EsuBft1131_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1131_3a-0001
Unique NameEsuBft1131_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_409contigScaffold_409:143846..145277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1131_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length78
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_3aEsuBft1131_3aEctocarpus subulatus male Bft15bgeneScaffold_409 143846..145277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_3a-0001EsuBft1131_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_409 144738..145277 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_3a-0001-exonagat-exon-9906Ectocarpus subulatus male Bft15bexonScaffold_409 143846..144008 +
EsuBft1131_3a-0001-exonagat-exon-9907Ectocarpus subulatus male Bft15bexonScaffold_409 144156..144326 +
EsuBft1131_3a-0001-exonEsuBft1131_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_409 144688..144759 +
EsuBft1131_3a-0001-exonagat-exon-9905Ectocarpus subulatus male Bft15bexonScaffold_409 144901..145277 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_3a-0001-exonagat-five_prime_utr-794Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_409 143846..144008 +
EsuBft1131_3a-0001-exonagat-five_prime_utr-795Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_409 144156..144326 +
EsuBft1131_3a-0001-exonagat-five_prime_utr-796Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_409 144688..144737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1131_3a-0001-cdsEsuBft1131_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_409 144738..144759 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1131_3a-0001 ID=EsuBft1131_3a-0001|Name=EsuBft1131_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=783bp|location=Sequence derived from alignment at Scaffold_409:143846..145277+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGCCCGTACAGGTACCCTTTTAACACCCTCTCGTGCATCCTATGCTTGT
TGCGCAAGATGGATCGGGGCTCGTCCATTTATCTGTGTTCTTTGGAAGTA
AATAATTCTGTGTCTAGTAGCAGTAATGCACCGGATTATCACTAGTCATC
ATTGAGAAAAAGAAGTACTATTTCATACCACACGCCTCCGAAGCCTACTC
TTACGTGTTTCATCTCTGCGAGCTGCGAGCTATGGGCGAGCTGGAAGCTG
GAAGTTTTTTGTGTGTTTTTTTTTCAAGTGCGGAGACGCGGAGACCACCG
CGCAAGTGAAAAAATGTTCGAAAAGGGTAGGTAGGCTGTCATTTTCAGCA
TCGGCCTGCTCTGTTTTGCAAAACACCAAGCTAAATGAGCTCCAGCAGAG
CAGCAGATAATGCCCTTGAGCACGAAATGGAAGATGTTCGCAACAAGACG
GAGTTGTTCGAGAAGGCTGCTCAAGACCGATCGCTCTCTTCGGAGCACTT
TTTCCACCTCAACAAGGCCATCGCCCGTGCTGAGAGAGAGCTTACCGTCG
TCACTGCCTCGGAACCTGATATACGACAGGGAGTAGACATTGTTGAAAAG
CTCCGCGCTCTTGTACAAGGGCAACAACACATCGTAACCGAGGACACAAT
CTTTTCCGATAAGCAAGCGATGGGGGATTTACAAATGTTGCTGCCTGGTC
TGGGGGAAGTGGAGCTCCGAGAGTTCTTGCGAGAGTTCTTGCATGGGCTC
AGCGGTGACAGGGTGAGTGCAGCAGGCCAGTAG
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protein sequence of EsuBft1131_3a-0001

>EsuBft1131_3 ID=EsuBft1131_3|Name=EsuBft1131_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=132bp
MSSSRAADNALEHEMEDVRNKTELFEKAAQDRSLSSEHFFHLNKAIARAE
RELTVVTASEPDIRQGVDIVEKLRALVQGQQHIVTEDTIFSDKQAMGDLQ
MLLPGLGEVELREFLREFLHGLSGDRVSAAGQ
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mRNA from alignment at Scaffold_409:143846..145277+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1131_3a-0001 ID=EsuBft1131_3a-0001|Name=EsuBft1131_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1432bp|location=Sequence derived from alignment at Scaffold_409:143846..145277+ (Ectocarpus subulatus male Bft15b)
TAGCCCGTACAGGTACCCTTTTAACACCCTCTCGTGCATCCTATGCTTGT
TGCGCAAGATGGATCGGGGCTCGTCCATTTATCTGTGTTCTTTGGAAGTA
AATAATTCTGTGTCTAGTAGCAGTAATGCACCGGATTATCACTAGTCATC
ATTGAGAAAAAGAGTACTATTTCATACCACACGCCTCCGAAGCCTACTCT
TANAAGATGGATCGGGGCTCGTCCATTTATCTGTGTTCTTTGGAAGTAAA
TAATTCTGTGTCTAGTAGCAGTAATGCACCGGATTATCACTAGTCATCAT
TGAGAAAAAGAGTACTATTTCATACCACACGCCTCCGAAGCCTACTCTTA
CGTGTTTCATCTCTGCGAGCTGCGAGCTATGGGCGAGCTGGAAGCTGGAA
GTTTTTTGTGTGTTTTTTTTTCAAGTGCGGAGACGCGGAGACCACCGCGC
AAGTGAAAAAATGTTCGAAAAGGGTAGGTAGGTACGTAGGACTCCCCACA
ACATTGAATTTATGGGGGGGGGGAGGGGGGTGGCCCATTGAAATCGGACA
TTGGACGTGGCCGATTTGGAATCGGCCGTAGCCGACTAGGAATCGGCCGT
AGCCGACTGACATTCGGCTATCCCCTGGCCAAAATCGGCTGCTTTGTTTG
CAAAATCGGCCGTTTTTTTTTGCGGCCGTTTCCCGGCCGAAATTTCCAGA
AATCGGCTCTTTCGGCCGCGGCCGATGGAGGACAGGCCTAGAAATTTCCA
GCAACTCTCGTCCATCGCGAAGCTATGGTCTATGACGTATATATATAGTA
GACATATATACGTCATAGACCATAGCCCCCGCACCCCCGTAGGCTGTCAT
TTTCAGCATCGGCCTGCTCTGTTTTGCAAAACACCAAGCTAAATGAGCTC
CAGCAGAGCAGCAGGTACGTAAGCATCCTTGCTTGTACCTCGCCGTGTAA
TATGTAGAGATCCGGTGTCTGCGGCACGCGGTTTATTGTCCGTATTCTGT
GTCTCATCTCTCCTCGCTTGTTCCCCGCCTTCTCGAATCCCTCTCCCGTA
AACAGATAATGCCCTTGAGCACGAAATGGAAGATGTTCGCAACAAGACGG
AGTTGTTCGAGAAGGCTGCTCAAGACCGATCGCTCTCTTCGGAGCACTTT
TTCCACCTCAACAAGGCCATCGCCCGTGCTGAGAGAGAGCTTACCGTCGT
CACTGCCTCGGAACCTGATATACGACAGGGAGTAGACATTGTTGAAAAGC
TCCGCGCTCTTGTACAAGGGCAACAACACATCGTAACCGAGGACACAATC
TTTTCCGATAAGCAAGCGATGGGGGATTTACAAATGTTGCTGCCTGGTCT
GGGGGAAGTGGAGCTCCGAGAGTTCTTGCGAGAGTTCTTGCATGGGCTCA
GCGGTGACAGGGTGAGTGCAGCAGGCCAGTAG
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Coding sequence (CDS) from alignment at Scaffold_409:143846..145277+

>EsuBft1131_3a-0001 ID=EsuBft1131_3a-0001|Name=EsuBft1131_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=399bp|location=Sequence derived from alignment at Scaffold_409:143846..145277+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCCAGCAGAGCAGCAGATAATGCCCTTGAGCACGAAATGGAAGA
TGTTCGCAACAAGACGGAGTTGTTCGAGAAGGCTGCTCAAGACCGATCGC
TCTCTTCGGAGCACTTTTTCCACCTCAACAAGGCCATCGCCCGTGCTGAG
AGAGAGCTTACCGTCGTCACTGCCTCGGAACCTGATATACGACAGGGAGT
AGACATTGTTGAAAAGCTCCGCGCTCTTGTACAAGGGCAACAACACATCG
TAACCGAGGACACAATCTTTTCCGATAAGCAAGCGATGGGGGATTTACAA
ATGTTGCTGCCTGGTCTGGGGGAAGTGGAGCTCCGAGAGTTCTTGCGAGA
GTTCTTGCATGGGCTCAGCGGTGACAGGGTGAGTGCAGCAGGCCAGTAG
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