EsuBft1111_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1111_2a-0001
Unique NameEsuBft1111_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:775718..776518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1111_2
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length80
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_2aEsuBft1111_2aEctocarpus subulatus male Bft15bgeneScaffold_389 775718..776518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_2a-0001-exonEsuBft1111_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 775718..776518 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_2a-0001-exonagat-three_prime_utr-1062Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 775718..776338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_2a-0001-cdsEsuBft1111_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 776339..776518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_2a-0001EsuBft1111_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 776339..776518 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1111_2a-0001 ID=EsuBft1111_2a-0001|Name=EsuBft1111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=801bp|location=Sequence derived from alignment at Scaffold_389:775718..776518- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGGGGAAACCATTTTTTTCTTCTCGCCGCCGCGACGGTAGTGTG
TAGGCCAGCATCGCAGCTGCAGCAGTCGAAGACACAGACCACCGCAAGGG
ATTTCGAGGTAATCCGCGGCTCATTCTCCGGCCCTATCTACTACCGCTGT
TCGTCAGCCTCTGCTCACCTTCGCAGTTGAATTCTGTACGAAGGTAGCCG
CTCGGAGGAGATATACCCTGGCAAGAGACTGCTGTGCCATCGCAATCCGT
CGTCAATATCACCTCACAGGGGGTTTCAGGCCCTTGTGAATTCCAAGCCC
CGAGCTAAACAAGATGCCTTGGAGCCATGGCCGCAGCAAACGGTCGTCGA
ATCTGACACCTCTGAGCACCAATATGACGATGTCATGTCTATCCCTATGT
CCGCCGCGAGCGAGAGAGAGGTGGCGACGCAAAGCAAGCTAAGTGACTCT
TTGCCCAGTTTTGGTAAAAATGGTTGAGGCGGTTTACTGACGTATGAAAC
TGTCGACAGCTACTGTAGCTGTAGACCCTCGGCCCTCGACGGCCTACCCC
GAGGACGCAGGGAACCGTTTTTACCGATGCCGAGGATGCGATTCTGCTGC
AACGTGTAGGCTGAACCTCTTACCCCCGCCCTAACCCTTGCTGCACGTCT
GTGCCGTCTACTGCATGTCTTGCATCAGACGGCAGGGCAGGAGTGCCCGA
ATGCCGGTAACATCGAACACCGCCTGTGCGGCCAGGGGAAGCACTACGGC
GGGAGAGAGTCGCCGGGAACGCGCACCTCAAAAACCCAGATAGTTTTCAG
A
back to top

protein sequence of EsuBft1111_2a-0001

>EsuBft1111_2 ID=EsuBft1111_2|Name=EsuBft1111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MLRGNHFFLLAAATVVCRPASQLQQSKTQTTARDFEVIRGSFSGPIYYRC
SSASAHLRS
back to top

mRNA from alignment at Scaffold_389:775718..776518-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1111_2a-0001 ID=EsuBft1111_2a-0001|Name=EsuBft1111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=801bp|location=Sequence derived from alignment at Scaffold_389:775718..776518- (Ectocarpus subulatus male Bft15b)
ATGCTGCGGGGAAACCATTTTTTTCTTCTCGCCGCCGCGACGGTAGTGTG
TAGGCCAGCATCGCAGCTGCAGCAGTCGAAGACACAGACCACCGCAAGGG
ATTTCGAGGTAATCCGCGGCTCATTCTCCGGCCCTATCTACTACCGCTGT
TCGTCAGCCTCTGCTCACCTTCGCAGTTGAATTCTGTACGAAGGTAGCCG
CTCGGAGGAGATATACCCTGGCAAGAGACTGCTGTGCCATCGCAATCCGT
CGTCAATATCACCTCACAGGGGGTTTCAGGCCCTTGTGAATTCCAAGCCC
CGAGCTAAACAAGATGCCTTGGAGCCATGGCCGCAGCAAACGGTCGTCGA
ATCTGACACCTCTGAGCACCAATATGACGATGTCATGTCTATCCCTATGT
CCGCCGCGAGCGAGAGAGAGGTGGCGACGCAAAGCAAGCTAAGTGACTCT
TTGCCCAGTTTTGGTAAAAATGGTTGAGGCGGTTTACTGACGTATGAAAC
TGTCGACAGCTACTGTAGCTGTAGACCCTCGGCCCTCGACGGCCTACCCC
GAGGACGCAGGGAACCGTTTTTACCGATGCCGAGGATGCGATTCTGCTGC
AACGTGTAGGCTGAACCTCTTACCCCCGCCCTAACCCTTGCTGCACGTCT
GTGCCGTCTACTGCATGTCTTGCATCAGACGGCAGGGCAGGAGTGCCCGA
ATGCCGGTAACATCGAACACCGCCTGTGCGGCCAGGGGAAGCACTACGGC
GGGAGAGAGTCGCCGGGAACGCGCACCTCAAAAACCCAGATAGTTTTCAG
A
back to top

Coding sequence (CDS) from alignment at Scaffold_389:775718..776518-

>EsuBft1111_2a-0001 ID=EsuBft1111_2a-0001|Name=EsuBft1111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_389:775718..776518- (Ectocarpus subulatus male Bft15b)
ATGCTGCGGGGAAACCATTTTTTTCTTCTCGCCGCCGCGACGGTAGTGTG
TAGGCCAGCATCGCAGCTGCAGCAGTCGAAGACACAGACCACCGCAAGGG
ATTTCGAGGTAATCCGCGGCTCATTCTCCGGCCCTATCTACTACCGCTGT
TCGTCAGCCTCTGCTCACCTTCGCAGTTGA
back to top