EsuBft2743_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2743_2a-0001
Unique NameEsuBft2743_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:90300..91060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3W4
ProteomeIdEsuBft2743_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7G3W4|-
Length42
Hectar predicted targeting categoryother localisation
Evalue5.67e-41
EggNOG OGsKOG3704@1|root,KOG3704@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-09_001630.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionheparan sulfate sulfotransferase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2743_2aEsuBft2743_2aEctocarpus subulatus male Bft15bgeneScaffold_463 90300..91060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2743_2a-0001-exonagat-exon-3292Ectocarpus subulatus male Bft15bexonScaffold_463 90300..90561 -
EsuBft2743_2a-0001-exonEsuBft2743_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 90903..91060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2743_2a-0001-cdsEsuBft2743_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 90300..90561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2743_2a-0001EsuBft2743_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 90300..91060 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2743_2a-0001 ID=EsuBft2743_2a-0001|Name=EsuBft2743_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=420bp|location=Sequence derived from alignment at Scaffold_463:90300..91060- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAACGACTTGCCGGGCGTCTTGGCGGAGGTGGCCGCGCACATCGG
CCTCCCGGGATCCGACTTCGACTCCGACCGTCCCGTGCAGCACAGCACCG
GCCATTGCCCGACTCTCGGCCGTGACGAGGACCCCGACTTTTTCGGCGAG
GGGGGCAGGTATGACAAGATGTTCGAGGAAGAGGACCGCTTCCGGGAATG
GTATCGGCCGCACAACGAGGTGTGTTTGGCGTTGCTTGACCGCTCGAAGC
GTGGTGCTTCCGTTGCTTTGAGTCCTGCTTGCTTGCTTAGAGTGAAACGC
ACCGCGTGCGGGGAGAACCATGCCGGGCACCCCGTTTCCTCTCCTCTAGT
CCCTCTTGGTTTCCGATTCTCATCTTCCACGCCTCCTCCCCGGGAGAAAT
TGCGGGGAAGGCGGGGATGA
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protein sequence of EsuBft2743_2a-0001

>EsuBft2743_2 ID=EsuBft2743_2|Name=EsuBft2743_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=139bp
MMNDLPGVLAEVAAHIGLPGSDFDSDRPVQHSTGHCPTLGRDEDPDFFGE
GGRYDKMFEEEDRFREWYRPHNEVCLALLDRSKRGASVALSPACLLRVKR
TACGENHAGHPVSSPLVPLGFRFSSSTPPPREKLRGRRG
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mRNA from alignment at Scaffold_463:90300..91060-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2743_2a-0001 ID=EsuBft2743_2a-0001|Name=EsuBft2743_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=761bp|location=Sequence derived from alignment at Scaffold_463:90300..91060- (Ectocarpus subulatus male Bft15b)
ATGATGAACGACTTGCCGGGCGTCTTGGCGGAGGTGGCCGCGCACATCGG
CCTCCCGGGATCCGACTTCGACTCCGACCGTCCCGTGCAGCACAGCACCG
GCCATTGCCCGACTCTCGGCCGTGACGAGGACCCCGACTTTTTCGGCGAG
GGGGGCAGGTGAGAAGAGGAGAGAAGGGGAGAGGACAGTTGGAATGGTCC
TCAGCAGCGGCAGCACCAGCACTAGCACCAGTAGCAAATAGCAACGCCAG
CACCAGCAGCGTGGGATGGAGGGCTAACCAATACCGCAATCACCGCGCAT
AATGCGAAATGTTTGTATTTGGTCGGGTTGCGGACCCCTTCCTCCTCACC
GGAGAGGTCAGTCTTCTGCACGGAATTACTACTGGTGGCCCGGCCTTGTT
TCGCGGTGATCACAAGGCTTTTCTGCCTCTGCAAGAATTCACAACCTTGT
GATTCTCTCCGTTTCGCTTTCGTTTGTAACGTGGGACGCGCGCGAGTAGG
TATGACAAGATGTTCGAGGAAGAGGACCGCTTCCGGGAATGGTATCGGCC
GCACAACGAGGTGTGTTTGGCGTTGCTTGACCGCTCGAAGCGTGGTGCTT
CCGTTGCTTTGAGTCCTGCTTGCTTGCTTAGAGTGAAACGCACCGCGTGC
GGGGAGAACCATGCCGGGCACCCCGTTTCCTCTCCTCTAGTCCCTCTTGG
TTTCCGATTCTCATCTTCCACGCCTCCTCCCCGGGAGAAATTGCGGGGAA
GGCGGGGATGA
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Coding sequence (CDS) from alignment at Scaffold_463:90300..91060-

>EsuBft2743_2a-0001 ID=EsuBft2743_2a-0001|Name=EsuBft2743_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=420bp|location=Sequence derived from alignment at Scaffold_463:90300..91060- (Ectocarpus subulatus male Bft15b)
ATGATGAACGACTTGCCGGGCGTCTTGGCGGAGGTGGCCGCGCACATCGG
CCTCCCGGGATCCGACTTCGACTCCGACCGTCCCGTGCAGCACAGCACCG
GCCATTGCCCGACTCTCGGCCGTGACGAGGACCCCGACTTTTTCGGCGAG
GGGGGCAGGTATGACAAGATGTTCGAGGAAGAGGACCGCTTCCGGGAATG
GTATCGGCCGCACAACGAGGTGTGTTTGGCGTTGCTTGACCGCTCGAAGC
GTGGTGCTTCCGTTGCTTTGAGTCCTGCTTGCTTGCTTAGAGTGAAACGC
ACCGCGTGCGGGGAGAACCATGCCGGGCACCCCGTTTCCTCTCCTCTAGT
CCCTCTTGGTTTCCGATTCTCATCTTCCACGCCTCCTCCCCGGGAGAAAT
TGCGGGGAAGGCGGGGATGA
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