAACCACATA
TGGATTCCTTCTCTCAAACTTTTAGACAACGAAAGGACGCGTCATTCGAA
TACGCCTCTTCGTATCTTTTTCGCGCTTCGCGCGAAATAAATATAAATCG
TTCCCGGGTTGCCCTACCCATGGTCGCTGAGCCCAATTATACAATCAACC
AAACCGCACATAGGCAGGCCGGCGACTTGCATGCGTGGGCTAGAAACGCC
AACAAGAAACATCAGGTGAGCAATGATGTACGCGTCGTTTTATCCGTGCC
TCAGATTGTTGGTAGCAAAGCTATGGAGCAGTGCGTCCACGGAATCTACT
CTTGCTCTCACAGACGCAGCGCACGATTCCACATCATTATATCTGCAGTA
CGCCCACACCAGTCAACCCCTTCGAGTTGTGCGAATTCCAGCGTAGTCTA
ACTGGTGTGCTTGCGGTATAATGTAGCTAAGTTGGATTGTTTTGCTCGCG
GTTGCCGAATCAGCCGGACTACTACAGTAGTTGTGTTCAAAATACAGTAG
AACTCCGCCGCATATCGGATAGGAGTAAGAGCCATGGAAGCGGTAAATGC
GGGGGAACTCGAGCAGAAGAAAACTGCTGTTGTTTTAAATTAGCCGATAC
GAGACGTTCCTTCTCTCTTACTATTGAATCAAAGCGTGTGGCAGCCGCTT
TCAAATACAACCATCTGGCAAAATTATCCTCTGCTACTGCTGTAGGCAAA
ATGAGTAGCCAGCAGCTACATTAGCACCGAACCACAGAGGAGATGCGCTC
AATATTTCAATGTTGAAGCACACGTGCCCCCCCTCCCTCTATCTCCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTACGAACTAACGAAAGCACAGTGC
CCGAGCCGGCCAATCACACCAGGTCCTAGTCTATGGCTCTTCGAAATTCC
ATCGCCTCGAGAATGCGAGGGGCGGCTACGGCGTTGTGTAGGTCGGCAAC
AGCAGCCGAACGCCAGGTGGCGCCGATTCGACTACTGCGGTCAACGACTG
CACGGGGTGAGGGGGCGCAGCCGGCCGACACATCTGCAGAAGATATGACC
AAGAAATTTGGAGATCCTTCGTTTTGGGAAAGGAAGGTTGTTGTTGTTGT
TGTTGTTTCTCACATTAGCTCTATAGTCCACAAAAAGTGGGGAGCCCGTG
GTCTCAAAAACCCGGCACATACCGCCGCGGGGAAACAAAACAAAAATTGG
GTACAAACCACTCGGAAAAAGAAAACAAAATGATACAAAGGAAATAACCG
GTACCGCGCTGACCGTTCGAGAAAAGAGCCCTCGGAAGCCGATCGAAAAA
AAACAAAAACAAAAATACAGGAGGACGCTTCCCACACCCGCCTAGAGAAA
AATCAAAGGGTAACGTACCAGCACCAGGCACTACCCACCAGGGCATGGGA
GTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGCAGACAGCCAGAT
GTGCAAAAAAACAAAAGCAGCAGCAAAAGCGAGATCAAGGATCCCAACGC
AGCAGAGTAGGCAGGGAGAACATGAAAAAAAAGAAACACAGCACAGAGGC
CGAAGGCAATACAAAGGACATACACAAAGGAGTATATCATACAGCAGGGA
GGGAAACAGGGCGCAACAACATCAACCGGGTACATAGTTCGCCACAAGTG
CTGCCTCGGCCGCCCTACTCGCTTCGGTGGTGTGTTGTGTCAAACGTCAA
ATGTTTGAAGTGAAAGGTACTACTGCTTCGCGTTGATTGTTATGCTGCTG
CTGCAATGTAGAGCCCAACGATTCCGCTCTCTTCAACGTTCTGCGCTTCG
AGAATTGAGATTTTGGTGAGAGATCGGATAATGTTCCACGTTGTCGAGAA
ACGAAGCAGTTTTGCGACTGTCGGTTGTTGTAGATCTGAGGTGATCACTT
GCCATCAATCTCATCGTGTTGCGTCTATCTATTATGCTCTTACGAGTGTT
GACTTGGCGGCAGCTGGACCACGGCGTATGTATGACTCGATCAACTACTA
CCGCAGTACCGCCGGTCGCTCGCAAACAAGGTGGTTTTGGCGAGAGGTCT
CCTGTTGTTGGTGGTGTGCTAGACTTGTCTGCTCACTGAAAATCTTCACA
CCTTTTTGTTTCCACTTCCAAACATCCCAAACATCATCCGTGCTCGTTGG
TGGTCGCTGCTCTTGGCGCCGCATGTCGTCACAGCGCTACTATACAGTAG
CCTTGCTTACGAAACCGTGATGTGTACGGCATAAGGCTCTGCTGCGTGCA
CCGCCTTCTTTCCGTACCCTAATGGGGCTTGACATTAGTGTGATTTCCCA
TTTTCATCTACACATTGTCACACGCGTATACTACCCGAATATCTGCTTGT
CTTGACTTGTGGATTGGGGTGAACGTCGACCACCTCACTGTGGACGCCCG
TCCTCTCTGCGTTTTGTTGCTGTCTTTCGCCCCACATGGTTTCATCGGAT
GGCATGACACGGCACGGCTTACCCTTGGCAGTACACCGGCCCCCAAGGTC
ACAAGGCATTCGAATGGTTCCTGTCATACGATAGAGGGTTGAAAGAATAC
CTTCTTCCTGTATTGGAGTCATTGGTGATGATGCCCTCCTCCCACTCTCG
GTGAGATCGATCACCATGAGCCATGACCGGCCATGAAATCGCCCAAAACG
AAAAATCTACCAGTCGCAATGCTGGGGTAAGGAGGTGACCCGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGCATCCTTACGACGGATCGGTAATGATCCTG
CCCACGGACTGATACTACATGGAATTAGAGAGGCGGCTGAAAAACTCACC
TACAGTATCTACCTCCCGTCCCGTTCTCGTAGCGTTGGCATAGCGAAGGG
ACGGATGTGTCTGGGGCTTGTGTCCAGTAGCGTGCATCGCTTGAAGCGTA
CGGATCGTGAGGGTAAATGCGACAAGCATGCATAGGATTGATTCCTCAGC
TGCATATGGCACCAGTCAGACTGAACTCAAAGCCAGTGTGTCATGATCTT
TCATTCCCGTCACGAATTATGGCCAAACGACTTGTATGGACCCTGAATGT
AATACCAGGCAGCGTTCATTCCCCTCAGCCCCCCCCCCCCCCCNCCCCCC
CCCCCCCCCCCCCTCCCCCAATGGCGTCCGCTATGACGCATCACAGCGAT
CAATTTATACGCCGTCTTTCTCCGGTCCCCCCCAACCCCGCTCTCCAAGA
GAAAGCCACAGACTTCTCCACGTTGGTTGTGGAACCAGCGAGGTGGGCCC
CAAGCTAGCGGAGGAACCAGCCTTGTCGTCGCTTCACGTGACGGATATCG
ACTCCAGCCCCACCGCCGTGAGGCTAATGCAGAAGCGCCACGCGGCTCTC
GGCAACTACGACTGTCGCGAGGGGGATGTTCTCAACCTTGATTTTCCGGC
CGACCGCTTCGATGCGGTCGTGGACAAGGGGACGCTGGACGCCCTCCTGT
GTCGAAGCGCTGAGGACGCCCTAGCTATGGTGTCTGAGGTGCATCGGGTT
CTCCGCAAGGGAGGCGTGTACGTCCAGATTTCAGCGGAGGACCCCGAGAT
GCGCTTGGAACTGCTCACGGAATGCGGCAGCAGCTCATGCCGTGGGCCGT
GGTCTCGCTCTATCTTCAAGGAGCTCGGAGAGAGTGAGGGATCGGCGGCG
TACTATATGTACGTCCTCGTCAAATAGTGTAGTTAATTCGGATGTGTGTT
GTGGTCCGATGTATAGGGGAAGGGCTCAGGACATCCGACGAAGCACGTTC
CGTGTATGTATGTACTGCTGGCTGTGATTCTCCGTTTGTTTCCTTACGGG
TGAGGCGTGTGCGGCCCCTTGAGCGTTGTTTGCCCTTGACGGCCCAATTT
AGCATATTGTCCTGATTGGTGTGTCGGATAATGATGATATTGTTTTGGTG
CAGCCAGTATGCGGGGCTGCTACATTACTCACATATGTATGTCAAAAAAA
TCTTCTTCGGTATTCGTGCGCTTGCTTCCTGTTGGTTTATCCTCGGCTTG
GAGTGTCAATTGATCGTTGATTTCAACACCCCCTTCAGACATTTCCCGTA
GAACGTGTAGACTGTTGTTGTTGCTCGAGGTGTGGACGCCTGAGGTTTGA
TGTTTGTGCGACGTCTCTTCGGAGCATCTCTCTTTCCGGGGTGGTTCCAC
TTCTTCTGTCATGGGTACTGTGAGGGGTTGGGTGGGTGGGTGGGCAGACT
TACTGCTTCCTTTTTCCTCCGTATTTTCTCGCTTCTCGAAGGCAATGGAG
ACGATGATAGCAATGACAGAAGTTGCCCGCAGTTTCCGATCGGCCCAATC
TGTTCAAGGGTATTTCCGGGTGACAGAAAATCCCTGATATTCGCTGCTGT
TGTTGCCATAGTCACCGGCGGTGGGTAATACTTCAAAGCATTACGTGTTA
CAGTGGTACCATTGTACCATTCGCATTACCATGCGACGCTTGGAACAGGG
GC
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Coding sequence (CDS) from alignment at Scaffold_463:371418..376069-

>EsuBft190_14a-0001 ID=EsuBft190_14a-0001|Name=EsuBft190_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_463:371418..376069- (Ectocarpus subulatus male Bft15b)
ATGGCTCTTCGAAATTCCATCGCCTCGAGAATGCGAGGGGCGGCTACGGC
GTTGTGTAGGTCGGCAACAGCAGCCGAACGCCAGGTGGCGCCGATTCGAC
TACTGCGGTCAACGACTGCACGGGGTGAGGGGGCGCAGCCGGCCGACACA
TCTGCAGAAGATATGACCAAGAAATTTGGAGATCCTTCGTTTTGGGAAAG
GAAGTACACCGGCCCCCAAGGTCACAAGGCATTCGAATGGTTCCTGTCAT
ACGATAGAGGGTTGAAAGAATACCTTCTTCCTGTATTGGAGTCATTGGTG
ATGATGCCCTCCTCCCACTCTCGAGAAAGCCACAGACTTCTCCACGTTGG
TTGTGGAACCAGCGAGGTGGGCCCCAAGCTAGCGGAGGAACCAGCCTTGT
CGTCGCTTCACGTGACGGATATCGACTCCAGCCCCACCGCCGTGAGGCTA
ATGCAGAAGCGCCACGCGGCTCTCGGCAACTACGACTGTCGCGAGGGGGA
TGTTCTCAACCTTGATTTTCCGGCCGACCGCTTCGATGCGGTCGTGGACA
AGGGGACGCTGGACGCCCTCCTGTGTCGAAGCGCTGAGGACGCCCTAGCT
ATGGTGTCTGAGGTGCATCGGGTTCTCCGCAAGGGAGGCGTGTACGTCCA
GATTTCAGCGGAGGACCCCGAGATGCGCTTGGAACTGCTCACGGAATGCG
GCAGCAGCTCATGCCGTGGGCCGTGGTCTCGCTCTATCTTCAAGGAGCTC
GGAGAGAGTGAGGGATCGGCGGCGTACTATATGTACGTCCTCGTCAAATA
G
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