EsuBft1019_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1019_3a-0001
Unique NameEsuBft1019_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:55355..55769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNE3
ProteomeIdEsuBft1019_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length33
Hectar predicted targeting categoryother localisation
Evalue1.12e-14
EggNOG OGsKOG3777@1|root,KOG3777@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionzinc finger CCCH-type containing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_3aEsuBft1019_3aEctocarpus subulatus male Bft15bgeneScaffold_392 55355..55769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_3a-0001-exonEsuBft1019_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 55355..55545 -
EsuBft1019_3a-0001-exonagat-exon-46351Ectocarpus subulatus male Bft15bexonScaffold_392 55625..55769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_3a-0001-cdsEsuBft1019_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 55355..55545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_3a-0001EsuBft1019_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 55355..55769 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1019_3a-0001 ID=EsuBft1019_3a-0001|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=336bp|location=Sequence derived from alignment at Scaffold_392:55355..55769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGTACGGGGAAGAAACGGCAGCGACCAGAAGGAGGAAGCTGGAG
TGGGGGGCAACCACCGGACGGGCAGCGGCCGAACGGCGACGACGATCACG
ATAACGACGATCGTGGCCGTCGTTGGAGCGGGGAGAGAGGACAAGGGGAT
ACCATGGCGCCACAAGCACGGCGCGAAGCCGCCGCTGCCGGCAGCGGAGG
CGTTCTTGGTGCCCACAGCCGCCGCGCAGGAGAATACGGCGGTGGTAGTA
GCCAGGGGCCGCTCGAGGGCAGCAGCCACAACGATGGCAAGCGCCGCTGC
AACACCGTCCCCTCCGACTGCGGCTGGTTCCACTAG
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protein sequence of EsuBft1019_3a-0001

>EsuBft1019_3 ID=EsuBft1019_3|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MAGTGKKRQRPEGGSWSGGQPPDGQRPNGDDDHDNDDRGRRWSGERGQGD
TMAPQARREAAAAGSGGVLGAHSRRAGEYGGGSSQGPLEGSSHNDGKRRC
NTVPSDCGWFH
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mRNA from alignment at Scaffold_392:55355..55769-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1019_3a-0001 ID=EsuBft1019_3a-0001|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_392:55355..55769- (Ectocarpus subulatus male Bft15b)
ATGGCAGGTACGGGGAAGAAACGGCAGCGACCAGAAGGAGGAAGCTGGAG
TGGGGGGCAACCACCGGACGGGCAGCGGCCGAACGGCGACGACGATCACG
ATAACGACGATCGTGGCCGTCGTTGGAGCGGGGAGAGAGGACAAGGTGAC
TGGCGAACGTGCGGGATCAGCAGGCGGGGGAAGGGGGCGGCGGCGAGAGA
GAGAGAGTTCCCAAAGACAGGAAGGGGATACCATGGCGCCACAAGCACGG
CGCGAAGCCGCCGCTGCCGGCAGCGGAGGCGTTCTTGGTGCCCACAGCCG
CCGCGCAGGAGAATACGGCGGTGGTAGTAGCCAGGGGCCGCTCGAGGGCA
GCAGCCACAACGATGGCAAGCGCCGCTGCAACACCGTCCCCTCCGACTGC
GGCTGGTTCCACTAG
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Coding sequence (CDS) from alignment at Scaffold_392:55355..55769-

>EsuBft1019_3a-0001 ID=EsuBft1019_3a-0001|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_392:55355..55769- (Ectocarpus subulatus male Bft15b)
ATGGCAGGTACGGGGAAGAAACGGCAGCGACCAGAAGGAGGAAGCTGGAG
TGGGGGGCAACCACCGGACGGGCAGCGGCCGAACGGCGACGACGATCACG
ATAACGACGATCGTGGCCGTCGTTGGAGCGGGGAGAGAGGACAAGGGGAT
ACCATGGCGCCACAAGCACGGCGCGAAGCCGCCGCTGCCGGCAGCGGAGG
CGTTCTTGGTGCCCACAGCCGCCGCGCAGGAGAATACGGCGGTGGTAGTA
GCCAGGGGCCGCTCGAGGGCAGCAGCCACAACGATGGCAAGCGCCGCTGC
AACACCGTCCCCTCCGACTGCGGCTGGTTCCACTAG
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