EsuBft995_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft995_11a-0001
Unique NameEsuBft995_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:71988..74800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G019
ProteomeIdEsuBft995_11
Protein domainsIPR011989
Protein domainsIPR016024
Protein domainsPTHR10997
Ownerapollo_admin@sb-roscoff.fr
Noteimportin-11 os:homo sapiens gn:ipo11 pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length564
Hectar predicted targeting categoryother localisation
Evalue3.8e-118
EggNOG OGsCOG5657@1|root,KOG1993@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRan GTPase binding
COG categoryD
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0006886
GO0005622
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft995_11aEsuBft995_11aEctocarpus subulatus male Bft15bgeneScaffold_444 71988..74800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_11a-0001EsuBft995_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 71988..74800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_11a-0001-exonagat-exon-15860Ectocarpus subulatus male Bft15bexonScaffold_444 71988..72131 -
EsuBft995_11a-0001-exonagat-exon-15859Ectocarpus subulatus male Bft15bexonScaffold_444 72631..72738 -
EsuBft995_11a-0001-exonagat-exon-15858Ectocarpus subulatus male Bft15bexonScaffold_444 73956..74093 -
EsuBft995_11a-0001-exonEsuBft995_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 74541..74711 -
EsuBft995_11a-0001-exonagat-exon-15861Ectocarpus subulatus male Bft15bexonScaffold_444 74798..74800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_11a-0001-cdsEsuBft995_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 71988..72131 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft995_11a-0001 ID=EsuBft995_11a-0001|Name=EsuBft995_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_444:71988..74800- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACAGAGGCCGACATGGTGATTCGACTGTCAGCCCTCAGCGCGCT
CCGCAGCTTGCTTTCCCTGTGGGATCTCGACCCCGAGCAGTGCCTAGCGC
CGGCACTTGGGTGGCTGGTGCCTGCTTTGTACGCCATGTTCAAAGATGTC
AGGGAAATGGACAATCGTCAGGAGGTTTTGACCGTAATGTCGGAGATGCT
GGAGAGATCGGGACGGCTGCTCGTGCCTCACTGCCAGGCTGCAGTGGCTG
GGCTGCCCGATGTGTGGAGTGCCACCTCGTCTCAGACACCGCTAAGATGC
TCCTGCCTTCAGGTGATGACGCACGTGGTCGACGCGCTGGGAAGAGACAA
GGGGCCAGACCTTGATCGAATAGCCCTGGCGATGGTGGACGTTTCCACCA
AGGTCGGCAGTGATGAAGCGATTTACCTCATGGAGACGGGTCTGGGGCTT
TGGCTGGCGCTGTTGAGACACGCCACGGACTACAGCGAAGGTTTACACAA
CCTCTTCCCGCGAATCCCCGAGATGCTCGACACAGACCTCGACAACCTCA
AGCAGGTGCAATGA
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protein sequence of EsuBft995_11a-0001

>EsuBft995_11 ID=EsuBft995_11|Name=EsuBft995_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MATEADMVIRLSALSALRSLLSLWDLDPEQCLAPALGWLVPALYAMFKDV
REMDNRQEVLTVMSEMLERSGRLLVPHCQAAVAGLPDVWSATSSQTPLRC
SCLQVMTHVVDALGRDKGPDLDRIALAMVDVSTKVGSDEAIYLMETGLGL
WLALLRHATDYSEGLHNLFPRIPEMLDTDLDNLKQVQ
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mRNA from alignment at Scaffold_444:71988..74800-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft995_11a-0001 ID=EsuBft995_11a-0001|Name=EsuBft995_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2813bp|location=Sequence derived from alignment at Scaffold_444:71988..74800- (Ectocarpus subulatus male Bft15b)
ATGGTAATTCTCTCATCATCTTGCCGCAACCGTTCTCTCGGGAGATAATT
TTCTACCCACACCTTCGCCACGGCATCCCTTTGTTACAGGCAACAGAGGC
CGACATGGTGATTCGACTGTCAGCCCTCAGCGCGCTCCGCAGCTTGCTTT
CCCTGTGGGATCTCGACCCCGAGCAGTGCCTAGCGCCGGCACTTGGGTGG
CTGGTGCCTGCTTTGTACGCCATGTTCAAAGATGTCAGGGAAATGGACAA
TCGTCAGGAGGTAAGGTTCAGCTTCAGTTGTCTGTGTCTAACCCATTACA
GCTTTCATGGCAGCGAATGCATGGATGTCTCGAGTATCGATGTCTAGCCC
ATGACCGCTTTCACGGGGGTGTCTAGCCCATGGCTCTTGTGACTGTCTAT
GTCTAGCCTATCTACAACAGGTTTCGTAGCAGTTAATGCTGGGTGTCTTG
AGTGTTTCTTTCTATCCCAAGTACCAGAACAGCTTTCACAGCGGTGAATG
CATGGTTGCCTTGACTGTTTACGTCTATGGCATTTCACAGGAGTGAATAC
ATGGGTGTGAGTTGGCTATGTCTAACCCATGTAACATGGGAGCTTTCACA
GCAGTTAATGCAGTGCTTACATAAAAAATTGCTCAGTTTCGATGAGCCGC
AACTCAGGCCCCGGTCCTCACTGTAATACGCCAAACACGATGCACTCTTC
CACCTAGGTTTTGACCGTAATGTCGGAGATGCTGGAGAGATCGGGACGGC
TGCTCGTGCCTCACTGCCAGGCTGCAGTGGCTGGGCTGCCCGATGTGTGG
AGTGCCACCTCGTCTCAGACACCGCTAAGATGCTCCTGCCTTCAGGTGAT
GTCAACCACCCGTACCATTTAACAACACAACAACAACCTACCGTAGTTGA
CATGACACAAGATACCACACCCCCTGGACCGCCTTGGATAGCTCGATTTC
TTCGCACCATAAAGAGTGTCGGTGCCGAAGTAAGGCGGCGTTGGCACCAT
CTCTTACAGAGCTTTTCGGAAGACGCATCTTTTGATCTGGACACCTTCTC
CTTTGTGGGGAAGTCGAGCTTTGACCATCGGTCCGGGGTGTGCGGTGTCT
GGTGTCATGTCACCTACGGTAGCCCTACCCCTATGCCCTACCTTCACCCT
AAGGATGCCTGACCCCTGCAGTAGTATCGAGGGGTCGAGCACCCTTTCGC
ACGAGCACGTGGTCGCGCCTGTTGCGAATTTCAGCAAGTAATGGTGGAAA
GGGAGCATGGGGGCCCAACGTAAGCCTTCATTTACTTGTGCCACGGTATT
GCCGGCACACCTTGGACATACATACAGTTGCATTGCATCGATCGGCCCGG
GAGAAAAGTAGTGTCCGACGCTAGGCGCTGTGACCAGCGGACAAGCTGGC
CGTGCGGATTGATGCATGTACAACTATTGTGTGCGGGCGTTTCAATTCAT
CAATCAGCGAATCGGTTGTGTCGCAGACAGTACGTTGGAGGCACCCAGTC
CCCGCAGCAGCCTCGTTGGTCGTAAAGAAATCGGACTATGCATATTATCA
TTCCAAAAGGGTTTTGGTGTTCATCGTCACGAATAGTCGTCTGGTGCTTC
AATCCGCTCGTGGATATCGACGTTGGTGTTTGCACTCGCCGAGACTAGAA
GCGTTAGAAGCCTGACGCGCCTCATAAGTCTGATATTTTTTTCTGTGGTG
CTCTTGTGATGTTGCAGCCGTCTTGTAGCAGGTCGCTCTAGCGATAATTT
TTCAAAGCTTTTGAAGTTGTTTTGCCTGGTTGAAAGCGCCTCTAGAGAGG
ATGACGTCCAGTTGCCTCTTTTGCCGATTCTTGTGCTTCATTCACGCGTC
ATTCACGCGAGGTCGACTATGGATGCGGTATGCGACAGGGTACTCGGTGC
CCTTAAAGGACGGCGGTCGGAACTTTGCGGTGTTGTGCTCGTTGTGATTT
CCCTCCGAGATTTCTTTTGATCCCTGGCTACAGAAGAGTTGTGGGTGTGA
GTGAGGTACAGTGTTCATGACTTTCCAGTGCTTTTTCATTGCTGATAACT
GCGCATTTGAAGGTGATGACGCACGTGGTCGACGCGCTGGGAAGAGACAA
GGGGCCAGACCTTGATCGAATAGCCCTGGCGATGGTGGACGTTTCCACCA
AGGTCGGCAGTGATGAAGCGGTGAGTTGCGATGTAGCGCCAATCTAGACT
AATTGTTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCG
TCGTCGTCGTCGTTGTCGTTGTCTTCCCGTTTGTAAACCGCTCCGATTTT
TCAATCTAGAACCTTCTTCTATCCGTACTCATCTAGCACTTGACGCTGAC
GATTTCCGTGGTCATAGGCTGCCATGAACCTGTTGGACAAAGAAATGTAT
GGCCTGTTCGCTGTTAATCCGGACTTTTGTCGAGCGTTCTGGCAGTGCAA
CAATGCGCCTCTGTGGTTGTGGCCATGCTCACTTTTTGGAGGTAGATTAT
GGAGTGCGTGGAGCCGCCATGAGATTCAAACCACCAGGCGCTTTTGCGAC
GGTGGAAAAGCAGTAGGATAAGCATTGTTTATGGCATCGTCTAGTCGTGC
AATGATATAAATTTTTCGTTATTTGTGAAGTCATCCGTGACATCGTCGAA
ACAATCATTGCTCGGTCAGATTTACCTCATGGAGACGGGTCTGGGGCTTT
GGCTGGCGCTGTTGAGACACGCCACGGACTACAGCGAAGGTTTACACAAC
CTCTTCCCGCGAATCCCCGAGATGCTCGACACAGACCTCGACAACCTCAA
GCAGGTGCAATGA
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Coding sequence (CDS) from alignment at Scaffold_444:71988..74800-

>EsuBft995_11a-0001 ID=EsuBft995_11a-0001|Name=EsuBft995_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_444:71988..74800- (Ectocarpus subulatus male Bft15b)
ATGGCAACAGAGGCCGACATGGTGATTCGACTGTCAGCCCTCAGCGCGCT
CCGCAGCTTGCTTTCCCTGTGGGATCTCGACCCCGAGCAGTGCCTAGCGC
CGGCACTTGGGTGGCTGGTGCCTGCTTTGTACGCCATGTTCAAAGATGTC
AGGGAAATGGACAATCGTCAGGAGGTTTTGACCGTAATGTCGGAGATGCT
GGAGAGATCGGGACGGCTGCTCGTGCCTCACTGCCAGGCTGCAGTGGCTG
GGCTGCCCGATGTGTGGAGTGCCACCTCGTCTCAGACACCGCTAAGATGC
TCCTGCCTTCAGGTGATGACGCACGTGGTCGACGCGCTGGGAAGAGACAA
GGGGCCAGACCTTGATCGAATAGCCCTGGCGATGGTGGACGTTTCCACCA
AGGTCGGCAGTGATGAAGCGATTTACCTCATGGAGACGGGTCTGGGGCTT
TGGCTGGCGCTGTTGAGACACGCCACGGACTACAGCGAAGGTTTACACAA
CCTCTTCCCGCGAATCCCCGAGATGCTCGACACAGACCTCGACAACCTCA
AGCAGGTGCAATGA
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