EsuBft1108_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1108_7a-0001
Unique NameEsuBft1108_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_419contigScaffold_419:6224..8925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1108_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length127
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_7aEsuBft1108_7aEctocarpus subulatus male Bft15bgeneScaffold_419 6224..8925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_7a-0001EsuBft1108_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_419 6246..8917 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_7a-0001-exonagat-exon-109148Ectocarpus subulatus male Bft15bexonScaffold_419 6224..6944 -
EsuBft1108_7a-0001-exonEsuBft1108_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_419 7496..7755 -
EsuBft1108_7a-0001-exonagat-exon-109149Ectocarpus subulatus male Bft15bexonScaffold_419 8632..8925 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_7a-0001-exonagat-three_prime_utr-1020Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_419 6224..6245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_7a-0001-cdsEsuBft1108_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_419 6246..6944 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_7a-0001-exonagat-five_prime_utr-642Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_419 8918..8925 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1108_7a-0001 ID=EsuBft1108_7a-0001|Name=EsuBft1108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1275bp|location=Sequence derived from alignment at Scaffold_419:6224..8925- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTACGAACATGTCCAGCACCCGCCCAAAGAGAAAGACAACGCCCAGCGCA
AAGGCCCTGGATCTAGCGCGCGACGAGGTTGGCAAGAGGGAGGCGGCACG
GGCAGCCGGTCAGTTGGGCTTTGCGGCTCTAGGCCAGCAGCACGCCCGAG
ACCTCGAGGCAGGGGGAGGAGAGGAGCAAGCGGCCGGGGGAGGCGGCGAC
GATGTCCAAGTCGTGGCACCAGCAGCAGAGCAGGCTAGGGCTAGGAAGAG
CACGAAGTGGCCTCCTACTTACGACTTGGCGCTGGCAAGGGCGGGTCTGC
AGAACGAAGTGTGGAAAGTGAATGGGAGCGGGCGTTCGGTCGGCGAAAGG
TGGGACACCTGCTGGAAGACTCTCAACCAGGAGCCCTTGGTCAGGATGTT
CGAGGATAAGACGTCCAAAAATTGCAAGTCGCGCTACGACAAGATCGTTG
ACGACCAGAGCAAGAGCGATGGTAAAGCCCTGCCGGACTCCGGAGCCGGC
ACTGCTGAGAGTGGCTCGGAGGGCGAAGTAGAGAAGAATACCAAGGTCCA
GCTGGACAAAGTTCTGACCGCGAGAGTGGACGCGAAGGCTGCCGCAAGGC
AGGACTCGGAGGAGACCAAGCAGAAGAAAGCTGACGAGGCGGCCTCGCAC
TCCGCGATGGGGATGTGGGCCATCAACGCCCGATGCGGGCCGGGCGCGAA
GGCTACATCATTCCAAGAAGCTGTTGCCGCCGACAACATCGCGTTGGGTT
CCCGATCCGGTGCAGCGGCCGGTGGCCGTGCCAGCGGTCGGGTGAGTCCG
GCCAGCAGCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGG
CGCTGCCAGCGGTCGATCGAGCCTGACCATGAGTACGGGCGGGCTAGACG
ACGACTTATCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACCGCTT
GGCGAATTGGTGGAGCTCATGGGGTCGCTGAGCATTCCGACGCTTGCGCA
AAGTGCCGGGGTCACCACGGAGGAGGCGGACTACTTCCTCAACACGGGCT
TCACGGCCGACGAAGTTCAGCCGGAAAGGGCCGTGGCCATGGTGACGGTA
CTACTCGACAATAGGCTAGTCTCCAGCGCGACGGAGACAGCGTCCAGGAC
TACATGGATGATCTTGGTGAACAGGATATGCAGCTGCCCGGGTTTGATAG
GTTTGACGAGTCGGTCATGTTTAAACTGCTCGAGCTCTACGGCGTGGAAG
TGATGGACTTGCGCAGCCTGCCGGA
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protein sequence of EsuBft1108_7a-0001

>EsuBft1108_7 ID=EsuBft1108_7|Name=EsuBft1108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=414bp
MSSTRPKRKTTPSAKALDLARDEVGKREAARAAGQLGFAALGQQHARDLE
AGGGEEQAAGGGGDDVQVVAPAAEQARARKSTKWPPTYDLALARAGLQNE
VWKVNGSGRSVGERWDTCWKTLNQEPLVRMFEDKTSKNCKSRYDKIVDDQ
SKSDGKALPDSGAGTAESGSEGEVEKNTKVQLDKVLTARVDAKAAARQDS
EETKQKKADEAASHSAMGMWAINARCGPGAKATSFQEAVAADNIALGSRS
GAAAGGRASGRVSPASSIGGARPASEASAGGAASGRSSLTMSTGGLDDDL
SPAGSGPSRKVPPLGELVELMGSLSIPTLAQSAGVTTEEADYFLNTGFTA
DEVQPERAVAMVTVLLDNRLVSSATETASRTTWMILVNRICSCPGLIGLT
SRSCLNCSSSTAWK
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mRNA from alignment at Scaffold_419:6224..8925-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1108_7a-0001 ID=EsuBft1108_7a-0001|Name=EsuBft1108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2702bp|location=Sequence derived from alignment at Scaffold_419:6224..8925- (Ectocarpus subulatus male Bft15b)
CTACGAACATGTCCAGCACCCGCCCAAAGAGAAAGACAACGCCCAGCGCA
AAGGCCCTGGATCTAGCGCGCGACGAGGTTGGCAAGAGGGAGGCGGCACG
GGCAGCCGGTCAGTTGGGCTTTGCGGCTCTAGGCCAGCAGCACGCCCGAG
ACCTCGAGGCAGGGGGAGGAGAGGAGCAAGCGGCCGGGGGAGGCGGCGAC
GATGTCCAAGTCGTGGCACCAGCAGCAGAGCAGGCTAGGGCTAGGAAGAG
CACGAAGTGGCCTCCTACTTACGACTTGGCGCTGGCAAGGGCGGGTGAGT
CTTTCCCCGCGCAAGGGTATGCTCTGTTTTTCTAGAGAGAGGCGTTTGTT
GGCTTGGATGTGTTCCCTCCCCAAACCCCACCCCCATACGCTCCGAACGC
GACACAGCACTGCAGGAGCAGCCGGCCACAGCAGTGGTATACGTACTTGC
TGTCTCCGTACTGATGCGATTTCCTGTGCTGGAGTTAGTTGTTTCCTTTG
CTGGGATTGAGGGAGCGACCCATGTGCGCGCACACATATGCACGCTGTTT
TTGAACTGTAAAAGGGAGCCACTCCGAACCAGATTGTTGATCCTTGGCAA
CGAGGGTGCAACGAGTGCACAACATATACGAAAGATTCAATCGGATAGCA
GCGGAGTAGGGTAGGAACACAAAGCTGTATTCGGTGTTCGCAGGGGAGAT
ACAAGTCTTGCTTGGCGAAGAAGGTGATACTTTCTTGCACTGGTTCCGAC
GTGGAAAAAATGCACNTCGCTACACAACGGCACATAGCCGGATTATTATG
GTGGGCGCGGATCCGCTGCTGCGTCCCACAGGAGATGCAGTCTACCCGTG
GCACATCATGTTGCATCATATTACAAGGGGTTACCAGCAGCGAGACTTAT
CCTGCATCCCGCTGTAGCCACAGTAGATGCTGTCTACCCGAAAGAATGTC
GAAACAACTACTGCGAAGCACCGCGGACCCGGTGCAGTTGACACTCTGCG
CAATAGCCATTCCGTGCGCTGCAAGACGGCCGGTGTTCACGGACTCGTTT
AGTGGCGAGACCTATGCTCCCTCCTCTACTCAAAACGCACATGTATCTGG
TGAAAACAATGAAGCCGAAGCAAGTCCCCACTACGACATTCAAAGGTGCT
CCTACCCTTGTCCTCTACAGGTCTGCAGAACGAAGTGTGGAAAGTGAATG
GGAGCGGGCGTTCGGTCGGCGAAAGGTGGGACACCTGCTGGAAGACTCTC
AACCAGGAGCCCTTGGTCAGGATGTTCGAGGATAAGACGTCCAAAAATTG
CAAGTCGCGCTACGACAAGATCGTTGACGACCAGAGCAAGAGCGATGGTA
AAGCCCTGCCGGACTCCGGAGCCGGCACTGCTGAGAGTGGCTCGGAGGGC
GAAGTAGAGAAGAATACCAAGGTCCAGCTGGTGAGGGGTCTAGAGCCAGT
AAGCTATCTCTACCTTTTGTGACGGGCGCAAGCCTGAGTGTACACGATCA
TGGCACAGTCTAAACAAGACGGGCACGAATATCTGCACATGGAGAATCCA
CAATCCATAGAGTATCGTGAAACACCTGCGCTGTCCCGACCGAAGAAAAT
GCTTGCCGTCGTCACCAACGTTGCACTTGCAGATAAGAGGGGTACGCACA
GGGTTAGCCGTAAGTCCAAAATGCGCAGCATGACAAAAGAAAGACAGAAG
TAGATAGACAGCACGAAAGCCCGAGTGCTACACGCCAGGCGACGCAAAAC
GTGCAGAGAGTTAGCTTGCTGAGACGGTCCTTCACCCACAAAATCAAAAC
AGCGTCGAGGTTTTCACTCCCACTCTGTATTGTTTAGGGGCGTAACGTAG
CAGTGTTGACACGGAAGTACAAAACAGACGATGCATACAGCTATCGCCGA
CGCTAGTGTTGCAATTTGTAAGTCGTAGAGCTGACGAGCTGCCGCGCCGC
TGTTGCTTCTTGTCCGCGATGTGCCGCACAGGACAAAGTTCTGACCGCGA
GAGTGGACGCGAAGGCTGCCGCAAGGCAGGACTCGGAGGAGACCAAGCAG
AAGAAAGCTGACGAGGCGGCCTCGCACTCCGCGATGGGGATGTGGGCCAT
CAACGCCCGATGCGGGCCGGGCGCGAAGGCTACATCATTCCAAGAAGCTG
TTGCCGCCGACAACATCGCGTTGGGTTCCCGATCCGGTGCAGCGGCCGGT
GGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAGCAGCATCGGGGGGGCGAG
GCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTGCCAGCGGTCGATCGAGCC
TGACCATGAGTACGGGCGGGCTAGACGACGACTTATCGCCCGCGGGGAGC
GGGCCATCGAGGAAGGTTCCACCGCTTGGCGAATTGGTGGAGCTCATGGG
GTCGCTGAGCATTCCGACGCTTGCGCAAAGTGCCGGGGTCACCACGGAGG
AGGCGGACTACTTCCTCAACACGGGCTTCACGGCCGACGAAGTTCAGCCG
GAAAGGGCCGTGGCCATGGTGACGGTACTACTCGACAATAGGCTAGTCTC
CAGCGCGACGGAGACAGCGTCCAGGACTACATGGATGATCTTGGTGAACA
GGATATGCAGCTGCCCGGGTTTGATAGGTTTGACGAGTCGGTCATGTTTA
AACTGCTCGAGCTCTACGGCGTGGAAGTGATGGACTTGCGCAGCCTGCCG
GA
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Coding sequence (CDS) from alignment at Scaffold_419:6224..8925-

>EsuBft1108_7a-0001 ID=EsuBft1108_7a-0001|Name=EsuBft1108_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1245bp|location=Sequence derived from alignment at Scaffold_419:6224..8925- (Ectocarpus subulatus male Bft15b)
ATGTCCAGCACCCGCCCAAAGAGAAAGACAACGCCCAGCGCAAAGGCCCT
GGATCTAGCGCGCGACGAGGTTGGCAAGAGGGAGGCGGCACGGGCAGCCG
GTCAGTTGGGCTTTGCGGCTCTAGGCCAGCAGCACGCCCGAGACCTCGAG
GCAGGGGGAGGAGAGGAGCAAGCGGCCGGGGGAGGCGGCGACGATGTCCA
AGTCGTGGCACCAGCAGCAGAGCAGGCTAGGGCTAGGAAGAGCACGAAGT
GGCCTCCTACTTACGACTTGGCGCTGGCAAGGGCGGGTCTGCAGAACGAA
GTGTGGAAAGTGAATGGGAGCGGGCGTTCGGTCGGCGAAAGGTGGGACAC
CTGCTGGAAGACTCTCAACCAGGAGCCCTTGGTCAGGATGTTCGAGGATA
AGACGTCCAAAAATTGCAAGTCGCGCTACGACAAGATCGTTGACGACCAG
AGCAAGAGCGATGGTAAAGCCCTGCCGGACTCCGGAGCCGGCACTGCTGA
GAGTGGCTCGGAGGGCGAAGTAGAGAAGAATACCAAGGTCCAGCTGGACA
AAGTTCTGACCGCGAGAGTGGACGCGAAGGCTGCCGCAAGGCAGGACTCG
GAGGAGACCAAGCAGAAGAAAGCTGACGAGGCGGCCTCGCACTCCGCGAT
GGGGATGTGGGCCATCAACGCCCGATGCGGGCCGGGCGCGAAGGCTACAT
CATTCCAAGAAGCTGTTGCCGCCGACAACATCGCGTTGGGTTCCCGATCC
GGTGCAGCGGCCGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAGCAG
CATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTGCCA
GCGGTCGATCGAGCCTGACCATGAGTACGGGCGGGCTAGACGACGACTTA
TCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACCGCTTGGCGAATT
GGTGGAGCTCATGGGGTCGCTGAGCATTCCGACGCTTGCGCAAAGTGCCG
GGGTCACCACGGAGGAGGCGGACTACTTCCTCAACACGGGCTTCACGGCC
GACGAAGTTCAGCCGGAAAGGGCCGTGGCCATGGTGACGGTACTACTCGA
CAATAGGCTAGTCTCCAGCGCGACGGAGACAGCGTCCAGGACTACATGGA
TGATCTTGGTGAACAGGATATGCAGCTGCCCGGGTTTGATAGGTTTGACG
AGTCGGTCATGTTTAAACTGCTCGAGCTCTACGGCGTGGAAGTGA
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