EsuBft1227_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1227_4a-0001
Unique NameEsuBft1227_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:179106..181095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1227_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length89
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMetallopeptidase, catalytic domain
Ec32 orthologEc-03_002080.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_4aEsuBft1227_4aEctocarpus subulatus male Bft15bgeneScaffold_420 179106..181095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_4a-0001-exonagat-exon-83429Ectocarpus subulatus male Bft15bexonScaffold_420 179106..179675 +
EsuBft1227_4a-0001-exonEsuBft1227_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 179867..180037 +
EsuBft1227_4a-0001-exonagat-exon-83431Ectocarpus subulatus male Bft15bexonScaffold_420 180492..180587 +
EsuBft1227_4a-0001-exonagat-exon-83430Ectocarpus subulatus male Bft15bexonScaffold_420 181036..181095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_4a-0001-cdsEsuBft1227_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 179106..179675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_4a-0001EsuBft1227_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 179106..181095 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1227_4a-0001 ID=EsuBft1227_4a-0001|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_420:179106..181095+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGCGCCATGAGTATATCAACTTGTGGGCACGCTCTGCTAGTATT
TTTTGCGGGAATGGACAGTGGACTCTGCCAAAGATCCCTCCATGGTGTTC
CCTTCGCAGGAATCGGTTCTGTCCGACCGCTGCGCAGTGCATCCCTCTCC
TCTTTCTCAACCCCGATGTCCACTGTTCTCAACGGGAGTGTATCTGAGAT
TGAGGGTGAGACGGCCACGAACTCGACATCCCTGAACTCAACAGCTGACG
CTGTCGATTCAATAGCCACAAATTCATCATGGTCATCTGAAACGGACGTA
AGTGTACCTGTCGGGGCGAACTCGTCCTCTTCATCGTCGTCCTCGTCAGT
CGTATACGGCTTGGAGCTCATATCAACCAACACCTCAGCCGCGGTGGGAG
ACACGGTCCTGTCGAATTCGTCCGGAGCTTTCACGAACGTGTCAGCCGTG
GAGAAGGAACTTGTCGAAACGCTCGAGGTTGACGAGCAAGTCACAGGTGA
TTTCGCATGTATGTGGACTATCTCAAGGTGTTCTGGCAACAACCTGTGTG
CCACTACTGTACAAGGAAAGAGGCGCACGGTGGCGTACCACGTGGAGCAC
CCCAACCTCGTTTCACCCGTCGACGATGAAATTACGAATCGTTCAGTACT
TGGTGAGGTCCAGCTGGGCGAGCTGCTGTGCGACGGCCTGGTTCAAGCAG
AAGACGCACCACTCCTTCAGTTCGCGCTTAGCGCTAACGAGATTTGGAAC
GGGGTCGTCATTGACCCCGCACCGGATGCGGATGAGGCTTTCCCACGAGG
CGTCAGCATGACTTGGGGCGAAGTATGCGACATTGAGGGGCAGCAGGAAT
CGACCTTGCAGCAGAACAGCTTCCGTAGCCCTTTGGACGCAGGGTAG
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protein sequence of EsuBft1227_4a-0001

>EsuBft1227_4 ID=EsuBft1227_4|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MSCAMSISTCGHALLVFFAGMDSGLCQRSLHGVPFAGIGSVRPLRSASLS
SFSTPMSTVLNGSVSEIEGETATNSTSLNSTADAVDSIATNSSWSSETDV
SVPVGANSSSSSSSSSVVYGLELISTNTSAAVGDTVLSNSSGAFTNVSAV
EKELVETLEVDEQVTGDFACMWTISRCSGNNLCATTVQGKRRTVAYHVEH
PNLVSPVDDEITNRSVLGEVQLGELLCDGLVQAEDAPLLQFALSANEIWN
GVVIDPAPDADEAFPRGVSMTWGEVCDIEGQQESTLQQNSFRSPLDAG
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mRNA from alignment at Scaffold_420:179106..181095+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1227_4a-0001 ID=EsuBft1227_4a-0001|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1990bp|location=Sequence derived from alignment at Scaffold_420:179106..181095+ (Ectocarpus subulatus male Bft15b)
ATGAGCTGCGCCATGAGTATATCAACTTGTGGGCACGCTCTGCTAGTATT
TTTTGCGGGAATGGACAGTGGACTCTGCCAAAGATCCCTCCATGGTGTTC
CCTTCGCAGGAATCGGTTCTGTCCGACCGCTGCGCAGTGCATCCCTCTCC
TCTTTCTCAACCCCGATGTCCACTGTTCTCAACGGGAGTGTATCTGAGAT
TGAGGGTGAGACGGCCACGAACTCGACATCCCTGAACTCAACAGCTGACG
CTGTCGATTCAATAGCCACAAATTCATCATGGTCATCTGAAACGGACGTA
AGTGTACCTGTCGGGGCGAACTCGTCCTCTTCATCGTCGTCCTCGTCAGT
CGTATACGGCTTGGAGCTCATATCAACCAACACCTCAGCCGCGGTGGGAG
ACACGGTCCTGTCGAATTCGTCCGGAGCTTTCACGAACGTGTCAGCCGTG
GAGAAGGAACTTGTCGAAACGCTCGAGGTTGACGAGCAAGTCACAGGTGA
TTTCGCATGTATGTGGACTATCTCAAGGTGTTCTGGCAACAACCTGTGTG
CCACTACTGTACAAGGAAAGGTAGGGCCTGAACTACCACCGAACATCGTT
GGCGGTGGTCGACGAAACGCTGGGAATGGTGCTCCGAAACTTTTTAAGTT
CCGGCTTCCGTGGCATAAAGGTGGCTGTCGTGAAGGGCAACAGTACATGA
ATACCTGTGGAATACGCGTTGCAAGCGTTCTTGATTAAGGAACACTATGG
TACGAGAGTAGAGGCGCACGGTGGCGTACCACGTGGAGCACCCCAACCTC
GTTTCACCCGTCGACGATGAAATTACGAATCGTTCAGTACTTGGTGAGGT
CCAGCTGGGCGAGCTGCTGTGCGACGGCCTGGTTCAAGCAGAAGACGCAC
CACTCCTTCAGTTCGCGCTTAGCGCTAACGAGGTTGGTCCATTGGTGGTG
TAGCGCTTGGCTCGATTTCAGGAAGCGTGGCCACGACTCTCACGTACCTC
GTAAGTCCAGCAAGGTTCCGTGCAACGGTGCACCTCCCACACTATTGTAC
ATGTACTTTAGAAAGGAAACCCTCTCTCTCCTCAGCCGTCCGTCGATCGT
CCAATACTTTGGCAGACGATCATCGCGAACCAAACTTCCTACACGGTCGT
CAGTGGGGAGACTTTTACGGGCGGAGTAGGTCGAAGGGTGAGCAGTGTAG
GCCTATTTTGCTGTAGGGCGCCCGTCCCTTGTTGGTGTTCCATTGCGGCT
AGGTTATATTGCGGAATGTTTCTGATAGTCACTGCCACCACCACCGCAAC
CATTCAACACCATCACCAACAATCAAAACAACGACAATTGCTGTGCGTTA
AACCAACGATGGCGTTCCCGAAACATTTTGTTGAAGATTTGGAACGGGGT
CGTCATTGACCCCGCACCGGATGCGGATGAGGCTTTCCCACGAGGCGTCA
GCATGACTTGGGGCGAAGTATGCGACATTGAGGTGAGCGCTTCTTGCTAC
TTATTGTTAGAGAGACATGCTCGCATCCCGCTTCGCCGTTAGAAGACACC
TTGCTCGTGCAAGGGGCAGGAAACTCAGAGTTGGCCTGAGCCATCGTTAG
GGTTCGGGCTGCAGATGCGCCCAAGTATATTTAGTTCTGAAACAGACACG
AGATAAAACATGCTTTCTCCGTTCGTAGAAAAACTTCGTTCGTCGAGTTC
TGTAGTGTGGTGTTCCTCAGTGCCATGGTAACACTATCAAGTATGAGCAG
TGGAAAACCGTCACGAAAGCCGTACTGGAATCTCCATGAACGACATCTTC
AAGATTTTGACCGGTGAGTATCACCAAGACCGCAAGTGCACGCGTGCAGA
CACCCAGGATGCCCTGGTGTCCAGCGGATAAGCCGCTGGTTGGGACCGCA
AACTGGTTGAAGCAAGTGTCCAAGACACAGGGGCAGCAGGAATCGACCTT
GCAGCAGAACAGCTTCCGTAGCCCTTTGGACGCAGGGTAG
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Coding sequence (CDS) from alignment at Scaffold_420:179106..181095+

>EsuBft1227_4a-0001 ID=EsuBft1227_4a-0001|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_420:179106..181095+ (Ectocarpus subulatus male Bft15b)
ATGAGCTGCGCCATGAGTATATCAACTTGTGGGCACGCTCTGCTAGTATT
TTTTGCGGGAATGGACAGTGGACTCTGCCAAAGATCCCTCCATGGTGTTC
CCTTCGCAGGAATCGGTTCTGTCCGACCGCTGCGCAGTGCATCCCTCTCC
TCTTTCTCAACCCCGATGTCCACTGTTCTCAACGGGAGTGTATCTGAGAT
TGAGGGTGAGACGGCCACGAACTCGACATCCCTGAACTCAACAGCTGACG
CTGTCGATTCAATAGCCACAAATTCATCATGGTCATCTGAAACGGACGTA
AGTGTACCTGTCGGGGCGAACTCGTCCTCTTCATCGTCGTCCTCGTCAGT
CGTATACGGCTTGGAGCTCATATCAACCAACACCTCAGCCGCGGTGGGAG
ACACGGTCCTGTCGAATTCGTCCGGAGCTTTCACGAACGTGTCAGCCGTG
GAGAAGGAACTTGTCGAAACGCTCGAGGTTGACGAGCAAGTCACAGGTGA
TTTCGCATGTATGTGGACTATCTCAAGGTGTTCTGGCAACAACCTGTGTG
CCACTACTGTACAAGGAAAGAGGCGCACGGTGGCGTACCACGTGGAGCAC
CCCAACCTCGTTTCACCCGTCGACGATGAAATTACGAATCGTTCAGTACT
TGGTGAGGTCCAGCTGGGCGAGCTGCTGTGCGACGGCCTGGTTCAAGCAG
AAGACGCACCACTCCTTCAGTTCGCGCTTAGCGCTAACGAGATTTGGAAC
GGGGTCGTCATTGACCCCGCACCGGATGCGGATGAGGCTTTCCCACGAGG
CGTCAGCATGACTTGGGGCGAAGTATGCGACATTGAGGGGCAGCAGGAAT
CGACCTTGCAGCAGAACAGCTTCCGTAGCCCTTTGGACGCAGGGTAG
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