EsuBft110_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft110_20a-0001
Unique NameEsuBft110_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_430contigScaffold_430:272115..276121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog251221.35212229
ProteomeIdEsuBft110_20
Protein domainsIPR021503
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl1117|Cyanobacteria
Length183
Hectar predicted targeting categorysignal peptide
Evalue4.91e-07
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G70P@1117|Cyanobacteria
Ec32 ortholog descriptionProtein of unknown function DUF3110
Ec32 orthologEc-14_002010.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionAlternative locus ID
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft110_20aEsuBft110_20aEctocarpus subulatus male Bft15bgeneScaffold_430 272115..276121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_20a-0001EsuBft110_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_430 272197..275172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_20a-0001-exonEsuBft110_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_430 272115..272248 +
EsuBft110_20a-0001-exonagat-exon-11018Ectocarpus subulatus male Bft15bexonScaffold_430 273211..273330 +
EsuBft110_20a-0001-exonagat-exon-11015Ectocarpus subulatus male Bft15bexonScaffold_430 273768..273943 +
EsuBft110_20a-0001-exonagat-exon-11016Ectocarpus subulatus male Bft15bexonScaffold_430 274219..274440 +
EsuBft110_20a-0001-exonagat-exon-11017Ectocarpus subulatus male Bft15bexonScaffold_430 274942..276121 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_20a-0001-exonagat-five_prime_utr-658Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_430 272115..272196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_20a-0001-cdsEsuBft110_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_430 272197..272248 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_20a-0001-exonagat-three_prime_utr-1038Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_430 275173..276121 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft110_20a-0001 ID=EsuBft110_20a-0001|Name=EsuBft110_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1832bp|location=Sequence derived from alignment at Scaffold_430:272115..276121+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACACACCCTGTGATATCGCGGGCCAGGTCTTGGGCGTAGCAAACCCATA
CGGCACTCACTCCCGCGTCTCTTGTGTACAAAATGCGTTGCGTATGCGGC
ATTGCCCTCCTCGTCATGATCACCAGAGCCGAAGCTTTCGTCACGCCCTC
GGCGTTTAGACTGTCTGCCGCTGTCGCCCCAAGTACAAGACTGCTGTACT
CAGGGCAACAGGGCCGGCGAGTTGTCACTATGGCGGCAGAGGGGCTTCCC
CCAGGCGACCACAACATCGATCCCCTCGACGCCCAGTCCAGCATCCCAGA
CAGCGTGGGTTCTGCCGCTATCAGACGGCAAATCGACTCTATCAAGAGAA
GCAGAGGGGCGGGCAAGAGAACACCCAGACAAGGCGAAAGCATCCGCTGG
GTGGCGTCCACAGAATCGGAACACCGCGCGCGCCCCACCCTACTACCGCG
CGCGGTTTGGGTCCTTCTTTTCAGTCAAGGCTCTGGGTCCTTTGGCAGCA
GCAGCGAGCCACAGCGAGGACTGTATTGCTTGTGGTCCAAGGGCACCAAC
TCTGCGTTGGCCTTTGAAGAGCGGGAAGGGGCGCTGCGCTACGCCTTCAA
GCTGAAGGAGAAAGGACTGGGAATCCCGACACCGACGCGCGTCTCAATGA
CGGACCTCCAACGCTTCTGCCTGGACCACAGCTTCGGCATCCGGATGATC
CCCGCCGACGTCGTGCCCGAAGCCCCCCGAAAGACTAAGAAGGATCTGGG
CTTCGACCCTTTGAACTTGACGTCATCACCTCACGGACGACGCGACGCAG
GGGAGGACGCTGGACCCGTGCTGACGCCGGATGACATCCGTAAGTGGCGG
GCTAAATTCGAGCGGCTGTACGCTCAGGAATAGGCAAAGGTAAAACCGAC
TGACTGGCAGAGTGGATCGAGATCCCGGCTGCGCTACTGTCAGAAAGACT
TGAGCCTGTTCGTTTTCTTAGAAAATCACTCGACAGCGTAGAGAGCGAGC
GACCGCGAGAGACTCCCGCGCATGGAGAAGAACGCGGTCAACCCACCGGC
GGCTGTGTGTAGCCTCCTTTCTTCGCTGCTGTTGCGTGTGCTGCAACAGA
TGTAGACGTTTGAGAGACCCACTGCTGCCGGATTGTTGTGGGGGGAGACT
CAGCGTAAAGGCCGCGAATCAAGACGTCTGTCGCCGCTGGTTGGCTAGCG
GTACGCAAGAGTACCTACCCGTGGCGCTAATGTAGTATCGTGAATCATGT
GCAGGGGTACAGGAGGCGGTGTTTTTCAACGAACGCGCGGCAAGAGAACA
ACGTAGTACGTACGTACGCTGCCGAACCACAAGGAAGGGTGGATGGATGC
AATGAATGATAATGTAGCGAGCTGGAGGAGAGAGAGAGCACTTTGACGGC
GTCTGTCTCTGTAGCAGCACGAGGGGAAAAGGACTCGTGTTGTTAGTGGA
GGTTGGGCAAGGGCGTTGTGCCTCGATCGTCAGATGGCTTACGATGGCTT
ACGATGGCTTACGATGAAGTTGTTTTTTTTGTGAATACGTTCATGTCATC
TGCGCTCTGTTGTCTGTAGTATTTAGACTATTCCCGAGGGAGTTTTAGGT
GCTGTGATATATGCATGGACTAGACTGGTTTTGTTCTCTTCTCGCGGTGT
TGAAGTTACGGGTGATGGTTTCCTGCAGAACCCAACCCTCGCTGGTTGAC
TGCTTGTTTTCGTTCACGCCTGGCTCTTGCCAACCGCGCGTTTCTTCGCT
GTTGGTTGTTGTAGCGGTGGACGCTGCTGCTGTTGCCTTGAGTTTAGTTT
TAACTTTGGGAAGGCGACGAAAGCACCCGCGT
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protein sequence of EsuBft110_20a-0001

>EsuBft110_20 ID=EsuBft110_20|Name=EsuBft110_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MRCVCGIALLVMITRAEAFVTPSAFRLSAAVAPSTRLLYSGQQGRRVVTM
AAEGLPPGDHNIDPLDAQSSIPDSVGSAAIRRQIDSIKRSRGAGKRTPRQ
GESIRWVASTESEHRARPTLLPRAVWVLLFSQGSGSFGSSSEPQRGLYCL
WSKGTNSALAFEEREGALRYAFKLKEKGLGIPTPTRVSMTDLQRFCLDHS
FGIRMIPADVVPEAPRKTKKDLGFDPLNLTSSPHGRRDAGEDAGPVLTPD
DIRKWRAKFERLYAQE
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mRNA from alignment at Scaffold_430:272115..276121+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft110_20a-0001 ID=EsuBft110_20a-0001|Name=EsuBft110_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4007bp|location=Sequence derived from alignment at Scaffold_430:272115..276121+ (Ectocarpus subulatus male Bft15b)
CACACACCCTGTGATATCGCGGGCCAGGTCTTGGGCGTAGCAAACCCATA
CGGCACTCACTCCCGCGTCTCTTGTGTACAAAATGCGTTGCGTATGCGGC
ATTGCCCTCCTCGTCATGATCACCAGAGCCGAAGGTAAGGAATAAACAAC
CGTTGAGATACATTGCCGCAGGAGGGGGTCCAACCCCCCCCTCCTATGTG
ACCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGATAGGGGCCAGAGGG
GCAGACGACAGAGTCCAATGATGGGAGAAAACAAACAAACAAACAAACAA
ACAAATTGCAACAAAACCCGCTCTTTTTCAAAAACGGCGGCTCGCTACCC
AGACTAACAGCTCCGGAGGGGTACCAGCACCGCTGGAAAGCAGAAAGTAA
TCAGGGCCAAATCTTGCCAGCAGGTCTGTCGTGTGCTTGTTCTGTACATG
TAGACGCCGGAGCACCCCAGTCCATCTGTGCGATCGATCATGAATCGCCC
CTCTGTTGGCAACAACGGGATTCTCATGTTGAAGATGGTGGCGTGGCGTT
GTGGCACCCACCGCATGTGAATATCTAAAAGATCTACGGGCCTCGAGGGA
AGCGACGAGATGGCCGCCCCCGTGTGTCTGGATTGCCCTAGACCAATGGA
TGGTGTCCTGTTGTATGGTTGTTGTGCTTAAGCTGTGTGTGAATGCGTCT
CGCTCCCTCCGGTCTGGATGGATTGACTGATTCTTTCCACTGAACAACAA
TCTTCACACCTCGGTAAACTTCTCTCTCATCCCTGTACACCCACCGGCTG
TACATCGGGCTAAATACTGAAAATCTAGAGATTGTACCAGGAAGGACTCA
CAGGGAGATTCCCGTCAAGCATTGCGTTCGACCAAGTCGTTGGCACTCCT
CGATGAATGAACGCATTTTTCTGCCTACAACAGCAATCTGCAAGTAGGTG
TTGTTTGTTAGGTCACACACGCGTTCCGGTATCTATCCGCAGACCGCGCG
CGGATAGGAATCCCGCAAAGGTGTGCCTGCATGTGTTGCCGCCCACCACC
GTCACCTCTGCCGGCCGAAACATGCGCGTGCTGCACCCCACATCAGCTTT
CGTCACGCCCTCGGCGTTTAGACTGTCTGCCGCTGTCGCCCCAAGTACAA
GACTGCTGTACTCAGGGCAACAGGGCCGGCGAGTTGTCACTATGGCGGCA
GAGGGGCTTCCCCCAGGTTTGTCTAGTATTTTAAAAATATAGATGGGACA
AACACCACCTCGCTCTGTTCTCGTTTTTGCCGAGGACCCCATGCAGCGAT
TCCGCTCATTAGCTCTTCCTGCTACCAAGCCGTTGTGATCTGCTTGGAAA
AGCTCCTGCTGTGTTCGTCCGTAGACGCGACCGCACGTTGTAGCTGGTGA
TGGTGCGGGAAGATTGATATGTGCAAATACCTGATGTACATCGTCTCCAA
AAACTGATGTGTGGGTTACACACCCTGTTGCACCCGATCGATGCGCAAGG
AATTCTGCACACACGCATGATAAGGAAAAATAGGGTACTACAGTACAGTA
GTGCGCAAAACACTCGGCATGTCCACTTTTCAATGCGACTACCACAACAC
ATGCACCCCCTGGTCCATACCTCCTCATCACCTCATCATCGCCATCACCT
TAGGCGACCACAACATCGATCCCCTCGACGCCCAGTCCAGCATCCCAGAC
AGCGTGGGTTCTGCCGCTATCAGACGGCAAATCGACTCTATCAAGAGAAG
CAGAGGGGCGGGCAAGAGAACACCCAGACAAGGCGAAAGCATCCGCTGGG
TGGCGTCCACAGAATCGGAACACCGCGCGGTACGTTCGTGTGTACTTGCA
AGATAGTCGATGGTAATCTAGGAATTACCAGCACCGCGTACTGAGACGCA
CCAGCGCTCGCCCGCGCGTGCGCGCAGCAACATCCAACACAAGCCGTCCG
TGCGGGCACGATAACGTACTTTGGATCCGCAGGAGACAACACAATAACGA
TGATCCGATGATGTATGTATGTAGTCAACAAGCCTCTGAAGTACGAAAAA
ATATATAACCGACGCTCCCCCCGCCCCTTTGAACCACCTGCCCTCCCGAA
TCAGCGCCCCACCCTACTACCGCGCGCGGTTTGGGTCCTTCTTTTCAGTC
AAGGCTCTGGGTCCTTTGGCAGCAGCAGCGAGCCACAGCGAGGACTGTAT
TGCTTGTGGTCCAAGGGCACCAACTCTGCGTTGGCCTTTGAAGAGCGGGA
AGGGGCGCTGCGCTACGCCTTCAAGCTGAAGGAGAAAGGACTGGGAATCC
CGACACCGACGCGCGTCTCAATGACGGTGGGTAGGCGTATCATGCGCGGC
ACAAAATACATGTGTGTTTTGTTGGCATGGGTTACGGATGGATGGGCTTG
TTCACTTGTCTGGCTTTTTCGTTTTTGAGTCGTGCGGAAACGACAATGTG
GGGGCTGCGGACAGAGTCAAGTCGGATGAAAACCGTCCGCGATCTTGGCT
CGTCCTACGTGTATGCAAAACCAGGCAGGAACATGGTATGACGGGGTGGG
GGGCAGTGCACAATTTTTTTTTTGGTTGATGACCCAAATCAAACACACCT
TCTTTTCACGTTTTCAACAGGAACGATGGAAAACGTGTTGAAAGCGCACT
GAACCGAGGTCACCGCCACTAATATCTTAACTGTCGACCCCCCTTGTTTA
TTTTCTCCCCCACACCAGTTTTTTCTTAGTGGCTCTTTTGATCCTCTCTC
TCTCCCTGCGAATGACAAAGTAACCTTTGGTACCATATCTGCCTCACTAA
GTATTGGCTTGATCCACGCCTTGGCAGGACCTCCAACGCTTCTGCCTGGA
CCACAGCTTCGGCATCCGGATGATCCCCGCCGACGTCGTGCCCGAAGCCC
CCCGAAAGACTAAGAAGGATCTGGGCTTCGACCCTTTGAACTTGACGTCA
TCACCTCACGGACGACGCGACGCAGGGGAGGACGCTGGACCCGTGCTGAC
GCCGGATGACATCCGTAAGTGGCGGGCTAAATTCGAGCGGCTGTACGCTC
AGGAATAGGCAAAGGTAAAACCGACTGACTGGCAGAGTGGATCGAGATCC
CGGCTGCGCTACTGTCAGAAAGACTTGAGCCTGTTCGTTTTCTTAGAAAA
TCACTCGACAGCGTAGAGAGCGAGCGACCGCGAGAGACTCCCGCGCATGG
AGAAGAACGCGGTCAACCCACCGGCGGCTGTGTGTAGCCTCCTTTCTTCG
CTGCTGTTGCGTGTGCTGCAACAGATGTAGACGTTTGAGAGACCCACTGC
TGCCGGATTGTTGTGGGGGGAGACTCAGCGTAAAGGCCGCGAATCAAGAC
GTCTGTCGCCGCTGGTTGGCTAGCGGTACGCAAGAGTACCTACCCGTGGC
GCTAATGTAGTATCGTGAATCATGTGCAGGGGTACAGGAGGCGGTGTTTT
TCAACGAACGCGCGGCAAGAGAACAACGTAGTACGTACGTACGCTGCCGA
ACCACAAGGAAGGGTGGATGGATGCAATGAATGATAATGTAGCGAGCTGG
AGGAGAGAGAGAGCACTTTGACGGCGTCTGTCTCTGTAGCAGCACGAGGG
GAAAAGGACTCGTGTTGTTAGTGGAGGTTGGGCAAGGGCGTTGTGCCTCG
ATCGTCAGATGGCTTACGATGGCTTACGATGGCTTACGATGAAGTTGTTT
TTTTTGTGAATACGTTCATGTCATCTGCGCTCTGTTGTCTGTAGTATTTA
GACTATTCCCGAGGGAGTTTTAGGTGCTGTGATATATGCATGGACTAGAC
TGGTTTTGTTCTCTTCTCGCGGTGTTGAAGTTACGGGTGATGGTTTCCTG
CAGAACCCAACCCTCGCTGGTTGACTGCTTGTTTTCGTTCACGCCTGGCT
CTTGCCAACCGCGCGTTTCTTCGCTGTTGGTTGTTGTAGCGGTGGACGCT
GCTGCTGTTGCCTTGAGTTTAGTTTTAACTTTGGGAAGGCGACGAAAGCA
CCCGCGT
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Coding sequence (CDS) from alignment at Scaffold_430:272115..276121+

>EsuBft110_20a-0001 ID=EsuBft110_20a-0001|Name=EsuBft110_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_430:272115..276121+ (Ectocarpus subulatus male Bft15b)
ATGCGTTGCGTATGCGGCATTGCCCTCCTCGTCATGATCACCAGAGCCGA
AGCTTTCGTCACGCCCTCGGCGTTTAGACTGTCTGCCGCTGTCGCCCCAA
GTACAAGACTGCTGTACTCAGGGCAACAGGGCCGGCGAGTTGTCACTATG
GCGGCAGAGGGGCTTCCCCCAGGCGACCACAACATCGATCCCCTCGACGC
CCAGTCCAGCATCCCAGACAGCGTGGGTTCTGCCGCTATCAGACGGCAAA
TCGACTCTATCAAGAGAAGCAGAGGGGCGGGCAAGAGAACACCCAGACAA
GGCGAAAGCATCCGCTGGGTGGCGTCCACAGAATCGGAACACCGCGCGCG
CCCCACCCTACTACCGCGCGCGGTTTGGGTCCTTCTTTTCAGTCAAGGCT
CTGGGTCCTTTGGCAGCAGCAGCGAGCCACAGCGAGGACTGTATTGCTTG
TGGTCCAAGGGCACCAACTCTGCGTTGGCCTTTGAAGAGCGGGAAGGGGC
GCTGCGCTACGCCTTCAAGCTGAAGGAGAAAGGACTGGGAATCCCGACAC
CGACGCGCGTCTCAATGACGGACCTCCAACGCTTCTGCCTGGACCACAGC
TTCGGCATCCGGATGATCCCCGCCGACGTCGTGCCCGAAGCCCCCCGAAA
GACTAAGAAGGATCTGGGCTTCGACCCTTTGAACTTGACGTCATCACCTC
ACGGACGACGCGACGCAGGGGAGGACGCTGGACCCGTGCTGACGCCGGAT
GACATCCGTAAGTGGCGGGCTAAATTCGAGCGGCTGTACGCTCAGGAATA
G
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