EsuBft1574_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1574_5a-0001
Unique NameEsuBft1574_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:105223..105841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCQ0
ProteomeIdEsuBft1574_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length41
Hectar predicted targeting categoryother localisation
Evalue1.43e-29
EggNOG OGs28MX6@1|root,2QUFK@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1574_5aEsuBft1574_5aEctocarpus subulatus male Bft15bgeneScaffold_420 105223..105841 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1574_5a-0001-exonEsuBft1574_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 105223..105408 +
EsuBft1574_5a-0001-exonagat-exon-99238Ectocarpus subulatus male Bft15bexonScaffold_420 105611..105841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1574_5a-0001-cdsEsuBft1574_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 105223..105408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1574_5a-0001EsuBft1574_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 105223..105841 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1574_5a-0001 ID=EsuBft1574_5a-0001|Name=EsuBft1574_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_420:105223..105841+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCTGCGTCCGTCCGACTCTCGAAGGCCTGGAGGTGTTCGGCGC
TATGGCCTCAGAAGTGACCGAGGCACAGCTCTCGAGCATTTTCGAGTTCA
AGGGGGAGCCATTTCCCGAGCAGCAGAGTATTGGGGCTGTGGCAGGTTTC
GTCCGGCTATTGTCTAACCATTGCTCCAACTTGAAGGAAATACTTGAGAG
AGCAACCAGGCCGACTCGCAATACGCGGCGTTCCGCCGCGGCGGCTTCGG
CGACTGCTTGGCGGTGGCTCTGTCAGCCCCACAGCGGCTGCGAGCTCACC
GGTGGGCCCGCTTTTACTTCCGCTCTTCAACCTGACTGCCAGACGGTCAC
GTTCGTGGACGCGACCATCGCGGCCTATGCTTCGCCGTGCTACACCGCGC
GGGTGTCGGGCACGTGA
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protein sequence of EsuBft1574_5a-0001

>EsuBft1574_5 ID=EsuBft1574_5|Name=EsuBft1574_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MAACVRPTLEGLEVFGAMASEVTEAQLSSIFEFKGEPFPEQQSIGAVAGF
VRLLSNHCSNLKEILERATRPTRNTRRSAAAASATAWRWLCQPHSGCELT
GGPAFTSALQPDCQTVTFVDATIAAYASPCYTARVSGT
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mRNA from alignment at Scaffold_420:105223..105841+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1574_5a-0001 ID=EsuBft1574_5a-0001|Name=EsuBft1574_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=619bp|location=Sequence derived from alignment at Scaffold_420:105223..105841+ (Ectocarpus subulatus male Bft15b)
ATGGCTGCCTGCGTCCGTCCGACTCTCGAAGGCCTGGAGGTGTTCGGCGC
TATGGCCTCAGAAGTGACCGAGGCACAGCTCTCGAGCATTTTCGAGTTCA
AGGGGGAGCCATTTCCCGAGCAGCAGAGTATTGGGGCTGTGGCAGGTTTC
GTCCGGCTATTGTCTAACCATTGCTCCAACTTGAAGGTGATCAATCTCAA
TGAATGATCAATAGTCTAAGGGTTGTTACCGTTTGGTCGCAAAAGTAATC
TCGGATTTGAGACGAATCCGGATTTCGGAACGAAATCGGTTAGAGTCAGA
CATCCCTTGATGTTGGGAAATGAAATGACTCTACCTTGTTCAGTCCCCTT
CTCTCTCCCGAAATACGCCGGAGCTCTCGAGGAAACAGGAAATACTTGAG
AGAGCAACCAGGCCGACTCGCAATACGCGGCGTTCCGCCGCGGCGGCTTC
GGCGACTGCTTGGCGGTGGCTCTGTCAGCCCCACAGCGGCTGCGAGCTCA
CCGGTGGGCCCGCTTTTACTTCCGCTCTTCAACCTGACTGCCAGACGGTC
ACGTTCGTGGACGCGACCATCGCGGCCTATGCTTCGCCGTGCTACACCGC
GCGGGTGTCGGGCACGTGA
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Coding sequence (CDS) from alignment at Scaffold_420:105223..105841+

>EsuBft1574_5a-0001 ID=EsuBft1574_5a-0001|Name=EsuBft1574_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_420:105223..105841+ (Ectocarpus subulatus male Bft15b)
ATGGCTGCCTGCGTCCGTCCGACTCTCGAAGGCCTGGAGGTGTTCGGCGC
TATGGCCTCAGAAGTGACCGAGGCACAGCTCTCGAGCATTTTCGAGTTCA
AGGGGGAGCCATTTCCCGAGCAGCAGAGTATTGGGGCTGTGGCAGGTTTC
GTCCGGCTATTGTCTAACCATTGCTCCAACTTGAAGGAAATACTTGAGAG
AGCAACCAGGCCGACTCGCAATACGCGGCGTTCCGCCGCGGCGGCTTCGG
CGACTGCTTGGCGGTGGCTCTGTCAGCCCCACAGCGGCTGCGAGCTCACC
GGTGGGCCCGCTTTTACTTCCGCTCTTCAACCTGACTGCCAGACGGTCAC
GTTCGTGGACGCGACCATCGCGGCCTATGCTTCGCCGTGCTACACCGCGC
GGGTGTCGGGCACGTGA
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