EsuBft1068_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1068_2a-0001
Unique NameEsuBft1068_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_451contigScaffold_451:1502549..1504755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog5037.XP_001538709.1
ProteomeIdEsuBft1068_2
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl4751|Fungi
Length1819
Hectar predicted targeting categoryother localisation
Evalue5.52e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20FR9@147545|Eurotiomycetes,3B52A@33183|Onygenales
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K14835
EC2.1.1.310
Descriptionto reverse transcriptase
COG categoryL
BRITEko00000,ko01000,ko03009
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_2aEsuBft1068_2aEctocarpus subulatus male Bft15bgeneScaffold_451 1502549..1504755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_2a-0001EsuBft1068_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_451 1502869..1504735 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_2a-0001-exonagat-exon-41707Ectocarpus subulatus male Bft15bexonScaffold_451 1502549..1503405 +
EsuBft1068_2a-0001-exonagat-exon-41708Ectocarpus subulatus male Bft15bexonScaffold_451 1503473..1503655 +
EsuBft1068_2a-0001-exonEsuBft1068_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_451 1503885..1504085 +
EsuBft1068_2a-0001-exonagat-exon-41706Ectocarpus subulatus male Bft15bexonScaffold_451 1504178..1504755 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_2a-0001-exonagat-five_prime_utr-405Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_451 1502549..1502868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_2a-0001-cdsEsuBft1068_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_451 1502869..1503405 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_2a-0001-exonagat-three_prime_utr-659Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_451 1504736..1504755 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1068_2a-0001 ID=EsuBft1068_2a-0001|Name=EsuBft1068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_451:1502549..1504755+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACGGCTTTTCTCAACTCCAGGATGTCCAAGAAAGACAAACCTAT
CTACGTAATACCTCCGAAGGGGTTCACGTGCTCGCAGGAGCAAACAAAGC
TGGTCTGGCGACTTAAGGCGTGGCTGTACGGCCTACGCCTCTTTCCGAAA
CCTGGAAAGGGACGTTTCACCTGTTCCTGCTGGAGATCGGGTTCGTCCCG
AGCACCGCCGATCCGTGTCTGTACACGTTGAACGGGGGAGAGGTCATCCT
GCTCGTCTACGTGGACGACATCCTACTTACCGGAGCCAAGGAGGAGCTCG
TGACGACCATTATCGAACAGATGAAGGAGCGCTTTGAGACGGTGGACCTG
GGAGAAGCAAAGTTTATCCTGGGAATGGCCATCCAGCGCAACCTCGAAGC
GGGCACCATCCTACTGACGCAAGAAGCTTACACCAAGGCCGTGCTTGCTA
AATTCGGCATGGCTGACGTGCGCGCGACGGCAACGCCGGCCGAGAAGGAG
CCGGTTACGACCAAGGAAGAAAATGCTCTGTCGCCGGAGCAAACTACCAT
GTTCCGGTCGGCTACGGGTTCGGTCCTATACATCAGCAGGGGATCGAGGC
CAGACATCTCTCACTCGGTGCTGGTACTCACGAAGAGCATGGCTGAACCA
GGACCGAAGGCGCTTGTCAAACTGAAACGACTCATGCGCTACCTGAAGGG
GACGACCTCTTTGGGCATCACCTACCGCAAGGACGCGCAAGGCGGAGATA
AACTAACCGCTTACGTCGACTCTGACTTCGCAGGCGATCTTGACGATCGA
AAATCGACTACTGGGGTCGTTCTTACCCTCGCACGTGGCCCGGTGGACAC
GAAAAGTCACAAGCGCTCCTGCCGCGAGAGTTCTTTTTCCTTCTCGTCGT
GGTCGTCGGACGGCTCGGGGAGTGCCCGGGATGAATGGGGGCCCCCCCGG
CGCCGGCCAGGGCTGGCGGAGCGAGGGGCCGTCCAGCACGTGCGGGCCTC
GAGTTCTCGCCGAAAGCAGGGCGCGGGCTCGGGGGGGGAGTATGTGCGGC
CATACCTGCCGTTGCCTGCCGGCAACACGTGGACAGCCCTACTTACGTTG
GTAGGTCGGCTACGCCATGTAGTCAGGCAAGGCCGACAGGCGGGCGGTGA
TTTCCACGCCACCGCGTGGGCGCCAGAGTGGACGTCGCTCGCTCAACAAT
TTCTAGTGAGTTGCGTAGCGGCAGAAAGTGGGGAAGGGCCGCTAATTCAC
AAAGCGGTTCACGAGCAGGTCAATTCCATCCCGATCATGTGGGCACAATT
CTCCGTTCCGATCCACACACCCCTGCAAGATTGGATAGTCCAACTAAAAG
AACTCGTAGACGGGTTGTCGTGTTTCGGGGACTCGTGCGACGCACAAATC
GTCTCAACCGCCATTGAAGGTCTGGCCGTGCAGTACCCAGAGATATCCCT
TCTCGTGAAACCCAAACTTAAGAAAGCGGTGACTCTGGCGGACATGTGGA
AGTGCTTTCGGGATGACGAGATAGAGGAAAGTAACGCCGTAGCCAACGCA
CCCCCTGCTTTAGGATCGGTGTCCGCCAGATCAACACATTCTCACCAACC
AAGGGTTCACGCGGTGGTTCGGGGTCACTCGTTTGAAACCTTGCCTCCTG
GGCGCGAGTGTGAATCAACCAGTGACGAGGAAGGATACCAACGCACATCT
CGGCACCTGTACCCTGTGCTCGGTAAGGGACCAGACAAAACACATTTACG
TCGAACAACCCTTCGTTCCGCCTCTGGAAATACGCCGCTGATTCAGTAGA
GGGGGGGGGGGGGCGTACT
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protein sequence of EsuBft1068_2a-0001

>EsuBft1068_2 ID=EsuBft1068_2|Name=EsuBft1068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=492bp
MKERFETVDLGEAKFILGMAIQRNLEAGTILLTQEAYTKAVLAKFGMADV
RATATPAEKEPVTTKEENALSPEQTTMFRSATGSVLYISRGSRPDISHSV
LVLTKSMAEPGPKALVKLKRLMRYLKGTTSLGITYRKDAQGGDKLTAYVD
SDFAGDLDDRKSTTGVVLTLARGPVDTKSHKRSCRESSFSFSSWSSDGSG
SARDEWGPPRRRPGLAERGAVQHVRASSSRRKQGAGSGGEYVRPYLPLPA
GNTWTALLTLVGRLRHVVRQGRQAGGDFHATAWAPEWTSLAQQFLVSCVA
AESGEGPLIHKAVHEQVNSIPIMWAQFSVPIHTPLQDWIVQLKELVDGLS
CFGDSCDAQIVSTAIEGLAVQYPEISLLVKPKLKKAVTLADMWKCFRDDE
IEESNAVANAPPALGSVSARSTHSHQPRVHAVVRGHSFETLPPGRECEST
SDEEGYQRTSRHLYPVLGKGPDKTHLRRTTLRSASGNTPLIQ
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mRNA from alignment at Scaffold_451:1502549..1504755+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1068_2a-0001 ID=EsuBft1068_2a-0001|Name=EsuBft1068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2207bp|location=Sequence derived from alignment at Scaffold_451:1502549..1504755+ (Ectocarpus subulatus male Bft15b)
ATGAAGACGGCTTTTCTCAACTCCAGGATGTCCAAGAAAGACAAACCTAT
CTACGTAATACCTCCGAAGGGGTTCACGTGCTCGCAGGAGCAAACAAAGC
TGGTCTGGCGACTTAAGGCGTGGCTGTACGGCCTACGCCTCTTTCCGAAA
CCTGGAAAGGGACGTTTCACCTGTTCCTGCTGGAGATCGGGTTCGTCCCG
AGCACCGCCGATCCGTGTCTGTACACGTTGAACGGGGGAGAGGTCATCCT
GCTCGTCTACGTGGACGACATCCTACTTACCGGAGCCAAGGAGGAGCTCG
TGACGACCATTATCGAACAGATGAAGGAGCGCTTTGAGACGGTGGACCTG
GGAGAAGCAAAGTTTATCCTGGGAATGGCCATCCAGCGCAACCTCGAAGC
GGGCACCATCCTACTGACGCAAGAAGCTTACACCAAGGCCGTGCTTGCTA
AATTCGGCATGGCTGACGTGCGCGCGACGGCAACGCCGGCCGAGAAGGAG
CCGGTTACGACCAAGGAAGAAAATGCTCTGTCGCCGGAGCAAACTACCAT
GTTCCGGTCGGCTACGGGTTCGGTCCTATACATCAGCAGGGGATCGAGGC
CAGACATCTCTCACTCGGTGCTGGTACTCACGAAGAGCATGGCTGAACCA
GGACCGAAGGCGCTTGTCAAACTGAAACGACTCATGCGCTACCTGAAGGG
GACGACCTCTTTGGGCATCACCTACCGCAAGGACGCGCAAGGCGGAGATA
AACTAACCGCTTACGTCGACTCTGACTTCGCAGGCGATCTTGACGATCGA
AAATCGACTACTGGGGTCGTTCTTACCCTCGCACGTGGCCCGGTGGACAC
GAAAAGTGTAAAGCAGACGGTCACTGCCACGTCGTCGGCTGAGGCAGAAT
ACGTCGCATTGTCCAAGGCGACAGCACAAGCGCTCCTGCCGCGAGAGTTC
TTTTTCCTTCTCGTCGTGGTCGTCGGACGGCTCGGGGAGTGCCCGGGATG
AATGGGGGCCCCCCCGGCGCCGGCCAGGGCTGGCGGAGCGAGGGGCCGTC
CAGCACGTGCGGGCCTCGAGTTCTCGCCGAAAGCAGGGCGCGGGCTCGGG
GGGGGAGGTGACCGCTAGAGTCGGCGTTCGGGGGAGGACGAGAGGGAGCG
TCGACACAGCCGAGCGTCGTCTTCGAGAGGCTCGGAGGCTGGTGGATCTT
CCCGGGCTTCGAGACCAACCCGTGTGCCGTTTTCTTTGTCCCCAAGCTCA
CGATCTCCTTCCCCACCCCCTCACAACCCAAAGGTGGCCTCTAATCTAAA
CTCATGGCACTCAATGTGCACCGCATGTTTCAGCAGTATGTGCGGCCATA
CCTGCCGTTGCCTGCCGGCAACACGTGGACAGCCCTACTTACGTTGGTAG
GTCGGCTACGCCATGTAGTCAGGCAAGGCCGACAGGCGGGCGGTGATTTC
CACGCCACCGCGTGGGCGCCAGAGTGGACGTCGCTCGCTCAACAATTTCT
AGTGAGTTGCGTAGCGGCAGAAAGTGGGGAAGGGCCGGTAAACAAAATCT
TGTCCATCGGCCGGGACCTCGACGACACAATCCAAGATAGAAAGCTCAAC
GGCCCACAAGGGTTTGCCGAGCTTGTCAGCTAATTCACAAAGCGGTTCAC
GAGCAGGTCAATTCCATCCCGATCATGTGGGCACAATTCTCCGTTCCGAT
CCACACACCCCTGCAAGATTGGATAGTCCAACTAAAAGAACTCGTAGACG
GGTTGTCGTGTTTCGGGGACTCGTGCGACGCACAAATCGTCTCAACCGCC
ATTGAAGGTCTGGCCGTGCAGTACCCAGAGATATCCCTTCTCGTGAAACC
CAAACTTAAGAAAGCGGTGACTCTGGCGGACATGTGGAAGTGCTTTCGGG
ATGACGAGATAGAGGAAAGTAACGCCGTAGCCAACGCACCCCCTGCTTTA
GGATCGGTGTCCGCCAGATCAACACATTCTCACCAACCAAGGGTTCACGC
GGTGGTTCGGGGTCACTCGTTTGAAACCTTGCCTCCTGGGCGCGAGTGTG
AATCAACCAGTGACGAGGAAGGATACCAACGCACATCTCGGCACCTGTAC
CCTGTGCTCGGTAAGGGACCAGACAAAACACATTTACGTCGAACAACCCT
TCGTTCCGCCTCTGGAAATACGCCGCTGATTCAGTAGAGGGGGGGGGGGG
GCGTACT
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Coding sequence (CDS) from alignment at Scaffold_451:1502549..1504755+

>EsuBft1068_2a-0001 ID=EsuBft1068_2a-0001|Name=EsuBft1068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1479bp|location=Sequence derived from alignment at Scaffold_451:1502549..1504755+ (Ectocarpus subulatus male Bft15b)
ATGAAGGAGCGCTTTGAGACGGTGGACCTGGGAGAAGCAAAGTTTATCCT
GGGAATGGCCATCCAGCGCAACCTCGAAGCGGGCACCATCCTACTGACGC
AAGAAGCTTACACCAAGGCCGTGCTTGCTAAATTCGGCATGGCTGACGTG
CGCGCGACGGCAACGCCGGCCGAGAAGGAGCCGGTTACGACCAAGGAAGA
AAATGCTCTGTCGCCGGAGCAAACTACCATGTTCCGGTCGGCTACGGGTT
CGGTCCTATACATCAGCAGGGGATCGAGGCCAGACATCTCTCACTCGGTG
CTGGTACTCACGAAGAGCATGGCTGAACCAGGACCGAAGGCGCTTGTCAA
ACTGAAACGACTCATGCGCTACCTGAAGGGGACGACCTCTTTGGGCATCA
CCTACCGCAAGGACGCGCAAGGCGGAGATAAACTAACCGCTTACGTCGAC
TCTGACTTCGCAGGCGATCTTGACGATCGAAAATCGACTACTGGGGTCGT
TCTTACCCTCGCACGTGGCCCGGTGGACACGAAAAGTCACAAGCGCTCCT
GCCGCGAGAGTTCTTTTTCCTTCTCGTCGTGGTCGTCGGACGGCTCGGGG
AGTGCCCGGGATGAATGGGGGCCCCCCCGGCGCCGGCCAGGGCTGGCGGA
GCGAGGGGCCGTCCAGCACGTGCGGGCCTCGAGTTCTCGCCGAAAGCAGG
GCGCGGGCTCGGGGGGGGAGTATGTGCGGCCATACCTGCCGTTGCCTGCC
GGCAACACGTGGACAGCCCTACTTACGTTGGTAGGTCGGCTACGCCATGT
AGTCAGGCAAGGCCGACAGGCGGGCGGTGATTTCCACGCCACCGCGTGGG
CGCCAGAGTGGACGTCGCTCGCTCAACAATTTCTAGTGAGTTGCGTAGCG
GCAGAAAGTGGGGAAGGGCCGCTAATTCACAAAGCGGTTCACGAGCAGGT
CAATTCCATCCCGATCATGTGGGCACAATTCTCCGTTCCGATCCACACAC
CCCTGCAAGATTGGATAGTCCAACTAAAAGAACTCGTAGACGGGTTGTCG
TGTTTCGGGGACTCGTGCGACGCACAAATCGTCTCAACCGCCATTGAAGG
TCTGGCCGTGCAGTACCCAGAGATATCCCTTCTCGTGAAACCCAAACTTA
AGAAAGCGGTGACTCTGGCGGACATGTGGAAGTGCTTTCGGGATGACGAG
ATAGAGGAAAGTAACGCCGTAGCCAACGCACCCCCTGCTTTAGGATCGGT
GTCCGCCAGATCAACACATTCTCACCAACCAAGGGTTCACGCGGTGGTTC
GGGGTCACTCGTTTGAAACCTTGCCTCCTGGGCGCGAGTGTGAATCAACC
AGTGACGAGGAAGGATACCAACGCACATCTCGGCACCTGTACCCTGTGCT
CGGTAAGGGACCAGACAAAACACATTTACGTCGAACAACCCTTCGTTCCG
CCTCTGGAAATACGCCGCTGATTCAGTAG
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