EsuBft1108_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1108_8a-0001
Unique NameEsuBft1108_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_419contigScaffold_419:5250..6222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1108_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length76
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_8aEsuBft1108_8aEctocarpus subulatus male Bft15bgeneScaffold_419 5250..6222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_8a-0001-exonagat-exon-109150Ectocarpus subulatus male Bft15bexonScaffold_419 5250..5726 -
EsuBft1108_8a-0001-exonEsuBft1108_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_419 5937..6222 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_8a-0001-exonagat-three_prime_utr-1021Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_419 5250..5434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_8a-0001-cdsEsuBft1108_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_419 5435..5726 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_8a-0001-exonagat-five_prime_utr-643Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_419 6203..6222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1108_8a-0001EsuBft1108_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_419 5435..6202 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1108_8a-0001 ID=EsuBft1108_8a-0001|Name=EsuBft1108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=763bp|location=Sequence derived from alignment at Scaffold_419:5250..6222- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGAATTGGTTTCACAGCGGATGGCCCATAGAACGTGTTACGCCGGACAA
GGTGCTTCAGGTTACGAAGCGGGTGGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCTTCGGGAAACCGTGGAAGGAAGCCCCGTGC
CAAGACCAATAAGCTCGCCGAGGATGGGCTAGATAGCTTCATGGAGCGAC
AGGTGGCTGACGCTCGGGCACTCGCCGATCAGAAACGTGAAGAGGACGAG
AGGAGGCGGGCGGTGGAAGCTAAACGAGAAGTAGGGAGGAGGAAAGAGCT
CCTGGACATGATGGCCCACGAGAGGGCAATGCGGGAAGATGAAAGGAAAC
ACGACAGACAAGAGCGTGAAGTGGAGAGGGCCGCTGCATGGGCAGAGCAA
AAGGCAGATCGTGATCACCAAATCAGGATGATGCAACTCCAGGTAGATCC
GGCGAAGGCGAAGGGCAACAATAACTAGCTAGCTGGTTGAGGTTGCTGTT
GCTGCAGTTGCTAGGGCATGCGTTGCATGTGTTGTCTATTTTTTTCAACA
GCAGGCTCTTCAAAAAAATATCGTGGCGTCCGTTGCGCCTTGCGCGTGTT
TTTCTGGGGGGCTTGCCTGTTCGGGGTAGGGAAAAATGGGAATGGGTTTT
CGCCCTTGCTGCT
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protein sequence of EsuBft1108_8a-0001

>EsuBft1108_8 ID=EsuBft1108_8|Name=EsuBft1108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=185bp
MAHRTCYAGQGASGYEAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXPSGNRGRKPRAKTNKLAEDGLDSFMERQVADARA
LADQKREEDERRRAVEAKREVGRRKELLDMMAHERAMREDERKHDRQERE
VERAAAWAEQKADRDHQIRMMQLQVDPAKAKGNNN
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mRNA from alignment at Scaffold_419:5250..6222-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1108_8a-0001 ID=EsuBft1108_8a-0001|Name=EsuBft1108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=973bp|location=Sequence derived from alignment at Scaffold_419:5250..6222- (Ectocarpus subulatus male Bft15b)
TCGAATTGGTTTCACAGCGGATGGCCCATAGAACGTGTTACGCCGGACAA
GGTGCTTCAGGTTACGAAGCGGGTGGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCTTCGGGAAACCGTGGAAGGAAGCCCCGTGC
CAAGACCAATAAGCTCGCCGAGGATGGGCTAGATAGGTAAGGTTGTTCGT
CGACTCTGCCCATGTCTTGGTTCTGGCAACTCCCTGGTGTGGTAGACGCT
GTGCATTATTGGAAGATTATTTTGGTGGACGTAACCTGTACCAGAGAAGT
GTCATCGCAGCATTATTGTTGGCTACTCCGTCAGGGAGGTACCAGAGCTT
TCCCTACCCTGGTGCCTCTCTTGCGCCGTTGTGCCACGTGTCCCAGCTTC
ATGGAGCGACAGGTGGCTGACGCTCGGGCACTCGCCGATCAGAAACGTGA
AGAGGACGAGAGGAGGCGGGCGGTGGAAGCTAAACGAGAAGTAGGGAGGA
GGAAAGAGCTCCTGGACATGATGGCCCACGAGAGGGCAATGCGGGAAGAT
GAAAGGAAACACGACAGACAAGAGCGTGAAGTGGAGAGGGCCGCTGCATG
GGCAGAGCAAAAGGCAGATCGTGATCACCAAATCAGGATGATGCAACTCC
AGGTAGATCCGGCGAAGGCGAAGGGCAACAATAACTAGCTAGCTGGTTGA
GGTTGCTGTTGCTGCAGTTGCTAGGGCATGCGTTGCATGTGTTGTCTATT
TTTTTCAACAGCAGGCTCTTCAAAAAAATATCGTGGCGTCCGTTGCGCCT
TGCGCGTGTTTTTCTGGGGGGCTTGCCTGTTCGGGGTAGGGAAAAATGGG
AATGGGTTTTCGCCCTTGCTGCT
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Coding sequence (CDS) from alignment at Scaffold_419:5250..6222-

>EsuBft1108_8a-0001 ID=EsuBft1108_8a-0001|Name=EsuBft1108_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=558bp|location=Sequence derived from alignment at Scaffold_419:5250..6222- (Ectocarpus subulatus male Bft15b)
ATGGCCCATAGAACGTGTTACGCCGGACAAGGTGCTTCAGGTTACGAAGC
GGGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
TTCGGGAAACCGTGGAAGGAAGCCCCGTGCCAAGACCAATAAGCTCGCCG
AGGATGGGCTAGATAGCTTCATGGAGCGACAGGTGGCTGACGCTCGGGCA
CTCGCCGATCAGAAACGTGAAGAGGACGAGAGGAGGCGGGCGGTGGAAGC
TAAACGAGAAGTAGGGAGGAGGAAAGAGCTCCTGGACATGATGGCCCACG
AGAGGGCAATGCGGGAAGATGAAAGGAAACACGACAGACAAGAGCGTGAA
GTGGAGAGGGCCGCTGCATGGGCAGAGCAAAAGGCAGATCGTGATCACCA
AATCAGGATGATGCAACTCCAGGTAGATCCGGCGAAGGCGAAGGGCAACA
ATAACTAG
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