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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra85763 |
| ProteomeId | EsuBft1104_2 |
| Protein domains | Coil |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2220 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.21e-51 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1104_2a-0001 ID=EsuBft1104_2a-0001|Name=EsuBft1104_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2220bp|location=Sequence derived from alignment at Scaffold_440:192481..194943- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTATCCTCTGGAGCCTAACTACGCCAGGTGTTGGTTCAGCGATGACGG
AAAGAAAGAACGAGTTGGAAGGACAAGTGAAGCGGAGGTCGAGATGGCGG
ACCTGCAGAGAAGAGTTGAGGAGGCAGAGGAGAGGAGTTCAGCTGAGGAC
GCTTCTAGAGAGAGGGTGGGTAATGCCGGTTACGCGGCTGGTAACTTTTG
GATGGACGGCGCCGATTATGCGCCTGGGTACCATTACAGGGATGGGGCTG
CCGGGGGGGCGGCTACTTTTGGAGCTGGGGGAGCGGCTCATTTTTTTAGG
ACACATCGCCGCGTTGGCGTCGGGCCCTCGGACGGCAGCAGCCGTGATGG
AGGCGGCGCCGGCGGCAGGGGGTACGGCAGCAGCGGGAGCAGCAGCGTCA
TCCCCGGTCGCCGCTTTGGCGCCGGGCTCTCCGATGGACGCAGCGGCGAT
GGATGCGTCGGTGGCGGCGTCGGCGGCTTCGGCGGCGGGGGGAATGGTAG
CGGCGACAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGCCAGCCACT
CGGGCGGTCGCAGCGGCGGTGGCGACAGCGGCGACGGCGGCGGCGGCAGC
GGTGGCGGTGATGGAGGAGATGGCGACGCCCGTGGCGCGCACACTAGGGC
CCGCGACCGCGATGCTCCCGACAGCAGCTTCGTGATCTACCTCTACCGGA
GCGGCCCCGACCCGCGCCGGCCCCCGCGCGCGCCACACATGCAGACCCAG
GAGCAACGTCATCAGGTCACCCCCTCCGTCACGAGGTCATCGGCGCGGCG
CTTGGCCGCCGCTGGACCTCTGCCGGGATCACCGGGGGTGTTCGCGATGC
TTGCGATGGCGGAAGACTTTGACGCGCGGATGGACGATGAGCGGTGCTTT
GGGGGTCCGGAGCTGCCGGATGGGCCTCCGAGCGAGCGCGTGATCCCGAC
GGCGTGGGCGGAGCACTCAGGCGAAGACAGTGACATCTGTCAGCGGGAAG
GGGTTGACTATTTTGAGACTTTTTCACCGTGCCCGTCTGTTTCTAGTATT
TGCGTTCTTGCCGCAATTGCTTGTTATCTTGGTTGGGATTTCGTGCACCT
TGATGCTGAGCAGGCGTTCGTTCAATCCAAGCTGGAAGACGATGTGCACA
TTCGTTTGCCGCAAGGTTGTGGCTCTCTCGCGGGTAAAGTTGTCAAGCTT
GCCCATAGCCTGTACGGTCCGAAGCAAGCGTCCCGCATGTGGCATTACCA
TTTTCTCCGAGCAATGAAGCGCCTTGGGTTTGAGCAGTGTGCTGCTGATG
CTTGTGTCATGCGTCTGATCGCGAATGGTGTTGTGACAATGGTGGCTGTT
GTGCACGTCGACGACATTTTCTCGATCGGGACCAAGAGCAGGTGTGGTCA
GTTTTGCAGAGACTTGAACGCTTTCGTCCCGATCAAGAACCTTGGGGAGC
TGAGTTTGTACGCGGGTATTCGGCTTTCTCGTGATCGCGCGGGTGGCACG
AGTACGTTGTCGTGGGAGACGTTTGCTAGGAACTTGGTTGAGAAGTTCGG
TGCCACACGCAACAAGGAGACTCCCGTCGCAGTAGGCTTTAAGCTTGAGG
ATTTTGACGATGCACAGCGTGATGTTCTTGAGCCTTTTCAGTCTTTGGTA
AGACACTTGATGTGGCTGGCGAATCAGCCTCGCCCGAACATCCTAAATGC
AGTGCGAGCTGTGGCGAGGTTCACGGTCGATTTTGGTATCACGTATCAGC
GGGGAACGGAGGGTGGTGTCTCGTTGGAGCTCTTCGTTGACTCCGATTAC
TCGAGCAACGCGACGGACCGGCGGTCGGTTTCTGGTGCGGTTGTGATGTG
TGCGGGTGCGTGTGTATCGTTTTTGTCGCGAACGCAGAAGAGCGTTACAA
TTTCTTCGACCGAAGCCGAGTATGTTGCGATGGGCGACGGTTTCAAGGAA
GCGATTTTCTTGCGCTATCTCTGGAGTTTTATCTTTCCGGATGAGCGCAT
CGGGTGCACTAGAGTCAACGAGGATAAGATGGGGGCCCTTCATTTGGCCA
ACAACCCGGTCACCACCCCCTACTCTAAGCACATGAACATGCGACACCAT
TTCATTCGGGAGGGGGTGGCACGCAAGCATTTTAAGGTGGTCCACGTTGC
ATCGGCTTTGCAGCACGCCGACTTTATGACCAAAACCACTGCACAGGGCG
GCATTCTGCTTTCACCGTGA back to topprotein sequence of EsuBft1104_2a-0001 >EsuBft1104_2 ID=EsuBft1104_2|Name=EsuBft1104_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=739bp
MYPLEPNYARCWFSDDGKKERVGRTSEAEVEMADLQRRVEEAEERSSAED
ASRERVGNAGYAAGNFWMDGADYAPGYHYRDGAAGGAATFGAGGAAHFFR
THRRVGVGPSDGSSRDGGGAGGRGYGSSGSSSVIPGRRFGAGLSDGRSGD
GCVGGGVGGFGGGGNGSGDSSSGVPGRRVGASHSGGRSGGGDSGDGGGGS
GGGDGGDGDARGAHTRARDRDAPDSSFVIYLYRSGPDPRRPPRAPHMQTQ
EQRHQVTPSVTRSSARRLAAAGPLPGSPGVFAMLAMAEDFDARMDDERCF
GGPELPDGPPSERVIPTAWAEHSGEDSDICQREGVDYFETFSPCPSVSSI
CVLAAIACYLGWDFVHLDAEQAFVQSKLEDDVHIRLPQGCGSLAGKVVKL
AHSLYGPKQASRMWHYHFLRAMKRLGFEQCAADACVMRLIANGVVTMVAV
VHVDDIFSIGTKSRCGQFCRDLNAFVPIKNLGELSLYAGIRLSRDRAGGT
STLSWETFARNLVEKFGATRNKETPVAVGFKLEDFDDAQRDVLEPFQSLV
RHLMWLANQPRPNILNAVRAVARFTVDFGITYQRGTEGGVSLELFVDSDY
SSNATDRRSVSGAVVMCAGACVSFLSRTQKSVTISSTEAEYVAMGDGFKE
AIFLRYLWSFIFPDERIGCTRVNEDKMGALHLANNPVTTPYSKHMNMRHH
FIREGVARKHFKVVHVASALQHADFMTKTTAQGGILLSP back to topmRNA from alignment at Scaffold_440:192481..194943- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1104_2a-0001 ID=EsuBft1104_2a-0001|Name=EsuBft1104_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2463bp|location=Sequence derived from alignment at Scaffold_440:192481..194943- (Ectocarpus subulatus male Bft15b)
ATGTATCCTCTGGAGCCTAACTACGCCAGGTGTTGGTTCAGCGATGACGG
AAAGAAAGAACGAGTTGGAAGGACAAGTGAAGCGGAGGTCGAGATGGCGG
ACCTGCAGAGAAGAGTTGAGGAGGCAGAGGAGAGGAGTTCAGCTGAGGAC
GCTTCTAGAGAGAGGGTGGGTAATGCCGGTTACGCGGCTGGTAACTTTTG
GATGGACGGCGCCGATTATGCGCCTGGGTACCATTACAGGGATGGGGCTG
CCGGGGGGGCGGCTACTTTTGGAGCTGGGGGAGCGGCTCATTTTTTTAGG
ACACATCGCCGCGTTGGCGTCGGGCCCTCGGACGGCAGCAGCCGTGATGG
AGGCGGCGCCGGCGGCAGGGGGTACGGCAGCAGCGGGAGCAGCAGCGTCA
TCCCCGGTCGCCGCTTTGGCGCCGGGCTCTCCGATGGACGCAGCGGCGAT
GGATGCGTCGGTGGCGGCGTCGGCGGCTTCGGCGGCGGGGGGAATGGTAG
CGGCGACAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGCCAGCCACT
CGGGCGGTCGCAGCGGCGGTGGCGACAGCGGCGACGGCGGCGGCGGCAGC
GGTGGCGGTGATGGAGGAGATGGCGACGCCCGTGGCGCGCACACTAGGGC
CCGCGACCGCGATGCTCCCGACAGCAGCTTCGTGATCTACCTCTACCGGA
GCGGCCCCGACCCGCGCCGGCCCCCGCGCGCGCCACACATGCAGACCCAG
GAGCAACGTCATCAGGTCACCCCCTCCGTCACGAGGTCATCGGCGCGGCG
CTTGGCCGCCGCTGGACCTCTGCCGGGATCACCGGGGGTGTTCGCGATGC
TTGCGATGGCGGAAGACTTTGACGCGCGGATGGACGATGAGCGGTGCTTT
GGGGGTCCGGAGCTGCCGGATGGGCCTCCGAGCGAGCGCGTGATCCCGAC
GGCGTGGGCGGAGCACTCAGGCGAAGACAGTGACATCTGGTACAGCGCTG
AGCACGCGGAGTTCACCGGACTTCTCGAGGCGGAGACTTTTTCGCCGGCG
GCGGGCTTGTAGTAGCCAGGGACGAACATCATTTCTGCCAAATGAGTGTA
CCTTTTGAAGTCCAACGAGTTCGGTGATGTGACGCGTGCCAAGGCCAGAC
TGGAAGCAAGGGGTGTTAGTCAGCGGGAAGGGGTTGACTATTTTGAGACT
TTTTCACCGTGCCCGTCTGTTTCTAGTATTTGCGTTCTTGCCGCAATTGC
TTGTTATCTTGGTTGGGATTTCGTGCACCTTGATGCTGAGCAGGCGTTCG
TTCAATCCAAGCTGGAAGACGATGTGCACATTCGTTTGCCGCAAGGTTGT
GGCTCTCTCGCGGGTAAAGTTGTCAAGCTTGCCCATAGCCTGTACGGTCC
GAAGCAAGCGTCCCGCATGTGGCATTACCATTTTCTCCGAGCAATGAAGC
GCCTTGGGTTTGAGCAGTGTGCTGCTGATGCTTGTGTCATGCGTCTGATC
GCGAATGGTGTTGTGACAATGGTGGCTGTTGTGCACGTCGACGACATTTT
CTCGATCGGGACCAAGAGCAGGTGTGGTCAGTTTTGCAGAGACTTGAACG
CTTTCGTCCCGATCAAGAACCTTGGGGAGCTGAGTTTGTACGCGGGTATT
CGGCTTTCTCGTGATCGCGCGGGTGGCACGAGTACGTTGTCGTGGGAGAC
GTTTGCTAGGAACTTGGTTGAGAAGTTCGGTGCCACACGCAACAAGGAGA
CTCCCGTCGCAGTAGGCTTTAAGCTTGAGGATTTTGACGATGCACAGCGT
GATGTTCTTGAGCCTTTTCAGTCTTTGGTAAGACACTTGATGTGGCTGGC
GAATCAGCCTCGCCCGAACATCCTAAATGCAGTGCGAGCTGTGGCGAGGT
ATGCCCACGCCCCCAAGATGGTGCATTGACGTGCAGCTTTGCATGTTTTG
ATGTATGTCAGGTTCACGGTCGATTTTGGTATCACGTATCAGCGGGGAAC
GGAGGGTGGTGTCTCGTTGGAGCTCTTCGTTGACTCCGATTACTCGAGCA
ACGCGACGGACCGGCGGTCGGTTTCTGGTGCGGTTGTGATGTGTGCGGGT
GCGTGTGTATCGTTTTTGTCGCGAACGCAGAAGAGCGTTACAATTTCTTC
GACCGAAGCCGAGTATGTTGCGATGGGCGACGGTTTCAAGGAAGCGATTT
TCTTGCGCTATCTCTGGAGTTTTATCTTTCCGGATGAGCGCATCGGGTGC
ACTAGAGTCAACGAGGATAAGATGGGGGCCCTTCATTTGGCCAACAACCC
GGTCACCACCCCCTACTCTAAGCACATGAACATGCGACACCATTTCATTC
GGGAGGGGGTGGCACGCAAGCATTTTAAGGTGGTCCACGTTGCATCGGCT
TTGCAGCACGCCGACTTTATGACCAAAACCACTGCACAGGGCGGCATTCT
GCTTTCACCGTGA back to topCoding sequence (CDS) from alignment at Scaffold_440:192481..194943- >EsuBft1104_2a-0001 ID=EsuBft1104_2a-0001|Name=EsuBft1104_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2220bp|location=Sequence derived from alignment at Scaffold_440:192481..194943- (Ectocarpus subulatus male Bft15b)
ATGTATCCTCTGGAGCCTAACTACGCCAGGTGTTGGTTCAGCGATGACGG
AAAGAAAGAACGAGTTGGAAGGACAAGTGAAGCGGAGGTCGAGATGGCGG
ACCTGCAGAGAAGAGTTGAGGAGGCAGAGGAGAGGAGTTCAGCTGAGGAC
GCTTCTAGAGAGAGGGTGGGTAATGCCGGTTACGCGGCTGGTAACTTTTG
GATGGACGGCGCCGATTATGCGCCTGGGTACCATTACAGGGATGGGGCTG
CCGGGGGGGCGGCTACTTTTGGAGCTGGGGGAGCGGCTCATTTTTTTAGG
ACACATCGCCGCGTTGGCGTCGGGCCCTCGGACGGCAGCAGCCGTGATGG
AGGCGGCGCCGGCGGCAGGGGGTACGGCAGCAGCGGGAGCAGCAGCGTCA
TCCCCGGTCGCCGCTTTGGCGCCGGGCTCTCCGATGGACGCAGCGGCGAT
GGATGCGTCGGTGGCGGCGTCGGCGGCTTCGGCGGCGGGGGGAATGGTAG
CGGCGACAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGCCAGCCACT
CGGGCGGTCGCAGCGGCGGTGGCGACAGCGGCGACGGCGGCGGCGGCAGC
GGTGGCGGTGATGGAGGAGATGGCGACGCCCGTGGCGCGCACACTAGGGC
CCGCGACCGCGATGCTCCCGACAGCAGCTTCGTGATCTACCTCTACCGGA
GCGGCCCCGACCCGCGCCGGCCCCCGCGCGCGCCACACATGCAGACCCAG
GAGCAACGTCATCAGGTCACCCCCTCCGTCACGAGGTCATCGGCGCGGCG
CTTGGCCGCCGCTGGACCTCTGCCGGGATCACCGGGGGTGTTCGCGATGC
TTGCGATGGCGGAAGACTTTGACGCGCGGATGGACGATGAGCGGTGCTTT
GGGGGTCCGGAGCTGCCGGATGGGCCTCCGAGCGAGCGCGTGATCCCGAC
GGCGTGGGCGGAGCACTCAGGCGAAGACAGTGACATCTGTCAGCGGGAAG
GGGTTGACTATTTTGAGACTTTTTCACCGTGCCCGTCTGTTTCTAGTATT
TGCGTTCTTGCCGCAATTGCTTGTTATCTTGGTTGGGATTTCGTGCACCT
TGATGCTGAGCAGGCGTTCGTTCAATCCAAGCTGGAAGACGATGTGCACA
TTCGTTTGCCGCAAGGTTGTGGCTCTCTCGCGGGTAAAGTTGTCAAGCTT
GCCCATAGCCTGTACGGTCCGAAGCAAGCGTCCCGCATGTGGCATTACCA
TTTTCTCCGAGCAATGAAGCGCCTTGGGTTTGAGCAGTGTGCTGCTGATG
CTTGTGTCATGCGTCTGATCGCGAATGGTGTTGTGACAATGGTGGCTGTT
GTGCACGTCGACGACATTTTCTCGATCGGGACCAAGAGCAGGTGTGGTCA
GTTTTGCAGAGACTTGAACGCTTTCGTCCCGATCAAGAACCTTGGGGAGC
TGAGTTTGTACGCGGGTATTCGGCTTTCTCGTGATCGCGCGGGTGGCACG
AGTACGTTGTCGTGGGAGACGTTTGCTAGGAACTTGGTTGAGAAGTTCGG
TGCCACACGCAACAAGGAGACTCCCGTCGCAGTAGGCTTTAAGCTTGAGG
ATTTTGACGATGCACAGCGTGATGTTCTTGAGCCTTTTCAGTCTTTGGTA
AGACACTTGATGTGGCTGGCGAATCAGCCTCGCCCGAACATCCTAAATGC
AGTGCGAGCTGTGGCGAGGTTCACGGTCGATTTTGGTATCACGTATCAGC
GGGGAACGGAGGGTGGTGTCTCGTTGGAGCTCTTCGTTGACTCCGATTAC
TCGAGCAACGCGACGGACCGGCGGTCGGTTTCTGGTGCGGTTGTGATGTG
TGCGGGTGCGTGTGTATCGTTTTTGTCGCGAACGCAGAAGAGCGTTACAA
TTTCTTCGACCGAAGCCGAGTATGTTGCGATGGGCGACGGTTTCAAGGAA
GCGATTTTCTTGCGCTATCTCTGGAGTTTTATCTTTCCGGATGAGCGCAT
CGGGTGCACTAGAGTCAACGAGGATAAGATGGGGGCCCTTCATTTGGCCA
ACAACCCGGTCACCACCCCCTACTCTAAGCACATGAACATGCGACACCAT
TTCATTCGGGAGGGGGTGGCACGCAAGCATTTTAAGGTGGTCCACGTTGC
ATCGGCTTTGCAGCACGCCGACTTTATGACCAAAACCACTGCACAGGGCG
GCATTCTGCTTTCACCGTGA back to top
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