EsuBft546_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_3a-0001
Unique NameEsuBft546_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:312680..313286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV18911-PA
ProteomeIdEsuBft546_3
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length607
Hectar predicted targeting categoryother localisation
Evalue2.79e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-15
Date creation2016-06-15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_3aEsuBft546_3aEctocarpus subulatus male Bft15bgeneScaffold_417 312680..313286 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_3a-0001-exonEsuBft546_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 312680..313286 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_3a-0001-exonagat-five_prime_utr-11542Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 312680..312884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_3a-0001-cdsEsuBft546_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 312885..313154 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_3a-0001-exonagat-three_prime_utr-18184Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 313155..313286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_3a-0001EsuBft546_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 312885..313154 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_3a-0001 ID=EsuBft546_3a-0001|Name=EsuBft546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=607bp|location=Sequence derived from alignment at Scaffold_417:312680..313286+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTCGGCTTGTGGCGTTTACGGATTCATCCTTCGGAGCAAACCCGGACA
ACGGAAGATCTACCACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATC
AGCTACGGTGCGAAGACTCAAACTTTAACCGCGCAAAGCACGGTCGAAGC
CGAGATTTAAGCACCTAGCTACTCAGCCAGAGAGGCGGTCTACATCTAAA
ATTTTATGACGGAACTCAAGTTCAAGACGTTCGGATCGGTTCCCATCAAC
AGCGACAGCACCGGAGCGCTGACAGTGGCCGGGAATGTCATGCACAAACA
ACGCACGAAGCACGTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTAC
TACGGGGACAAATCACTCTTTACCACCGGCCCAGCGAGCACCAGTTGGCT
GATATCGCGACCAAGTACCTCCCAAAGCACCGATTCGCCTCTATCATTCA
GCAGATCAAGGACTTCTCGTGTTGATCGAAGATCTGTGAGCTTCCTTCCA
TACCCGCCATACCAGAAGGAACTATTTTCGATACGATGCCAACGGACGGG
TCGAGGTAGACAAGGATATGGTGATGCGGTCGACCATTGTGAATTAGTTG
CTTGATC
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protein sequence of EsuBft546_3a-0001

>EsuBft546_3 ID=EsuBft546_3|Name=EsuBft546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MTELKFKTFGSVPINSDSTGALTVAGNVMHKQRTKHVALRYFFIRELVLR
GQITLYHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
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mRNA from alignment at Scaffold_417:312680..313286+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_3a-0001 ID=EsuBft546_3a-0001|Name=EsuBft546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=607bp|location=Sequence derived from alignment at Scaffold_417:312680..313286+ (Ectocarpus subulatus male Bft15b)
GTTTCGGCTTGTGGCGTTTACGGATTCATCCTTCGGAGCAAACCCGGACA
ACGGAAGATCTACCACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATC
AGCTACGGTGCGAAGACTCAAACTTTAACCGCGCAAAGCACGGTCGAAGC
CGAGATTTAAGCACCTAGCTACTCAGCCAGAGAGGCGGTCTACATCTAAA
ATTTTATGACGGAACTCAAGTTCAAGACGTTCGGATCGGTTCCCATCAAC
AGCGACAGCACCGGAGCGCTGACAGTGGCCGGGAATGTCATGCACAAACA
ACGCACGAAGCACGTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTAC
TACGGGGACAAATCACTCTTTACCACCGGCCCAGCGAGCACCAGTTGGCT
GATATCGCGACCAAGTACCTCCCAAAGCACCGATTCGCCTCTATCATTCA
GCAGATCAAGGACTTCTCGTGTTGATCGAAGATCTGTGAGCTTCCTTCCA
TACCCGCCATACCAGAAGGAACTATTTTCGATACGATGCCAACGGACGGG
TCGAGGTAGACAAGGATATGGTGATGCGGTCGACCATTGTGAATTAGTTG
CTTGATC
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Coding sequence (CDS) from alignment at Scaffold_417:312680..313286+

>EsuBft546_3a-0001 ID=EsuBft546_3a-0001|Name=EsuBft546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_417:312680..313286+ (Ectocarpus subulatus male Bft15b)
ATGACGGAACTCAAGTTCAAGACGTTCGGATCGGTTCCCATCAACAGCGA
CAGCACCGGAGCGCTGACAGTGGCCGGGAATGTCATGCACAAACAACGCA
CGAAGCACGTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGG
GGACAAATCACTCTTTACCACCGGCCCAGCGAGCACCAGTTGGCTGATAT
CGCGACCAAGTACCTCCCAAAGCACCGATTCGCCTCTATCATTCAGCAGA
TCAAGGACTTCTCGTGTTGA
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