EsuBft151_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft151_2a-0001
Unique NameEsuBft151_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:124987..126541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LS77
ProteomeIdEsuBft151_2
Protein domainsIPR015901
Protein domainsIPR001576
Ownerapollo_admin@sb-roscoff.fr
Notephosphoglycerate kinase os:synechococcus (strain ja-3-3ab) gn:pgk pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1239
Hectar predicted targeting categoryother localisation
Evalue8.5e-42
EggNOG OGsCOG0126@1|root,KOG1367@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionphosphoglycerate kinase activity
COG categoryG
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
GO0019253
GO0004618
GO0016310
GO0006096
EC2.7.2.3
GO0009507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft151_2aEsuBft151_2aEctocarpus subulatus male Bft15bgeneScaffold_392 124987..126541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_2a-0001-exonagat-exon-79004Ectocarpus subulatus male Bft15bexonScaffold_392 124987..126114 -
EsuBft151_2a-0001-exonEsuBft151_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 126431..126541 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_2a-0001-exonagat-three_prime_utr-4562Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_392 124987..125985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_2a-0001-cdsEsuBft151_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 125986..126114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_2a-0001EsuBft151_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 125986..126541 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft151_2a-0001 ID=EsuBft151_2a-0001|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1239bp|location=Sequence derived from alignment at Scaffold_392:124987..126541- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTGTTCGAGTTCGACAAGTTTGCCGCGGGAACGTTCGCCGTGGC
CAGCTGCCTGGCCGACCTCACCTCGAAGGGAGCGATCACCATCATCGGAG
GCGGAGACTCGGTGGCTGCCGTGGAGAAGGCCAACCTCGCCGACAAGATG
TCCCACATTTCCACCGGCGGCGGAGCTAGCCTAGAGCTGCTCGAGGGCAA
GGAGCTTCCGGGAGTAAACGCTATCGAGGAGAGGTCTTGAACTGGCATGC
TCGTGACGCTTGCCGTTCGCCGCTTGCTTCGCTGCTGCGGTGGGTAGCGC
GGTATAGACCTCGTTTAGTGCACTGACGGAATCAGTGGTAGCATTTAGGT
GAAGGCATCGGAAATTCATGCGGTATTTTGCTGTAGGACTGGGTATGTTC
TGTTCTGTTGTATCCCATAAATGTAGGAACGTCGTGATGGGTTGACTAAC
AGCGTGGATTTGACTATGCTCTTTTCCGACAAACGTGTATTTAAAGGTGT
AGGCGTATTGTTTGATTCATTCTTCCAGAGTTTTTCACAAGTTGTGCATT
TGGCCCTCCCATCATTGCCGTTTCGGCTTCCCGTCTATAACGAAATTCTG
GATCTCGAGTACCAGGACCTGGTTTGCGTCTCAACGCAGGCAGGGTTCAG
ACAGGCTCGTCTATTTCAATTTCTTTGGTGCAGTGACTTGTGGACGTTTT
GGAGGATATTTCATGGTTGCTCGCGTCTATGCGGGAATGTGGCAGGGTAG
ACGTGGGACGGAGTTAGCCGGTGTGGGGGAAAACACCCCCGTGATTTTTT
GCGCGTGGAATTAGTTTCAGTTCTCTATCATCACCATCAATAACATAGGG
TAGCTGCCAACGTTGAATATTAGAAAGGGACGAAGGAGACGAAGAAATTT
GGCAAACAATTAGGTTCTCGGTGATCGTGTGTTACGTGGTGTGCTTCTGG
TGTATGGTCTTGGCTAACACTGTTACTGAATTGGGCAAATTTCTCTTGCC
TCTCTCACTTGGAAGCCCATCGAGAAGGGCGGTAAGTTGAGCACCAGCTC
TGTTGCGCAACTTCTTGTGCCGCTCAGGTTTGGCGCTCATTTGTGTAGAC
CTGACAACGCAGGGGCATTTACTTCCACTCTCGTATGGGTCTGGCACAGA
TAATGCATGGGCACATTTCCTGCAAAGAACACAGGTGTCACCGAAAACCT
CGTCGACGCCCTTAATGTCTTATCTGCTACATTTCGTTG
back to top

protein sequence of EsuBft151_2a-0001

>EsuBft151_2 ID=EsuBft151_2|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=79bp
MGVFEFDKFAAGTFAVASCLADLTSKGAITIIGGGDSVAAVEKANLADKM
SHISTGGGASLELLEGKELPGVNAIEERS
back to top

mRNA from alignment at Scaffold_392:124987..126541-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft151_2a-0001 ID=EsuBft151_2a-0001|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1555bp|location=Sequence derived from alignment at Scaffold_392:124987..126541- (Ectocarpus subulatus male Bft15b)
ATGGGGGTGTTCGAGTTCGACAAGTTTGCCGCGGGAACGTTCGCCGTGGC
CAGCTGCCTGGCCGACCTCACCTCGAAGGGAGCGATCACCATCATCGGAG
GCGGAGACTCGGTACGATTGAGACATTCCCGGAAACATGTTGCTTGAAGA
GAACGTAACAAAACAAGTCCTACTCATCACTACCGAAAGTCAGTAGACAC
ACACGCCACCCATGGTCAATTACAAGGTGGTGGCCTTAAGGCGGTGGAGA
TGCCAGCAGGCTCCGCGGTCCGGCAACAGGTAGTACATTGTTGTTCGAGG
AAAAAAGTGCATCGAGGCGCGAACGCCTTCTGATCGTCCTCTTGCTGCCC
CCGCCCCCTCTTCCTCGCGCGCTCCCCACTCACTGCGACCACCTCTGCAA
ATACCAACTGAAAAATGAATTAACCAGGTGGCTGCCGTGGAGAAGGCCAA
CCTCGCCGACAAGATGTCCCACATTTCCACCGGCGGCGGAGCTAGCCTAG
AGCTGCTCGAGGGCAAGGAGCTTCCGGGAGTAAACGCTATCGAGGAGAGG
TCTTGAACTGGCATGCTCGTGACGCTTGCCGTTCGCCGCTTGCTTCGCTG
CTGCGGTGGGTAGCGCGGTATAGACCTCGTTTAGTGCACTGACGGAATCA
GTGGTAGCATTTAGGTGAAGGCATCGGAAATTCATGCGGTATTTTGCTGT
AGGACTGGGTATGTTCTGTTCTGTTGTATCCCATAAATGTAGGAACGTCG
TGATGGGTTGACTAACAGCGTGGATTTGACTATGCTCTTTTCCGACAAAC
GTGTATTTAAAGGTGTAGGCGTATTGTTTGATTCATTCTTCCAGAGTTTT
TCACAAGTTGTGCATTTGGCCCTCCCATCATTGCCGTTTCGGCTTCCCGT
CTATAACGAAATTCTGGATCTCGAGTACCAGGACCTGGTTTGCGTCTCAA
CGCAGGCAGGGTTCAGACAGGCTCGTCTATTTCAATTTCTTTGGTGCAGT
GACTTGTGGACGTTTTGGAGGATATTTCATGGTTGCTCGCGTCTATGCGG
GAATGTGGCAGGGTAGACGTGGGACGGAGTTAGCCGGTGTGGGGGAAAAC
ACCCCCGTGATTTTTTGCGCGTGGAATTAGTTTCAGTTCTCTATCATCAC
CATCAATAACATAGGGTAGCTGCCAACGTTGAATATTAGAAAGGGACGAA
GGAGACGAAGAAATTTGGCAAACAATTAGGTTCTCGGTGATCGTGTGTTA
CGTGGTGTGCTTCTGGTGTATGGTCTTGGCTAACACTGTTACTGAATTGG
GCAAATTTCTCTTGCCTCTCTCACTTGGAAGCCCATCGAGAAGGGCGGTA
AGTTGAGCACCAGCTCTGTTGCGCAACTTCTTGTGCCGCTCAGGTTTGGC
GCTCATTTGTGTAGACCTGACAACGCAGGGGCATTTACTTCCACTCTCGT
ATGGGTCTGGCACAGATAATGCATGGGCACATTTCCTGCAAAGAACACAG
GTGTCACCGAAAACCTCGTCGACGCCCTTAATGTCTTATCTGCTACATTT
CGTTG
back to top

Coding sequence (CDS) from alignment at Scaffold_392:124987..126541-

>EsuBft151_2a-0001 ID=EsuBft151_2a-0001|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=240bp|location=Sequence derived from alignment at Scaffold_392:124987..126541- (Ectocarpus subulatus male Bft15b)
ATGGGGGTGTTCGAGTTCGACAAGTTTGCCGCGGGAACGTTCGCCGTGGC
CAGCTGCCTGGCCGACCTCACCTCGAAGGGAGCGATCACCATCATCGGAG
GCGGAGACTCGGTGGCTGCCGTGGAGAAGGCCAACCTCGCCGACAAGATG
TCCCACATTTCCACCGGCGGCGGAGCTAGCCTAGAGCTGCTCGAGGGCAA
GGAGCTTCCGGGAGTAAACGCTATCGAGGAGAGGTCTTGA
back to top