EsuBft3762_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3762_3a-0001
Unique NameEsuBft3762_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:351212..351937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog37727.XP_002151007.1
ProteomeIdEsuBft3762_3
Protein domainsIPR001138
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl4751|Fungi
Length48
Evalue1.44e-05
EggNOG OGs2D9JK@1|root,2TEZ3@2759|Eukaryota,3ASPK@33154|Opisthokonta,3PHTD@4751|Fungi,3R5E1@4890|Ascomycota
Date last modified2016-06-15
Date creation2016-06-15
DescriptionGAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0000981
GO0003824
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3762_3aEsuBft3762_3aEctocarpus subulatus male Bft15bgeneScaffold_392 351212..351937 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3762_3a-0001-exonEsuBft3762_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 351212..351346 -
EsuBft3762_3a-0001-exonagat-exon-111348Ectocarpus subulatus male Bft15bexonScaffold_392 351584..351937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3762_3a-0001-cdsEsuBft3762_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 351212..351346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3762_3a-0001EsuBft3762_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 351212..351937 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3762_3a-0001 ID=EsuBft3762_3a-0001|Name=EsuBft3762_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=489bp|location=Sequence derived from alignment at Scaffold_392:351212..351937- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAATGTCCAAAAAGAAGTGCCCGACCTTGGTAGTTGACGACGCTGC
ACCACCATGCCAAGGGAAGGAGGACGAAGGGGTATACGCCGTCAACCAGG
GGAACAACAGGGCCGAGCTCCGCAGCTCTTGTGATCGGTGCTGGGTGAAG
AAGCGTCGTTGTCCTGGTGGACAGCCCTGCCTTCGTTGCAGGCGTGGGTC
CCATTCATGTTCATACTCAGCGAAGAGGAAGCTAGGGCGGCCGCCCGCTC
TTGCTTCCCCCATCAATGCCGGTGCCGTACGAAGAGCCGGTGACAACGGC
GACAGCACCACCAGCAGCAGCAGCAGGCCGACACATCATCATNATGCCGG
TGCCCACCTTCCAGTGACGGAGAAACATTACTCGGAAATAGTGGGTCCAT
CGTTTTCGTCCTCTTCCGCAACCGGGCTCGGTGGGCTTCAGGAGTCCAGC
TTCCTCGAGTGCTTCCTGAAGCACTGCAGCCCCATGTGA
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protein sequence of EsuBft3762_3a-0001

>EsuBft3762_3 ID=EsuBft3762_3|Name=EsuBft3762_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=162bp
MPMSKKKCPTLVVDDAAPPCQGKEDEGVYAVNQGNNRAELRSSCDRCWVK
KRRCPGGQPCLRCRRGSHSCSYSAKRKLGRPPALASPINAGAVRRAGDNG
DSTTSSSSRPTHHHXAGAHLPVTEKHYSEIVGPSFSSSSATGLGGLQESS
FLECFLKHCSPM
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mRNA from alignment at Scaffold_392:351212..351937-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3762_3a-0001 ID=EsuBft3762_3a-0001|Name=EsuBft3762_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=726bp|location=Sequence derived from alignment at Scaffold_392:351212..351937- (Ectocarpus subulatus male Bft15b)
ATGCCAATGTCCAAAAAGAAGTGCCCGACCTTGGTAGTTGACGACGCTGC
ACCACCATGCCAAGGGAAGGAGGACGAAGGGGTATACGCCGTCAACCAGG
GGAACAACAGGGCCGAGCTCCGCAGCTCTTGTGATCGGTGCTGGGTGAAG
AAGCGTCGTTGTCCTGGTGGACAGCCCTGCCTTCGTTGCAGGCGTGGGTC
CCATTCATGTTCATACTCAGCGAAGAGGAAGCTAGGGCGGCCGCCCGCTC
TTGCTTCCCCCATCAATGCCGGTGCCGTACGAAGAGCCGGTGACAACGGC
GACAGCACCACCAGCAGCAGCAGCAGGCCGACACATCATCATNATGCCGG
TGCCGTACGAAGAGCCGGTGACAACGGCGACAGCACCACCAGCAGCAGCA
GCAGGCCGACACATCATCATCAGCAGCAGCGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGGCCGCCTGCGGGTATTACCGCCTTCATC
AGCCGAGGGCGTCGATAAGAAGACACCAACACCATCCCCCAAGAAGCGGA
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTTCCA
GTGACGGAGAAACATTACTCGGAAATAGTGGGTCCATCGTTTTCGTCCTC
TTCCGCAACCGGGCTCGGTGGGCTTCAGGAGTCCAGCTTCCTCGAGTGCT
TCCTGAAGCACTGCAGCCCCATGTGA
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Coding sequence (CDS) from alignment at Scaffold_392:351212..351937-

>EsuBft3762_3a-0001 ID=EsuBft3762_3a-0001|Name=EsuBft3762_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_392:351212..351937- (Ectocarpus subulatus male Bft15b)
ATGCCAATGTCCAAAAAGAAGTGCCCGACCTTGGTAGTTGACGACGCTGC
ACCACCATGCCAAGGGAAGGAGGACGAAGGGGTATACGCCGTCAACCAGG
GGAACAACAGGGCCGAGCTCCGCAGCTCTTGTGATCGGTGCTGGGTGAAG
AAGCGTCGTTGTCCTGGTGGACAGCCCTGCCTTCGTTGCAGGCGTGGGTC
CCATTCATGTTCATACTCAGCGAAGAGGAAGCTAGGGCGGCCGCCCGCTC
TTGCTTCCCCCATCAATGCCGGTGCCGTACGAAGAGCCGGTGACAACGGC
GACAGCACCACCAGCAGCAGCAGCAGGCCGACACATCATCATNATGCCGG
TGCCCACCTTCCAGTGACGGAGAAACATTACTCGGAAATAGTGGGTCCAT
CGTTTTCGTCCTCTTCCGCAACCGGGCTCGGTGGGCTTCAGGAGTCCAGC
TTCCTCGAGTGCTTCCTGAAGCACTGCAGCCCCATGTGA
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