EsuBft95_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft95_10a-0001
Unique NameEsuBft95_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:245249..246017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft95_10
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length76
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft95_10aEsuBft95_10aEctocarpus subulatus male Bft15bgeneScaffold_129 245249..246017 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_10a-0001-exonEsuBft95_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 245249..246017 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_10a-0001-exonagat-three_prime_utr-23504Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 245249..245626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_10a-0001-cdsEsuBft95_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 245627..245929 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_10a-0001-exonagat-five_prime_utr-15298Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 245930..246017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_10a-0001EsuBft95_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 245627..245929 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft95_10a-0001 ID=EsuBft95_10a-0001|Name=EsuBft95_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=769bp|location=Sequence derived from alignment at Scaffold_129:245249..246017- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGGAGACGAA
AGGGAAGGGGGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTA
CAACAAGGTCGAGGATGGGGCGGCATGGCTCATGAGGAAATGGCACCGGC
AGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCA
GAGAGTACGGCCATCTCAGGACCGAAGGGAAAGAGAGTTGGGGAAGCGGC
GGTGGGGGGGAAGAACCGGCGACCGGGCACGGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGC
GCCCTATTTCCCTCCCTGCTGTATGCTTTACTCCTTTATGCATGTCCTTT
GTATTGCCTCCGGCCTCTGTGCTGTGTTTCTTTTTTTCATGACCTCCCTG
CCTACTCTGTTGTGTTGGGTACTGTGATCTCGCCTTTGCTGTTGCCTTTG
TTGTTTTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTG
CTCCGTCACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGGCACGTTAC
CCTTTGATTTTTCTTTGGGCGGGTGTGGGAAGCGTCCTCCTTTATTTTTG
TTTTTGTTCTATTTTGATCGGTTTCCGAGGGCTGTTTTCTCGAACGGTCG
GTGCGAGACCTGTTCTTTT
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protein sequence of EsuBft95_10a-0001

>EsuBft95_10 ID=EsuBft95_10|Name=EsuBft95_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MGDEREGGKWKESAKDPEVWYNKVEDGAAWLMRKWHRQEAEASAKRQRAR
EAEAESTAISGPKGKRVGEAAVGGKNRRPGTAVEASRAAEAALVANYVPG
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mRNA from alignment at Scaffold_129:245249..246017-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft95_10a-0001 ID=EsuBft95_10a-0001|Name=EsuBft95_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=769bp|location=Sequence derived from alignment at Scaffold_129:245249..246017- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGGAGACGAA
AGGGAAGGGGGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTA
CAACAAGGTCGAGGATGGGGCGGCATGGCTCATGAGGAAATGGCACCGGC
AGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCA
GAGAGTACGGCCATCTCAGGACCGAAGGGAAAGAGAGTTGGGGAAGCGGC
GGTGGGGGGGAAGAACCGGCGACCGGGCACGGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGC
GCCCTATTTCCCTCCCTGCTGTATGCTTTACTCCTTTATGCATGTCCTTT
GTATTGCCTCCGGCCTCTGTGCTGTGTTTCTTTTTTTCATGACCTCCCTG
CCTACTCTGTTGTGTTGGGTACTGTGATCTCGCCTTTGCTGTTGCCTTTG
TTGTTTTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTG
CTCCGTCACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGGCACGTTAC
CCTTTGATTTTTCTTTGGGCGGGTGTGGGAAGCGTCCTCCTTTATTTTTG
TTTTTGTTCTATTTTGATCGGTTTCCGAGGGCTGTTTTCTCGAACGGTCG
GTGCGAGACCTGTTCTTTT
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Coding sequence (CDS) from alignment at Scaffold_129:245249..246017-

>EsuBft95_10a-0001 ID=EsuBft95_10a-0001|Name=EsuBft95_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_129:245249..246017- (Ectocarpus subulatus male Bft15b)
ATGGGAGACGAAAGGGAAGGGGGTAAATGGAAAGAGAGCGCCAAGGACCC
GGAGGTGTGGTACAACAAGGTCGAGGATGGGGCGGCATGGCTCATGAGGA
AATGGCACCGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGG
GAAGCAGAAGCAGAGAGTACGGCCATCTCAGGACCGAAGGGAAAGAGAGT
TGGGGAAGCGGCGGTGGGGGGGAAGAACCGGCGACCGGGCACGGCTGTAG
AAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGC
TGA
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