EsuBft1068_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1068_3a-0001
Unique NameEsuBft1068_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_451contigScaffold_451:1504859..1506072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1068_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length72
Evalue5.77e-28
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_3aEsuBft1068_3aEctocarpus subulatus male Bft15bgeneScaffold_451 1504859..1506072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_3a-0001EsuBft1068_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_451 1504911..1506052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_3a-0001-exonEsuBft1068_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_451 1504859..1505261 -
EsuBft1068_3a-0001-exonagat-exon-41710Ectocarpus subulatus male Bft15bexonScaffold_451 1505445..1505609 -
EsuBft1068_3a-0001-exonagat-exon-41709Ectocarpus subulatus male Bft15bexonScaffold_451 1505915..1506072 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_3a-0001-exonagat-three_prime_utr-660Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_451 1504859..1504910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_3a-0001-cdsEsuBft1068_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_451 1504911..1505261 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_3a-0001-exonagat-five_prime_utr-406Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_451 1506053..1506072 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1068_3a-0001 ID=EsuBft1068_3a-0001|Name=EsuBft1068_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=726bp|location=Sequence derived from alignment at Scaffold_451:1504859..1506072- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCAAGCGCACAAGTAATGCANACACGCATCAAATTGACGGTTTTG
AAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGG
AAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGGAAGCAGCGG
AAACCATCGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAA
GAACAGAATCTAAAGAAAGAAACCAAAGGTAAGGAGGGTCTAGAAGTGTA
CGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAA
TGGATGCAGGAACAAAGCTTAAGGAAGGAATAGGGTTCAAGGACTACCTA
CATGGACCAACGGATGCAGGGACAAAGCTTAAGGTCAAATTTAGGTCCGG
GGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACG
AAGACGACGAGCTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTT
CATGTAGTCGCGGAATGTCCGTGGTACAAAAAGGAGAGGGAAGTGTACGT
GACTGAGCTGGGAAAAATAGATGGGACGTACAGGGAGATGTTTGAGGCAT
GGAGTAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAAGTGGGTT
GAAAGGCGGGAAGGGATATGGTGAGGATAAACAGACTGTAGGGAAGACAT
TTTTGAGCCACCTTTGGCAAAGTAGG
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protein sequence of EsuBft1068_3a-0001

>EsuBft1068_3 ID=EsuBft1068_3|Name=EsuBft1068_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=217bp
MXTRIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMEAAETIGFKE
KISVACAEREEQNLKKETKGKEGLEVYGMLKEGIGFKDYLHGPMDAGTKL
KEGIGFKDYLHGPTDAGTKLKVKFRSGDIGLRERRRRHRTVDDEDDELKC
DCGFECEDRVHVVAECPWYKKEREVYVTELGKIDGTYREMFEAWSREERT
VAVLGHRKWVERREGIW
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mRNA from alignment at Scaffold_451:1504859..1506072-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1068_3a-0001 ID=EsuBft1068_3a-0001|Name=EsuBft1068_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1214bp|location=Sequence derived from alignment at Scaffold_451:1504859..1506072- (Ectocarpus subulatus male Bft15b)
ATGCTCCAAGCGCACAAGTAATGCANACACGCATCAAATTGACGGTTTTG
AAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGG
AAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGGAAGCAGCGG
AAACCATCGTAGGATGCTCCAAGTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATCGACGAAGATGAAACGCTGGAAAC
GGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGA
GAGAAGAACAGAATCTAAAGAAAGAAACCAAAGGTAAGGAGGGTCTAGAA
GTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGG
ACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACA
TAGGCCTTCGAGAACGTCGACGAAGACATAGGACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTG
TCTCTTATACACATCTAGATGTGTATAAGAGACGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAACG
GATGCAGGGACAAAGCTTAAGGTCAAATTTAGGTCCGGGGACATAGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAGACGACGAGC
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTGGTACAAAAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGAGTAGAGAGG
AAAGGACGGTAGCTGTACTGGGGCATAGGAAGTGGGTTGAAAGGCGGGAA
GGGATATGGTGAGGATAAACAGACTGTAGGGAAGACATTTTTGAGCCACC
TTTGGCAAAGTAGG
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Coding sequence (CDS) from alignment at Scaffold_451:1504859..1506072-

>EsuBft1068_3a-0001 ID=EsuBft1068_3a-0001|Name=EsuBft1068_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=654bp|location=Sequence derived from alignment at Scaffold_451:1504859..1506072- (Ectocarpus subulatus male Bft15b)
ATGCANACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCC
GCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAG
AACTCGAGGCGGCGCAGATGGAAGCAGCGGAAACCATCGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTAAAGAAAGA
AACCAAAGGTAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAACGGATGCAGG
GACAAAGCTTAAGGTCAAATTTAGGTCCGGGGACATAGGCCTTCGAGAAC
GTCGACGAAGACATAGGACGGTAGACGACGAAGACGACGAGCTCAAATGT
GATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCC
GTGGTACAAAAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAG
ATGGGACGTACAGGGAGATGTTTGAGGCATGGAGTAGAGAGGAAAGGACG
GTAGCTGTACTGGGGCATAGGAAGTGGGTTGAAAGGCGGGAAGGGATATG
GTGA
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