EsuBft190_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_6a-0001
Unique NameEsuBft190_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:298699..301956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZ61
ProteomeIdEsuBft190_6
Protein domainsIPR005746
Protein domainsIPR013766
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR012336
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Notethioredoxin chloroplastic os:oryza sativa japonica gn:os01g0963400 pe:3 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1057
Hectar predicted targeting categorychloroplast
Evalue2.92e-144
EggNOG OGsCOG0526@1|root,KOG0910@2759|Eukaryota
Ec32 ortholog descriptionthioredoxin-related protein
Ec32 orthologEc-02_006390.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionglycerol ether metabolic process
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0006662
GO0045454
GO0044434
GO0015035
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_6aEsuBft190_6aEctocarpus subulatus male Bft15bgeneScaffold_463 298699..301956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_6a-0001EsuBft190_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 298732..301637 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_6a-0001-exonagat-exon-18531Ectocarpus subulatus male Bft15bexonScaffold_463 298699..298809 +
EsuBft190_6a-0001-exonagat-exon-18532Ectocarpus subulatus male Bft15bexonScaffold_463 299931..300188 +
EsuBft190_6a-0001-exonEsuBft190_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 300488..300568 +
EsuBft190_6a-0001-exonagat-exon-18533Ectocarpus subulatus male Bft15bexonScaffold_463 301350..301956 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_6a-0001-exonagat-five_prime_utr-4606Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 298699..298731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_6a-0001-cdsEsuBft190_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 298732..298809 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_6a-0001-exonagat-three_prime_utr-7029Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 301638..301956 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_6a-0001 ID=EsuBft190_6a-0001|Name=EsuBft190_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1057bp|location=Sequence derived from alignment at Scaffold_463:298699..301956+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAAGTGTTGTGATTTAGGGTACAGCAGCAAACCATGGCTTCCTTGTTGAT
GCTGGCGACAGCAGTGCTGCTGACATTGGTGGGCCCTGGTGCTTCTTTCA
TCATTTCACCGGTATCCAGCACCAGCGCACTTCATCGGAGGTTGCCGTCG
CCTACAGGCATCCGAAACCTTGATGCAAGTCAAAGGGATAGCAGCAACAC
CAACCGTGCCACCAGCAGAAGAGGGAGCACGGCGATGCAAGTGGCAGCTC
GGCTTGTGACGGGGGAAGAGCTAGAGGTGGAGCTGACCGAGTGGGAGCTT
CCGATGATTCTCGACGTCTTCGCCACTTGGTGCGGGCCGTGCATCCAGCT
CAAACCAGAGATCGAGAAGTTGTCTCAAGCGCTCGAGGGAAAGTGCCGCG
TGTTGAAGCTGGACAGCGACGAGGAGGAAGATATGGCGGGTGCGCTCAAT
ATCTACGGCCTCCCCACCGTGATCTACATGAAGGATGGGAAGATCCAGCA
CCGAACAGAGGGATTCCTCCCGGCGGAGGAGATGCTGCAACTGGCGGACA
TCCACCTTTTCGGGAAGCCGCCTCCCGAGGTGACCGACCCTGCCGATGAT
TTGTTCATCGATGCCGACGCTTGCAAACCGCCTGCTTCGGCCGCCGGCGA
TGCTCCGTCAGCGTGTACTCCGCCGCCGCCAGCTGACACCTGCCCCAGCC
CGTCGGCTGATGCTTCGGCTTCGGCTAGCGAACCATAAGCTGTACGATCG
TATGGTAGGCCGGACGGGTTCTTGCTACCTGTTAGGATTTTGCTGTACAG
TACTGCTGTAGCACACCGATTGTTGTGCGTTAATACGCGTACACATGCGT
ACGTCGAGTCGAATCTAGACGTCTGGCCAGGGTTTAATTTTGTGCATGTC
CCGTGCAACTTGCCGGGTTTGCAGGAATAGGCTTCTTTTAGTGTCGTAGA
GTAGAGTAATGAACGCCGCAGTTGATACAGAGTCGTAACCTAGTACGATG
GTGGCTGTCGTCAAGTGGTGCGCTTTTTCCGAGATCAACATCATTAAAAA
TACGTAC
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protein sequence of EsuBft190_6a-0001

>EsuBft190_6 ID=EsuBft190_6|Name=EsuBft190_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=234bp
MASLLMLATAVLLTLVGPGASFIISPVSSTSALHRRLPSPTGIRNLDASQ
RDSSNTNRATSRRGSTAMQVAARLVTGEELEVELTEWELPMILDVFATWC
GPCIQLKPEIEKLSQALEGKCRVLKLDSDEEEDMAGALNIYGLPTVIYMK
DGKIQHRTEGFLPAEEMLQLADIHLFGKPPPEVTDPADDLFIDADACKPP
ASAAGDAPSACTPPPPADTCPSPSADASASASEP
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mRNA from alignment at Scaffold_463:298699..301956+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_6a-0001 ID=EsuBft190_6a-0001|Name=EsuBft190_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3258bp|location=Sequence derived from alignment at Scaffold_463:298699..301956+ (Ectocarpus subulatus male Bft15b)
CAAGTGTTGTGATTTAGGGTACAGCAGCAAACCATGGCTTCCTTGTTGAT
GCTGGCGACAGCAGTGCTGCTGACATTGGTGGGCCCTGGTGCTTCTTTCA
TCATTTCACCGGTGAGCTTTGTTGGGATAAGGCTCTATATTGCCCTGCTA
CCATCGAGCACTTTGGCCGCCCCTTCCGCTGCCTCCACAACTTATCGTTA
GAGTCGTTCAGCACGTTATACAACAGGGTGATACAGAGCAGAGACATACT
ACTGCTGGACAGCCGTACGTATAGTACGTTGATACAGAGAGACCCCCCGC
AGCAGAGAGTGGTGAAGAGACAGCACCACGCCGGGTAGGCTTGCCGAGCG
ACAGACTTCCTTAGATTGCAACAAGGATGGTGCGCTCGGCACGTGACTGC
GTGTATCATATATGTCTTACGTAGTCGAATACTGGTTGGTCAACAGTCTA
CAAACATAACCTCGCCGTTAACTGCACGTATTGTATGTTCTCGAACTATG
CCCACTTGTGCTGCTATCGACCGTACAAGTATGCTAGGTGACATTCGTGG
AAGTGATAACATTCATTGTGGAATACCTTCCACGATTGTGCTGTGTAGGG
TGTGTGGTTAAATGTTGCCGCTGTGATGGAGTACGGTCACACGGTCACAG
CTCATTGCCCCAACTACAACTTCAAAGGGGTGCGATCACTGCTGTTGTTG
TCACATGTGGAGTGCGCTCACGAGCTCACACCAAAAGGGGGATATCCACT
TCTACTTTTGGATGGCACATGCCGCTTGATGGTGTGATTCACTACAGCAG
CACTTACGTTCTTACACTACAACCCTCTCGCAGAAATTTGTAACATCAGC
ATCAGGACGTGTGGTGTGGTGCCATGCACGACTGCTGGGGGAGATTCAGC
AAAGGGGCGACACGTGACAGTTCCTGCCACACGGGTGGATGCTGCTACTG
CGCTGCACATTGTACAGCGGCGTACAGAACAAATGACGTAATTGAGCGTA
AGGTGGCCGCTGGAGTCGGACCCACTGCAGTGCGAACCACGGCGCAGTTA
GCAAGAATGTGTAGCGGTATTGTCGGCCGCCATTGCCTTGGCACGGAGGC
TGTTCGCGCTTGTGTGTATGCTGCTTTATCACGCCGTGACCGTGTCATAA
GCGGGGGGGGGGTCCGTTAACAGAATGCGGCTCAACTTTGGGGTAGGGGT
ATCTTATGCTGCCAACGGTGTGCTACCGGCAGGTATCCAGCACCAGCGCA
CTTCATCGGAGGTTGCCGTCGCCTACAGGCATCCGAAACCTTGATGCAAG
TCAAAGGGATAGCAGCAACACCAACCGTGCCACCAGCAGAAGAGGGAGCA
CGGCGATGCAAGTGGCAGCTCGGCTTGTGACGGGGGAAGAGCTAGAGGTG
GAGCTGACCGAGTGGGAGCTTCCGATGATTCTCGACGTCTTCGCCACTTG
GTGCGGGCCGTGCATCCAGCTCAAACCAGAGATCGAGAAGGTATCTTGTG
TTATCATAGGATGAAAACAGCAGTGGTGTGAGGAAGTGAAATTGCATTAA
GTACGGAATCTCGCCAGAAAATGTGTGCCACTAACGACGGCAAGGACGTT
TTCCGCGGGCTCACAGGTATGCGCTAACCAGTAACCTTTTGCCTGGGTAA
ACTGGCCGCTTCCCTGCCCAATGCCTCGAATTAGGCGATAGAGATGGAAG
ATACATGTACACAACGTATTTCGTTGTTGCGTGTTTCGAACGACCTAGAC
TATTTGTTAACGATGTTGTTGCGACGCATCTGGCGACAGTTGTCTCAAGC
GCTCGAGGGAAAGTGCCGCGTGTTGAAGCTGGACAGCGACGAGGAGGAAG
ATATGGCGGGTGCGCTCAATGTGAGTCTCCACCGCAATTGCACATGACCG
TGCGCGCGCATGATCTGACGCCGCTCGATCACGCGCCGAGAATTATGTAG
ATATGGTACAGATTTGGCCAGTTTGCTCATGTTGGCGTCTGAGTGTGACG
TACCTGGTTACCGTCAGTCTCTTCACTTCTCAGCCTTGGCCGACTTAACT
ACTACCACTCTCCAATTGTTCTGAAGATTCCTTCGAGGGGGACATCTCTC
CCATTAGAGACAGGATTTTCGGGGACCCAACTTTGCCGCTGTGCTTTCTA
AAGCGCTGCCCTGGTATAAGCATTTGGTTTAATGTTTTCATCGAAAGCCC
TGTGTGCAGAGGGCCTGCCAAACGCCCACGAGTGAGAGGACTCGCACGGC
CCCGAGCAGGCTTGATACATGGAATAACACCACACCGTCAGTTGCGGGCA
CATCTGTGGTAGTATGTAACTTTTTGCTGGTCGTCTCGGTGGACAAACAT
TGCCGCCGACGTTGAATTTCCCGGCTTCCGGCAACGCTCAAGTGGGCTGT
GGTGGGAATTCATGGCACATGTACCTTTGGGGGGGATTTTTTTTTACGTT
AACGACCCATGAATGCGTCAAGACACAGCATACTGCTGTAGTGGTAGCTA
CGGTCTTGGCGCAGAGCAGCTGCTGTGCGGGGGCTACCATAATTGTCTTG
GCTTCCTCCCTCCACCCCAGGTCGGAGGTTCCATGTCCACCAAGTCTTTT
TAACACCCATCGCCATACGTACATCATTTCTCCGCGTCCATCGTCCCCCA
GATCTACGGCCTCCCCACCGTGATCTACATGAAGGATGGGAAGATCCAGC
ACCGAACAGAGGGATTCCTCCCGGCGGAGGAGATGCTGCAACTGGCGGAC
ATCCACCTTTTCGGGAAGCCGCCTCCCGAGGTGACCGACCCTGCCGATGA
TTTGTTCATCGATGCCGACGCTTGCAAACCGCCTGCTTCGGCCGCCGGCG
ATGCTCCGTCAGCGTGTACTCCGCCGCCGCCAGCTGACACCTGCCCCAGC
CCGTCGGCTGATGCTTCGGCTTCGGCTAGCGAACCATAAGCTGTACGATC
GTATGGTAGGCCGGACGGGTTCTTGCTACCTGTTAGGATTTTGCTGTACA
GTACTGCTGTAGCACACCGATTGTTGTGCGTTAATACGCGTACACATGCG
TACGTCGAGTCGAATCTAGACGTCTGGCCAGGGTTTAATTTTGTGCATGT
CCCGTGCAACTTGCCGGGTTTGCAGGAATAGGCTTCTTTTAGTGTCGTAG
AGTAGAGTAATGAACGCCGCAGTTGATACAGAGTCGTAACCTAGTACGAT
GGTGGCTGTCGTCAAGTGGTGCGCTTTTTCCGAGATCAACATCATTAAAA
ATACGTAC
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Coding sequence (CDS) from alignment at Scaffold_463:298699..301956+

>EsuBft190_6a-0001 ID=EsuBft190_6a-0001|Name=EsuBft190_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=705bp|location=Sequence derived from alignment at Scaffold_463:298699..301956+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCCTTGTTGATGCTGGCGACAGCAGTGCTGCTGACATTGGTGGG
CCCTGGTGCTTCTTTCATCATTTCACCGGTATCCAGCACCAGCGCACTTC
ATCGGAGGTTGCCGTCGCCTACAGGCATCCGAAACCTTGATGCAAGTCAA
AGGGATAGCAGCAACACCAACCGTGCCACCAGCAGAAGAGGGAGCACGGC
GATGCAAGTGGCAGCTCGGCTTGTGACGGGGGAAGAGCTAGAGGTGGAGC
TGACCGAGTGGGAGCTTCCGATGATTCTCGACGTCTTCGCCACTTGGTGC
GGGCCGTGCATCCAGCTCAAACCAGAGATCGAGAAGTTGTCTCAAGCGCT
CGAGGGAAAGTGCCGCGTGTTGAAGCTGGACAGCGACGAGGAGGAAGATA
TGGCGGGTGCGCTCAATATCTACGGCCTCCCCACCGTGATCTACATGAAG
GATGGGAAGATCCAGCACCGAACAGAGGGATTCCTCCCGGCGGAGGAGAT
GCTGCAACTGGCGGACATCCACCTTTTCGGGAAGCCGCCTCCCGAGGTGA
CCGACCCTGCCGATGATTTGTTCATCGATGCCGACGCTTGCAAACCGCCT
GCTTCGGCCGCCGGCGATGCTCCGTCAGCGTGTACTCCGCCGCCGCCAGC
TGACACCTGCCCCAGCCCGTCGGCTGATGCTTCGGCTTCGGCTAGCGAAC
CATAA
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