EsuBft997_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft997_9a-0001
Unique Name	EsuBft997_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:814181..818616 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft997_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	387
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft997_9a	EsuBft997_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 814181..818616 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft997_9a-0001	EsuBft997_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 818359..818616 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft997_9a-0001-exon	agat-exon-86305	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 814181..815180 -
EsuBft997_9a-0001-exon	agat-exon-86306	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 815354..816884 -
EsuBft997_9a-0001-exon	agat-exon-86307	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 817163..817805 -
EsuBft997_9a-0001-exon	EsuBft997_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 817920..818616 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft997_9a-0001-exon	agat-three_prime_utr-23906	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 814181..815180 -
EsuBft997_9a-0001-exon	agat-three_prime_utr-23907	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 815354..816884 -
EsuBft997_9a-0001-exon	agat-three_prime_utr-23908	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 817163..817805 -
EsuBft997_9a-0001-exon	agat-three_prime_utr-23909	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 817920..818358 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft997_9a-0001-cds	EsuBft997_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 818359..818616 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:814181..818616-
coding sequence from alignment at Scaffold_129:814181..818616-

spliced messenger RNA

>EsuBft997_9a-0001 ID=EsuBft997_9a-0001|Name=EsuBft997_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3871bp|location=Sequence derived from alignment at Scaffold_129:814181..818616- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCCCCTACTTCGATATACGCAGAGGAGGACAAGATGAACGCTGT
CATGGGCCTGATGCACCCGGCCTATCGCCTACAATACCACCGCCAGACCT
ACGGCGACGACGAGTACCAGGTCATGCTGCCTGTGTCGTCCACGCTGGAG
GAAGATGACACGCTGCTACCTCCTCTCCCCGTGGATAGTCAGGCCGGCGC
TCCTAAAAAACTCGGGCCGAAGAAGTTCAAGAGGATCCCGGGGCGCGGGG
ACAAGTAGGCGTCGTCGTCATTCAACACGCGAGTTCCTGAACTCGGCCCG
GCTGCATCCGGAACCACGGCGGCTCCCTCTCTGTCGCGGGGGGGTGCCAC
GGCGGCTCCCACTCTGTCACAGGGGGGTGCCACGGCGGCTCCATCTTTGT
CACAGGGGGGGCGTGCGGGCGGATCGGTCATGGTCGGGGGGATGTTGATC
AACTTGACACGCTGAGTGCCGGCCGCCGAATGACGACCTGTGTTGTTGCC
GTTTTTTCCGTGCCATGCACTCCGCGATGTTTTATTTTCGTGCCATACAC
TCCCCAGTGAAGAATCGAGGATCGCGGGCCTTGACACTCATCTAGCCGAC
GACCAAATGGGTGATGACGATGGTGAAAAATGGTGGGCAGGGAGGTTTTT
AGGATCTTTGACACTTTCGTCTTTCTTTCGCTTTCGTGTTCCCTGCGGGG
AAGTAAACGAGCGTGTCGTGTTCAGATGTAGAGGTCGGAACCCTTTATTT
TGGTGTGCCATTCGAGGTCCTTGCGAGGGGAGGCGGGCGAGGAGGGCGGG
GCGGCCACCACTTTCCTTTGAGTGTGTTCCCAAGTTTATGTTTGGTTTTT
CCCGACTTCACCTCTAATAATGTAGCTAGCTGTCGATTCGCATTTTTCTG
CGGAAACCGACGCGTAAGTGTTGAATCGAGGCAAAGCAACTGGTGTGTTC
CACAACGCCAAATTCATACTATAGTCTACTATGTATGATTGACTACCTAA
TCTGCTCAAAAGGTCATTCATACACGATGGATCATTTTCTGAGGACTCCT
GTGACACATGAACGCAGCATGCAGCCTTTTAACTCTCGCCTAAAACACCT
GCATGACTCTCATCTGCATTGTGAATTGAGGATACTACACCACAATTATA
TCTTCAAGATAACATCTACCTCTACTCAACAGTGATGGTGACGACGCAAG
GCACTGAGCCTGGGACCGAGTCGACCGAATCGGACGTTGACGGTTGTTGG
TGCACGCCACCGCCGTGCGGTCGATTAACACCCAAACATGCACGCACGGA
AAGAAGACGGAAATACACAGCACCTGGCACAACCAAACAGGTATGCATAA
TGGCCGTAGCTCCGTGCTCCTAGCTGCCTGGTAAAATCCCTTGCGGAGCA
GTGCGTCCGCGGAGCAGCGCAGAGTGTGTGTGTTTTTATTATTAGCATCG
ACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAGTCTTAGTGCGGTTG
AAAACACAAAACACTTCTATCTACCATGAACTGGGNCGGATCAAAGACAG
AAATAGCAGCAACAGAAGAAAACTGCACGTGTCTACCAAGGCTACTACCT
TGTACTCGAGTTCTTTTTGGAGTACTTTCACCATTATCCTCCTTGTGTTC
GCTACCATCATTCTGATCCTCATTTTGACAAGAATCCCTGGGCAGTTCTT
CCCTAGTCCTACGTTTTTTTTGGGGGGGAAGGTCATCTGGCTCAAACTCT
TTGCTCTCTTCCACTCCTCCATGTTTTCCTCCTCCATCGTCGTCTTCGTC
CTCCTTTCTTCCCTTTCTCTTTCCTTCGTCTCCGTCGCTCCCAGAAGAAT
TACCCTCATGTCGCAAAGATCCCAACCGATTGACCCTGGTGGAAGTTGGT
CGATCAGTAGTCCACGACGTTTGAACACATCGCGAGTTCGCATGGACAGA
AAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAA
AGCTTTCAGGCGGACTAACGCTCCTTCGTCGTCAAAATTCCCCCGGCAAA
AAGCTTCGTGCGCTAAGTGGTTGGCGATAGCAACGATGAGTCGATTGGTG
CCTTCGCCAAGACCACCATTCGTTGAAAAAGCAGCGGTAAGGAGGGTAGA
TCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCGGCTC
GATCTTCGAGGGCGGATCCTGACTTTTGCATCGACTTGTCGATGCTTCGA
CCTGCGGATGGGTTGACGATTGTTACGTCTATAAGAATTTACTTGGTGCA
GAGTTCCTCTTCCTTCTCTCCTGCGTGCAATCCTGGGGGGATCACCAAAT
CCATCTTATATAACCCCTTTTCCCTACCAGTGCCTGTGGTAAAAGGGGAA
GAATCCTCAACGGCGATGCGCATATGGCACTCACGCAGTGTCTTGAGGAT
TACGCAAACCATCCTGTTATGGAGGAAGGTTGAGGCGCCTGTCTTGGTAC
AGACGAGGGGGTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACGATGCA
CCTGCATGCACACCACAATTTTTTCCTGTGTCGCAGTCTGCTCGATCGTG
ACTCCCCAGTACACGGCCGATTGACTCTCGATATAGATCAGGCAGTATTC
TTTCATCTTCTGACAGCCCTTGCGTTGTCACCCACGACAAAACTCCCTTG
CCTTTCGATTCCTCCAAGCGGATCAATGCTCTCTTCTTTGACATTTCCTC
GTCTGCTACCTTCTCCAAGTCTGTCTCCACCATGTGACGCACTGCTGCAT
GAAAAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGGCTTGGTAGTGTTGA
CCATATTCATTTCGGTTGTAGGTAGACGGTGGTTGATGTTCTGTGTCAGG
GTTTCCATCTTCACTGGGTTTTCCCGCCTTCCCTGCTTCCAACAGGTAAA
CTCCTTTTAGGGCGGGGGTTGACTAATCACTTGTGGCAAGTTTAGCCCAT
GACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATCTCCTCTAG
CTTCTTGAGTGAGTCAATTAAAACCAATCCCGTCGGTAGCTGGGCAAGCC
GGGGTAGACATTGCTCAACTGTGTATCCTGTCGATTCTTGCACTGACTTG
GAGAACACCAGTGCTTGCCCTTCCGCAAAAGCCGATTCTCGAACGAGATC
ATTGCTCGTGATTCGTAGTCCTCCTTCACGCATGGGTAGGTGCACCTGTG
CCCGAGCTGTCCCTTCGAAGAAATATACCTCCTCGCTCTTCGTCGGGTCT
GCGCATACTTCTTTGTCCGTTGGTATTCTCATGCTGTCGGCCATCTTGCC
AAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTTTTCTAG
CGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGAAACAAA
CGTGGCACAACAGATAAACGTAGTAGTTGACAGCTGGCTTGGGGGTCGTC
AAGCGTTACTAGGCGGAGCATCAATTCCGCCGGGTCACCATGGGCGATTT
TGGACATGAAATTCCTCTGGAACTCTTTTGTCCCTGCTGGGATCCCGACT
ACTGGCATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAACTGTTG
CTGTTGTCGTTTGTCAAAGAGGACATGCAAAGACGCTCCGGGAAAAGCAC
TTTGGATTTCGGGAGACTGAGCTCAATCCCTTTTTGGGAGAGAAATTCCT
GAATCCAATTCGTTACAGTGGATATGGCCTGCATGTTCTTAGCCAAACCT
GGTGGAAGATGTGCTTGGAGGTCGTCGACGTATCCGATGAGTTTGACTCC
TGGCACAGATGGCTTGTTGTT

protein sequence of EsuBft997_9a-0001

>EsuBft997_9 ID=EsuBft997_9|Name=EsuBft997_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MLPPTSIYAEEDKMNAVMGLMHPAYRLQYHRQTYGDDEYQVMLPVSSTLE
EDDTLLPPLPVDSQAGAPKKLGPKKFKRIPGRGDK

mRNA from alignment at Scaffold_129:814181..818616-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft997_9a-0001 ID=EsuBft997_9a-0001|Name=EsuBft997_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4436bp|location=Sequence derived from alignment at Scaffold_129:814181..818616- (Ectocarpus subulatus male Bft15b)
ATGTTGCCCCCTACTTCGATATACGCAGAGGAGGACAAGATGAACGCTGT
CATGGGCCTGATGCACCCGGCCTATCGCCTACAATACCACCGCCAGACCT
ACGGCGACGACGAGTACCAGGTCATGCTGCCTGTGTCGTCCACGCTGGAG
GAAGATGACACGCTGCTACCTCCTCTCCCCGTGGATAGTCAGGCCGGCGC
TCCTAAAAAACTCGGGCCGAAGAAGTTCAAGAGGATCCCGGGGCGCGGGG
ACAAGTAGGCGTCGTCGTCATTCAACACGCGAGTTCCTGAACTCGGCCCG
GCTGCATCCGGAACCACGGCGGCTCCCTCTCTGTCGCGGGGGGGTGCCAC
GGCGGCTCCCACTCTGTCACAGGGGGGTGCCACGGCGGCTCCATCTTTGT
CACAGGGGGGGCGTGCGGGCGGATCGGTCATGGTCGGGGGGATGTTGATC
AACTTGACACGCTGAGTGCCGGCCGCCGAATGACGACCTGTGTTGTTGCC
GTTTTTTCCGTGCCATGCACTCCGCGATGTTTTATTTTCGTGCCATACAC
TCCCCAGTGAAGAATCGAGGATCGCGGGCCTTGACACTCATCTAGCCGAC
GACCAAATGGGTGATGACGATGGTGAAAAATGGTGGGCAGGGAGGTTTTT
AGGATCTTTGACACTTTCGTCTTTCTTTCGCTTTCGTGTTCCCTGCGGTA
CGTTGATTAAGTTCAATGCATGGCTCAAGCGAATGTGCTGATCCATTCGC
TTTGATTGTGCATCGTTGATTTGTGGCACACACTTCCGGGGTACACGTTA
CTGCTACACAGGGGAAGTAAACGAGCGTGTCGTGTTCAGATGTAGAGGTC
GGAACCCTTTATTTTGGTGTGCCATTCGAGGTCCTTGCGAGGGGAGGCGG
GCGAGGAGGGCGGGGCGGCCACCACTTTCCTTTGAGTGTGTTCCCAAGTT
TATGTTTGGTTTTTCCCGACTTCACCTCTAATAATGTAGCTAGCTGTCGA
TTCGCATTTTTCTGCGGAAACCGACGCGTAAGTGTTGAATCGAGGCAAAG
CAACTGGTGTGTTCCACAACGCCAAATTCATACTATAGTCTACTATGTAT
GATTGACTACCTAATCTGCTCAAAAGGTCATTCATACACGATGGATCATT
TTCTGAGGACTCCTGTGACACATGAACGCAGCATGCAGCCTTTTAACTCT
CGCCTAAAACACCTGCATGACTCTCATCTGCATTGTGAATTGAGGATACT
ACACCACAATTATATCTTCAAGATAACATCTACCTCTACTCAACAGTGAT
GGTGACGACGCAAGGCACTGAGCCTGGGACCGAGTCGACCGAATCGGACG
TTGACGGTTGTTGGTGCACGCCACCGCCGTGCGGTCGATTAACACCCAAA
CATGCACGCACGGAAAGAAGACGGAAATACACAGCACCTGGCACAACCAA
ACAGGTATGCATAATGGCCGTAGCTCCGTGCTCCTAGCTGCCTGGTAAAA
TCCCTTGCGGAGCAGTGCGTCCGCGGAGCAGCGCAGAGTGTGTGTGTTTT
TATTATTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAG
TCTCAGTGCGGTTGAAAACACAAAACACTTTTATCTGCCATGAACTGGGA
CCCCGTGAGGGGTCAGCATGGAGGAGGCTAAACTATCCTTCGGATCAAAG
ACAGAAATAGCAGCAACAGAAGNACCAAACAGGTATGCATAATGGCCGTA
GCTCCGTGCTCCTAGCTGCCTGGTAAAATCCCTTGCGGAGCAGTGCGTCC
GCGGAGCAGCGCAGAGTGTGTGTGTTTTTATTATTAGCATCGACCGCGCT
AACCGGCTGACCAATGAAAAGACGTCAGTCTTAGTGCGGTTGAAAACACA
AAACACTTCTATCTACCATGAACTGGGNCGGATCAAAGACAGAAATAGCA
GCAACAGAAGAAAACTGCACGTGTCTACCAAGGCTACTACCTTGTACTCG
AGTTCTTTTTGGAGTACTTTCACCATTATCCTCCTTGTGTTCGCTACCAT
CATTCTGATCCTCATTTTGACAAGAATCCCTGGGCAGTTCTTCCCTAGTC
CTACGTTTTTTTTGGGGGGGAAGGTCATCTGGCTCAAACTCTTTGCTCTC
TTCCACTCCTCCATGTTTTCCTCCTCCATCGTCGTCTTCGTCCTCCTTTC
TTCCCTTTCTCTTTCCTTCGTCTCCGTCGCTCCCAGAAGAATTACCCTCA
TGTCGCAAAGATCCCAACCGATTGACCCTGGTGGAAGTTGGTCGATCAGT
AGTCCACGACGTTTGAACACATCGCGAGTTCGCATGGACAGAAAACGAGC
TAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAAAGCTTTCA
GGCGGACTAACGCTCCTTCGTCGTCAAAATTCCCCCGGCAAAAAGCTTCG
TGCGCTAAGTGGTTGGCGATAGCAACGATGAGTCGATTGGTGCCTTCGCC
AAGACCACCATTCGTTGAAAAAGCAGCGGTAAGGAGGGTAGATCTAGACG
GGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCGGCTCGATCTTCG
AGGGCGGATCCTGACTTTTGCATCGACTTGTCGATGCTTCGACCTGCGGA
TGGGTTGACGATTGTTACGTCTATAAGAATTTACTTGGTGCAGAGTTCCT
CTTCCTTCTCTCCTGCGTGCAATCCTGGGGGGATCACCAAATCCATCTTA
TATAACCCCTTTTCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTC
AACGGCGATGCGCATATGGCACTCACGCAGTGTCTTGAGGATTACGCAAA
CCATCCTGTTATGGAGGAAGGTTGAGGCGCCTGTCTTGGTACAGACGAGG
GGGTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACGATGCACCTGCATG
CACACCACAATTTTTTCCTGTGTCGCAGTCTGCTCGATCGTGACTCCCCA
GTACACGGCCGATTGACTCTCGATATAGATCAGGCAGTATTCTTTCATCT
TCTGACAGCCCTTGCGTTGTCACCCACGACAAAACTCCCTTGCCTTTCGA
TTCCTCCAAGCGGATCAATGCTCTCTTCTTTGACATTTCCTCGTCTGCTA
CCTTCTCCAAGTCTGTCTCCACCATGTGACGCACTGCTGCATGAAAAGGT
TTCGAAAGGAGAGCTTGGGCTCCAAAGGCTTGGTAGTGTTGACCATATTC
ATTTCGGTTGTAGGTAGACGGTGGTTGATGTTCTGTGTCAGGGTTTCCAT
CTTCACTGGGTTTTCCCGCCTTCCCTGCTTCCAACAGGTAAACTCCTTTT
AGGGCGGGGGTTGACTAATCACTTGTGGCAAGTTTAGCCCATGACTGCCC
AACAGCTTTTTCAAGCTNTATTCATTTCGGTTGTAGGTAGACGGTGGTTG
ATGTTCTGTGTCAGGGTTTCCATCTTCACTGGGTTTTCCCGCCTTCCCTG
CTTCCAACAGGTAAACTCCTTTTAGGGCGGGGGTTGACTAATCACTTGTG
GCAAGTTTAGCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGT
GATGATCTCCTCTAGCTTCTTGAGTGAGTCAATTAAAACCAATCCCGTCG
GTAGCTGGGCAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGAT
TCTTGCACTGACTTGGAGAACACCAGTGCTTGCCCTTCCGCAAAAGCCGA
TTCTCGAACGAGATCATTGCTCGTGATTCGTAGTCCTCCTTCACGCATGG
GTAGGTGCACCTGTGCCCGAGCTGTCCCTTCGAAGAAATATACCTCCTCG
CTCTTCGTCGGGTCTGCGCATACTTCTTTGTCCGTTGGTATTCTCATGCT
GTCGGCCATCTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGT
TGTCATGTTTTCTAGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTC
AGCAGATGAAACAAACGTGGCACAACAGATAAACGTAGTAGTTGACAGCT
GGCTTGGGGGTCGTCAAGCGTTACTAGGCGGAGCATCAATTCCGCCGGGT
CACCATGGGCGATTTTGGACATGAAATTCCTCTGGAACTCTTTTGTCCCT
GCTGGGATCCCGACTACTGGCATGCCACCTTCAGCAACTGACAGACCAAT
TTTCGTCAACTGTTGCTGTTGTCGTTTGTCAAAGAGGACATGCAAAGACG
CTCCGGGAAAAGCACTTTGGATTTCGGGAGACTGAGCTCAATCCCTTTTT
GGGAGAGAAATTCCTGAATCCAATTCGTTACAGTGGATATGGCCTGCATG
TTCTTAGCCAAACCTGGTGGAAGATGTGCTTGGAGGTCGTCGACGTATCC
GATGAGTTTGACTCCTGGCACAGATGGCTTGTTGTT

Coding sequence (CDS) from alignment at Scaffold_129:814181..818616-

>EsuBft997_9a-0001 ID=EsuBft997_9a-0001|Name=EsuBft997_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_129:814181..818616- (Ectocarpus subulatus male Bft15b)
ATGTTGCCCCCTACTTCGATATACGCAGAGGAGGACAAGATGAACGCTGT
CATGGGCCTGATGCACCCGGCCTATCGCCTACAATACCACCGCCAGACCT
ACGGCGACGACGAGTACCAGGTCATGCTGCCTGTGTCGTCCACGCTGGAG
GAAGATGACACGCTGCTACCTCCTCTCCCCGTGGATAGTCAGGCCGGCGC
TCCTAAAAAACTCGGGCCGAAGAAGTTCAAGAGGATCCCGGGGCGCGGGG
ACAAGTAG