EsuBft1046_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1046_8a-0001
Unique NameEsuBft1046_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_421contigScaffold_421:370503..372024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1046_8
Protein domainsPTHR32134
Protein domainsSSF52058
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon2
Length1083
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_8aEsuBft1046_8aEctocarpus subulatus male Bft15bgeneScaffold_421 370503..372024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_8a-0001-exonagat-exon-44323Ectocarpus subulatus male Bft15bexonScaffold_421 370503..370505 +
EsuBft1046_8a-0001-exonEsuBft1046_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_421 370945..372024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_8a-0001-cdsEsuBft1046_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_421 370503..370505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_8a-0001EsuBft1046_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_421 370503..372024 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1046_8a-0001 ID=EsuBft1046_8a-0001|Name=EsuBft1046_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1083bp|location=Sequence derived from alignment at Scaffold_421:370503..372024+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCTTCGGGTACGAATTCAACCAAAGCATCGCTGAGGTTGTGTG
GCCGGCAGCTCTCCAGAAGTTGTCCTTCGAGCACAACTTTGGTCAGCCCA
TTATTGAAGCCACGTGGCCGGTCTCCCTGAAGCAGCTTTCGTTCGAGATG
GCGTTCAATCAACCCATCGAAGAGGTCGTGTGGCCGGCGTCCCTGCAACA
ACTGTCGCCCAGGTCCAAATTCGACCATCCCATTGCCGAAGTCGTGTGGC
CGGCCTCCCTCCAGCAGCTATTGCTTGGGGGTGGCTTCAATCAACCCATC
GCCCAAGTCGTGTGGCCGGCGCCCCTGCAGCAGCTATCGTGTGGAGATTG
TTTAGACCAGCCTCTTGACGAAGTCGTGTGGCCGGCCTTCATGCAGCAGC
TATCGTTTGGACATCTTTTCGACCACCCTCTTGACGAAGTCGTGTGGCCG
GCCTCCCTGCAGCAGCTGTCGTTTGGAGATTGTTTCGACCACCCTCTTGA
AGTCGTGTGGCCTGCCTCCCTGCAGCAGCTGTCGTTTGGAGATTGTTTCA
ACCAGCCTCTTGACGAAGTCGTGTGGCCTGCCTACCAGCCGCTATCGTTT
GGAGCTTGTTTCAACCAGCCTCTTGACGAAGTCGTGTGGCCGGCCTCACT
GCAGCAGCTATCGTTTGGAGATTGTTTCAACCGGCCTCTTGACGAAGTCG
TGTGGTCGGCCTTCCTGCGGCAGCTATCGCTAGGAGATGGTTTCAATCAG
CCTCTTGACGAAGTCGTGTGGTCGGCCTCCCTGCAGCAGCTGTCGCTTGG
CGATTGCTTCAACCAGCCTCTTGACGAACACGTGTGGCCGGCCTTCCTGC
GGCAGCTATCGTTCGGGGATCGTTTCAACCAGCCTCTTTACGTAGTCGTG
TGGCCGGCCTCCTTGCAGCAGCTATCGTTCGGATTCGAATTCAACCAGCC
CATCGCCAACGTCGTGTGGCCGGCCTTCGTGCAGCAGCTTTCGCTCGGGA
ATGAATTCAACCAGCCCGTCGCCCAAGTTGTGTGGCCGGCTTCCTTAAAA
AGTGTAACTCGCGACGGGGTTAGTCTGCTATGA
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protein sequence of EsuBft1046_8a-0001

>EsuBft1046_8 ID=EsuBft1046_8|Name=EsuBft1046_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=360bp
MLSFGYEFNQSIAEVVWPAALQKLSFEHNFGQPIIEATWPVSLKQLSFEM
AFNQPIEEVVWPASLQQLSPRSKFDHPIAEVVWPASLQQLLLGGGFNQPI
AQVVWPAPLQQLSCGDCLDQPLDEVVWPAFMQQLSFGHLFDHPLDEVVWP
ASLQQLSFGDCFDHPLEVVWPASLQQLSFGDCFNQPLDEVVWPAYQPLSF
GACFNQPLDEVVWPASLQQLSFGDCFNRPLDEVVWSAFLRQLSLGDGFNQ
PLDEVVWSASLQQLSLGDCFNQPLDEHVWPAFLRQLSFGDRFNQPLYVVV
WPASLQQLSFGFEFNQPIANVVWPAFVQQLSLGNEFNQPVAQVVWPASLK
SVTRDGVSLL
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mRNA from alignment at Scaffold_421:370503..372024+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1046_8a-0001 ID=EsuBft1046_8a-0001|Name=EsuBft1046_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1522bp|location=Sequence derived from alignment at Scaffold_421:370503..372024+ (Ectocarpus subulatus male Bft15b)
ATGGTGAGTCGCGTGCCGGCTGTGCAGGCTTTTGGTTCAACATGGGGACT
TCCGACGGAGGTTCTGCTGCAGAGTTCTGCCATCGAGCTTGGGTCTGGAT
CAGCATATCATCGCATGAATGGACATTCATCTGCAGCAAGCCTAGGATCG
ATGTTTTGGCTCAAAAAGCTCAATTGGCTAGTGTTGGAGTTGGATACGCC
AGTGAACAAGACCTCTTCGTGGCCGGCCTCCCTGCAGCATCCATCGCTTG
GAGATAGTGTCAACCAGCCCATCGCTCAAGTCGCGTGGCCGGCCTCCCTG
CAGCATCTATCGGTTGGAGATAGTTTCAACCAGCCCATCGCTGAGGTTGT
GTGGCCGGCCTCCCTTCGACAGCTATCGTTTGCATGGCGCTCCAACCAAC
CCATCGCCAACTCCGAGTGGCCGGCCTCCTTGCAGCAGCTAGCTGTCCTT
CGGGTACGAATTCAACCAAAGCATCGCTGAGGTTGTGTGGCCGGCAGCTC
TCCAGAAGTTGTCCTTCGAGCACAACTTTGGTCAGCCCATTATTGAAGCC
ACGTGGCCGGTCTCCCTGAAGCAGCTTTCGTTCGAGATGGCGTTCAATCA
ACCCATCGAAGAGGTCGTGTGGCCGGCGTCCCTGCAACAACTGTCGCCCA
GGTCCAAATTCGACCATCCCATTGCCGAAGTCGTGTGGCCGGCCTCCCTC
CAGCAGCTATTGCTTGGGGGTGGCTTCAATCAACCCATCGCCCAAGTCGT
GTGGCCGGCGCCCCTGCAGCAGCTATCGTGTGGAGATTGTTTAGACCAGC
CTCTTGACGAAGTCGTGTGGCCGGCCTTCATGCAGCAGCTATCGTTTGGA
CATCTTTTCGACCACCCTCTTGACGAAGTCGTGTGGCCGGCCTCCCTGCA
GCAGCTGTCGTTTGGAGATTGTTTCGACCACCCTCTTGAAGTCGTGTGGC
CTGCCTCCCTGCAGCAGCTGTCGTTTGGAGATTGTTTCAACCAGCCTCTT
GACGAAGTCGTGTGGCCTGCCTACCAGCCGCTATCGTTTGGAGCTTGTTT
CAACCAGCCTCTTGACGAAGTCGTGTGGCCGGCCTCACTGCAGCAGCTAT
CGTTTGGAGATTGTTTCAACCGGCCTCTTGACGAAGTCGTGTGGTCGGCC
TTCCTGCGGCAGCTATCGCTAGGAGATGGTTTCAATCAGCCTCTTGACGA
AGTCGTGTGGTCGGCCTCCCTGCAGCAGCTGTCGCTTGGCGATTGCTTCA
ACCAGCCTCTTGACGAACACGTGTGGCCGGCCTTCCTGCGGCAGCTATCG
TTCGGGGATCGTTTCAACCAGCCTCTTTACGTAGTCGTGTGGCCGGCCTC
CTTGCAGCAGCTATCGTTCGGATTCGAATTCAACCAGCCCATCGCCAACG
TCGTGTGGCCGGCCTTCGTGCAGCAGCTTTCGCTCGGGAATGAATTCAAC
CAGCCCGTCGCCCAAGTTGTGTGGCCGGCTTCCTTAAAAAGTGTAACTCG
CGACGGGGTTAGTCTGCTATGA
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Coding sequence (CDS) from alignment at Scaffold_421:370503..372024+

>EsuBft1046_8a-0001 ID=EsuBft1046_8a-0001|Name=EsuBft1046_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1083bp|location=Sequence derived from alignment at Scaffold_421:370503..372024+ (Ectocarpus subulatus male Bft15b)
ATGCTGTCCTTCGGGTACGAATTCAACCAAAGCATCGCTGAGGTTGTGTG
GCCGGCAGCTCTCCAGAAGTTGTCCTTCGAGCACAACTTTGGTCAGCCCA
TTATTGAAGCCACGTGGCCGGTCTCCCTGAAGCAGCTTTCGTTCGAGATG
GCGTTCAATCAACCCATCGAAGAGGTCGTGTGGCCGGCGTCCCTGCAACA
ACTGTCGCCCAGGTCCAAATTCGACCATCCCATTGCCGAAGTCGTGTGGC
CGGCCTCCCTCCAGCAGCTATTGCTTGGGGGTGGCTTCAATCAACCCATC
GCCCAAGTCGTGTGGCCGGCGCCCCTGCAGCAGCTATCGTGTGGAGATTG
TTTAGACCAGCCTCTTGACGAAGTCGTGTGGCCGGCCTTCATGCAGCAGC
TATCGTTTGGACATCTTTTCGACCACCCTCTTGACGAAGTCGTGTGGCCG
GCCTCCCTGCAGCAGCTGTCGTTTGGAGATTGTTTCGACCACCCTCTTGA
AGTCGTGTGGCCTGCCTCCCTGCAGCAGCTGTCGTTTGGAGATTGTTTCA
ACCAGCCTCTTGACGAAGTCGTGTGGCCTGCCTACCAGCCGCTATCGTTT
GGAGCTTGTTTCAACCAGCCTCTTGACGAAGTCGTGTGGCCGGCCTCACT
GCAGCAGCTATCGTTTGGAGATTGTTTCAACCGGCCTCTTGACGAAGTCG
TGTGGTCGGCCTTCCTGCGGCAGCTATCGCTAGGAGATGGTTTCAATCAG
CCTCTTGACGAAGTCGTGTGGTCGGCCTCCCTGCAGCAGCTGTCGCTTGG
CGATTGCTTCAACCAGCCTCTTGACGAACACGTGTGGCCGGCCTTCCTGC
GGCAGCTATCGTTCGGGGATCGTTTCAACCAGCCTCTTTACGTAGTCGTG
TGGCCGGCCTCCTTGCAGCAGCTATCGTTCGGATTCGAATTCAACCAGCC
CATCGCCAACGTCGTGTGGCCGGCCTTCGTGCAGCAGCTTTCGCTCGGGA
ATGAATTCAACCAGCCCGTCGCCCAAGTTGTGTGGCCGGCTTCCTTAAAA
AGTGTAACTCGCGACGGGGTTAGTCTGCTATGA
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