EsuBft1686_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1686_9a-0001
Unique NameEsuBft1686_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:325094..327596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G022
ProteomeIdEsuBft1686_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length99
Hectar predicted targeting categoryother localisation
Evalue2.56e-30
EggNOG OGs28IRF@1|root,2QR2R@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_9aEsuBft1686_9aEctocarpus subulatus male Bft15bgeneScaffold_444 325094..327596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_9a-0001EsuBft1686_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 325797..327588 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_9a-0001-exonagat-exon-28642Ectocarpus subulatus male Bft15bexonScaffold_444 325094..325808 -
EsuBft1686_9a-0001-exonagat-exon-28641Ectocarpus subulatus male Bft15bexonScaffold_444 326249..326311 -
EsuBft1686_9a-0001-exonEsuBft1686_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 327376..327596 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_9a-0001-exonagat-three_prime_utr-5734Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 325094..325796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_9a-0001-cdsEsuBft1686_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 325797..325808 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_9a-0001-exonagat-five_prime_utr-3727Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 327589..327596 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1686_9a-0001 ID=EsuBft1686_9a-0001|Name=EsuBft1686_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=999bp|location=Sequence derived from alignment at Scaffold_444:325094..327596- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGTGCCCATGGTCGGCGTGATGGATGCTCGTTCGGTGCTCAAAGCGGCA
CGACTTTTCGGCTTGTGCAACCTACTCGGACAGAGTGGCGGCGTGTTTGC
CGGAAGCCATGAACCTGACCACGACCATCGTGGCCTTCAAACCAGCTCAA
ACATTGTTTTCATCGAAGCCGTTGTAGGCACGGCATTCACCACTGATGAG
GAGAGTGGGCTGCAGCTCAAGAACGCTGAGCGCGGTGTAGCCGGAAATGC
GGCGACAACCATCACCACGTCTGCCACAGCCCAGGGGCCACGGTAAGAGC
GTCGCGCGGATGCATGATTGCCACTTGTTCATATCACACGCATCCATGGG
GGAAGTAGCCCCCCCCCGCACGCGTGATGTGGGCAGGGATAATTCCGGCA
CTTTTTTTCTTTGGCGTGGAACATTTGTGATCCGAAGTACTACCTCTGTC
CGAGAATATAAGCAAGGTTTGGAAATCCGGGAATATAAGCAAGCTTTCTC
GATGAAGGTGTTTCAAGGTGTTTTGGACACCGTTTCCTTCCTATTTTTTT
GCGTCAAGCTCGGATATGATAAGCGGCCAAGAAAAAACCAACATAAGAGG
GGATGATAAGGTTTCATCCCCTCCCCGGAGAAACATTGATTTCCCTGCCA
TAGCGCTCAGTAGGGAAAAAGGGGTCCCATTTTTTCTCTCGTTTGCGGCA
ATGAATAGTGCTTTTTTCCTCGTTTTTTTTTCTTTGTATTTTTGGGTACT
TGAACAACCTGTACAATCACGTTGCGAAGTATCTTCGATAGTTCTTTGGT
GCTGACCGGGACCAAAGTTCCAGAGTGGCAAAAATCAGCAACTTCGAGGG
GCCAAAATGAAGGGAAGGCGTAAAAAAAAAAAAAAAAAAAAGCGTTTTTC
CGAAAAAAAAAGGTGTTTGAACCCAGGATCGAACTCACGGCCACTGAACA
GCTCGCTTTCGCGGTGTATTTTGCCTTACGACCAAACCTTGCTTATATT
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protein sequence of EsuBft1686_9a-0001

>EsuBft1686_9 ID=EsuBft1686_9|Name=EsuBft1686_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MVGVMDARSVLKAARLFGLCNLLGQSGGVFAGSHEPDHDHRGLQTSSNIV
FIEAVVGTAFTTDEESGLQLKNAERGVAGNAATTITTSATAQGPR
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mRNA from alignment at Scaffold_444:325094..327596-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1686_9a-0001 ID=EsuBft1686_9a-0001|Name=EsuBft1686_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2503bp|location=Sequence derived from alignment at Scaffold_444:325094..327596- (Ectocarpus subulatus male Bft15b)
CAGTGCCCATGGTCGGCGTGATGGATGCTCGTTCGGTGCTCAAAGCGGCA
CGACTTTTCGGCTTGTGCAACCTACTCGGACAGAGTGGCGGCGTGTTTGC
CGGAAGCCATGAACCTGACCACGACCATCGTGGCCTTCAAACCAGCTCAA
ACATTGTTTTCATCGAAGCCGTTGTAGGCACGGCATTCACCACTGATGAG
GAGAGTGGGCTGCAGCTCAAGGTACATACTGTCTAGTGCCGGGTGTTCGG
CTCGGAGGGAATATATATTTTTTGATGCAGAAACGAGAGGGAATCCACGT
GTTGTTGAATTGACGTGAAATATTGTCATTTCAGACAGGTTTTTTTTTGA
GAACCGTCGAAACATCAAGCGACGCGACAAGAATGACACTTCAAACATCG
CCAGACTCCCACACACACGCTTGCTCTGCTACCGTCACCAATCACGAAAG
GAGCGCCGTCAGCAGCAAAAACATTATTGACCACGCCTACTGGTTGCTCC
TAGCGGTCCAGCACACACACACACACGCGTCGGAGAGTTCTCACGGCGTC
GCAGTGGCCTGACTCGCGTGTTCGGCGCGCGCCTTCGGTAGGTGCGCCGT
CAGGATTGCGCACGGGCTTTCAGCAGCAACAAGGGGCTTAGGCAGTAGTC
GTATAGGAGTCCCGCCCTCGAACGGAACACAAATGAAGGAGTAGGGGAGA
GTACACGGACGTGGCCGGTCAGTAGGTGCCCCTTTCCAGCCCCCTCACGG
GGTTGGGCGCTCTGCTGCCTCAGTGACATTGGTACACAGCAGCAGCAGTG
CAGCGAGCAGATACCTCAGCACCAACGGTTTGACGCCTGGGAAGTCACGG
CGGCAAAGGAAGTAAGGTCGGCGGGATGAGGCAGAGGAGTAGACACTCAG
TCCCCTGGGAGCCTGGGGCAAGCCTGGGATTGTGAGTTTTCGCTTCAGCA
TGTCGGCCCTCCCTGGGTTGCGTCAACACTACCATTTCTTTTTTTTTCTC
CTATAGTCTAGGCACCAACGGGCACACTCGGTGCGACTTTTTTCGCGTCA
ACACCCTCAAACCATTACTAGATGTTGGCGTCAATCCTCAAAGGTCAAAA
TTCCGCGTCATTCCACAGTGGATACCCTAATACATTGGATACCTACCGTC
ACCGCTCCCGTGATTACCTACACTCCCCGCCTCCTTGCGGCGTTTCTTCT
CCACGCGCTCCTCTAACTAACTACAGCACTCCGCTGTACACCAGTAGTTT
GATTGTGTGTTTTGCTCCGTTGATGTCGACCACAGAACGCTGAGCGCGGT
GTAGCCGGAAATGCGGCGACAACCATCACCACGTCTGCCACAGCCCAGGT
ATTTCAAACAAGTTTAACGTATTCTGTTGGCAGGTTAGGCACATGGAGTT
TGGGGATATTTGCCGACAAAATACATGTGTGCACCTGCGTATGTAGTTTA
TTTTGAAGATACATCTGCGGCACTACAGCATAATGTAGAGTACTGCTTTA
TTTTACATGGTACAGCAGTAGATTGACGCACATTAGCCCTGGACTGTGCC
TCCTGACGAACAGCAGTTGTAGTACTGCTGTTGTGGAAGTCGTATCTTGG
TTTTCTGCGTCAGTCGTGCGTGTCAGCATGACCATCATGTAGTATCGTGT
GTGACTTTCCTGCGTAGCCGCTACCTGAATACCGGTATTTGTGACGCTCT
CTCCTCTCGCTGCTTCTGCCACTTGCGACCGACCGCATCCCCTCTTCTTT
ACAGTACGAATTTTACTTCACGCCGCCGAGCATCGCAGGGGCCACGGTAA
GAGCGTCGCGCGGATGCATGATTGCCACTTGTTCATATCACACGCATCCA
TGGGGGAAGTAGCCCCCCCCCGCACGCGTGATGTGGGCAGGGATAATTCC
GGCACTTTTTTTCTTTGGCGTGGAACATTTGTGATCCGAAGTACTACCTC
TGTCCGAGAATATAAGCAAGGTTTGGAAATCCGGGAATATAAGCAAGCTT
TCTCGATGAAGGTGTTTCAAGGTGTTTTGGACACCGTTTCCTTCCTATTT
TTTTGCGTCAAGCTCGGATATGATAAGCGGCCAAGAAAAAACCAACATAA
GAGGGGATGATAAGGTTTCATCCCCTCCCCGGAGAAACATTGATTTCCCT
GCCATAGCGCTCAGTAGGGAAAAAGGGGTCCCATTTTTTCTCTCGTTTGC
GGCAATGAATAGTGCTTTTTTCCTCGTTTTTTTTTCTTTGTATTTTTGGG
TACTTGAACAACCTGTACAATCACGTTGCGAAGTATCTTCGATAGTTCTT
TGGTGCTGACCGGGACCAAAGTTCCAGAGTGGCAAAAATCAGCAACTTCG
AGGGGCCAAAATGAAGGGAAGGCGTAAAAAAAAAAAAAAAAAAAAGCGTT
TTTCCGAAAAAAAAAGGTGTTTGAACCCAGGATCGAACTCACGGCCACTG
AACAGCTCGCTTTCGCGGTGTATTTTGCCTTACGACCAAACCTTGCTTAT
ATT
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Coding sequence (CDS) from alignment at Scaffold_444:325094..327596-

>EsuBft1686_9a-0001 ID=EsuBft1686_9a-0001|Name=EsuBft1686_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_444:325094..327596- (Ectocarpus subulatus male Bft15b)
ATGGTCGGCGTGATGGATGCTCGTTCGGTGCTCAAAGCGGCACGACTTTT
CGGCTTGTGCAACCTACTCGGACAGAGTGGCGGCGTGTTTGCCGGAAGCC
ATGAACCTGACCACGACCATCGTGGCCTTCAAACCAGCTCAAACATTGTT
TTCATCGAAGCCGTTGTAGGCACGGCATTCACCACTGATGAGGAGAGTGG
GCTGCAGCTCAAGAACGCTGAGCGCGGTGTAGCCGGAAATGCGGCGACAA
CCATCACCACGTCTGCCACAGCCCAGGGGCCACGGTAA
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