EsuBft641_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft641_9a-0001
Unique NameEsuBft641_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:360582..362374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft641_9
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length121
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft641_9aEsuBft641_9aEctocarpus subulatus male Bft15bgeneScaffold_389 360582..362374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_9a-0001-exonagat-exon-65590Ectocarpus subulatus male Bft15bexonScaffold_389 360582..360734 +
EsuBft641_9a-0001-exonagat-exon-65589Ectocarpus subulatus male Bft15bexonScaffold_389 361061..361290 +
EsuBft641_9a-0001-exonEsuBft641_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 361542..362374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_9a-0001-cdsEsuBft641_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 360582..360734 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_9a-0001-exonagat-three_prime_utr-19608Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 361546..362374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_9a-0001EsuBft641_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 360582..361545 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft641_9a-0001 ID=EsuBft641_9a-0001|Name=EsuBft641_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1216bp|location=Sequence derived from alignment at Scaffold_389:360582..362374+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGGTTACGGAGATCGGCGACGGGGCTGAGGATCCTGCGAAGATC
GGCGGGGAAGCGGGCGGCGGCGGTGCGGTGGTCGCTGGTGCAGGCGGGAT
GTAGGTGTACGTCCTTGATGGCGGGGGCGCCGGCGGTGCGACATCGGCCG
CAGGTGTACGTCCTTGATGGCGGGGGCGCCGGCGGTGCGACATCGGCCGC
AGGTACGGCGGCGGCCGGCGAGGGCGCCGCGGTGACCGAAGAACCCCTCC
CGATACCCGGCACCGGCGCCGGCGCCCCTGCCCGACGGTTGACCCACACG
ACGTTGTTGGTGAGGGCGAGGCGACCGGTGTCAGCGCGAAGAACGACGGC
GGTAGACGTCGAGTGGTTGTTGGCGCCGTGCAGGTAGAGGCACCGCGCGG
ATTGGACGTCCGCCTTGGTGGCCCGCTTCTCGCGCATCATCCCCTCCTGG
AAAAAAGGGACGACGGTGAGAGGCGGCCTCCGGCCGAACAACGCCTCAAA
GGGAGACATCCAGCCCAGGTTGGCCTTCGTCGCGGAGCGGTTGAAGCAGG
CGGATGCCCACAGCGCCGACGCGAGCCACAGGCGATATCCGTTGACGCCG
ATGTTGAGGATGAAGGAGGGGTCGACGTGGCCTACGGCGAGGATGTGGCG
GCGCACGGCGTGCCCCCCCATCATGGCGCCATATGGCGCTCTCGACCACC
GCGTTTTGCTTGGGGATGTCGGGGGCGGTGTACTCGCGCCGAATGCCAGC
AGCGTCGCAGAACGAGGTGAACGCGGAGCCGGAGAACTCGCCGTCGTTGT
CCATGCGGAAACACCCCGGAGTGCCCATGCCGTTCATGTCGGCGAGGAAC
CGCTGCACGAAGTTCAGGGTGTCGCTCTTTGCCCACATCCCGTACCCCCG
TTGCCACCGCGATGCGCTGTCCACGAACATGATCAGGTACCGGGAGCCGT
CCAGCGCGTCAGAGAACGGACCCGTGAGGTCGATGTGGACTTTGCCGAAC
GGTACCGCCGCGCGGGTGCCACGCCGCGGCACCGGTGCCCGCCTGCCCTT
CGCCTCCACGCAGCCCACACACGGCTGCATCTCCCCCACCAGTCGTACGC
CCTGCTGCTTGGCCATTTCACGCATCAAGAGTTCGTTTATATGGCCGGTG
GAGGCATGGAACAAATTCACGTCAAAGGTCGGCGTGGATTTTCCTTCCGA
AAATAGGGAAGCACCG
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protein sequence of EsuBft641_9a-0001

>EsuBft641_9 ID=EsuBft641_9|Name=EsuBft641_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MMGLRRSATGLRILRRSAGKRAAAVRWSLVQAGCRCTSLMAGAPAVRHRP
QVYVLDGGGAGGATSAAGTAAAGEGAAVTEEPLPIPGTGAGAPARRLTHT
TLLVRARRPVSARRTTAVDVEWLLAPCR
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mRNA from alignment at Scaffold_389:360582..362374+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft641_9a-0001 ID=EsuBft641_9a-0001|Name=EsuBft641_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1793bp|location=Sequence derived from alignment at Scaffold_389:360582..362374+ (Ectocarpus subulatus male Bft15b)
ATGATGGGGTTACGGAGATCGGCGACGGGGCTGAGGATCCTGCGAAGATC
GGCGGGGAAGCGGGCGGCGGCGGTGCGGTGGTCGCTGGTGCAGGCGGGAT
GTAGGTGTACGTCCTTGATGGCGGGGGCGCCGGCGGTGCGACATCGGCCG
CAGGTACGGCGGCGGCCGGCGAGGGCGCCGCGGTGACCGAAGAACCCCTC
CCGATACCCGGCACCGGCGCCGGCGCCCCTGCCCGACGGTTGACCCACAC
GACGTTGTTGGTGAGGGCGAGGCGACCGGTGTCAGCGCGAAGAACGACGG
CGGTAGACGTCGAGTGGTTGTTGGCGCCGTGCAGGTAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGGTG
CGGTGGTCGCTGGTGCAGGCGGGATGTAGGTGTACGTCCTTGATGGCGGG
GGCGCCGGCGGTGCGACATCGGCCGCAGGTACGGCGGCGGCCGGCGAGGG
CGCCGCGGTGACCGAAGAACCCCTCCCGATACCCGGCACCGGCGCCGGCG
CCCCTGCCCGACGGTTGACCCACACGACGTTGTTGGTGAGGGCGAGGCGA
CCGGTGTCAGCGCGAAGAACGACGGCGGTAGACGTCGAGTGGTTGTTGGC
GCCGTGCAGGTAGAGGCACCGCGCGNGTAGGTGTACGTCCTTGATGGCGG
GGGCGCCGGCGGTGCGACATCGGCCGCAGGTACGGCGGCGGCCGGCGAGG
GCGCCGCGGTGACCGAAGAACCCCTCCCGATACCCGGCACCGGCGCCGGC
GCCCCTGCCCGGCGGTTGACCCACACGACGTTGTTGGTGAGGGCGAGGCG
ACCGGTGTCAGCGCGAAGAACAACGGCGGTAGTCGTTGAGTGGTTCGTGC
CGCCGTGCAGGTAGAGGCACCGCGCGGATTGGACGTCCGCCTTGGTGGCC
CGCTTCTCGCGCATCATCCCCTCCTGGAAAAAAGGGACGACGGTGAGAGG
CGGCCTCCGGCCGAACAACGCCTCAAAGGGAGACATCCAGCCCAGGTTGG
CCTTCGTCGCGGAGCGGTTGAAGCAGGCGGATGCCCACAGCGCCGACGCG
AGCCACAGGCGATATCCGTTGACGCCGATGTTGAGGATGAAGGAGGGGTC
GACGTGGCCTACGGCGAGGATGTGGCGGCGCACGGCGTGCCCCCCCATCA
TGGCGCCATATGGCGCTCTCGACCACCGCGTTTTGCTTGGGGATGTCGGG
GGCGGTGTACTCGCGCCGAATGCCAGCAGCGTCGCAGAACGAGGTGAACG
CGGAGCCGGAGAACTCGCCGTCGTTGTCCATGCGGAAACACCCCGGAGTG
CCCATGCCGTTCATGTCGGCGAGGAACCGCTGCACGAAGTTCAGGGTGTC
GCTCTTTGCCCACATCCCGTACCCCCGTTGCCACCGCGATGCGCTGTCCA
CGAACATGATCAGGTACCGGGAGCCGTCCAGCGCGTCAGAGAACGGACCC
GTGAGGTCGATGTGGACTTTGCCGAACGGTACCGCCGCGCGGGTGCCACG
CCGCGGCACCGGTGCCCGCCTGCCCTTCGCCTCCACGCAGCCCACACACG
GCTGCATCTCCCCCACCAGTCGTACGCCCTGCTGCTTGGCCATTTCACGC
ATCAAGAGTTCGTTTATATGGCCGGTGGAGGCATGGAACAAATTCACGTC
AAAGGTCGGCGTGGATTTTCCTTCCGAAAATAGGGAAGCACCG
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Coding sequence (CDS) from alignment at Scaffold_389:360582..362374+

>EsuBft641_9a-0001 ID=EsuBft641_9a-0001|Name=EsuBft641_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_389:360582..362374+ (Ectocarpus subulatus male Bft15b)
ATGATGGGGTTACGGAGATCGGCGACGGGGCTGAGGATCCTGCGAAGATC
GGCGGGGAAGCGGGCGGCGGCGGTGCGGTGGTCGCTGGTGCAGGCGGGAT
GTAGGTGTACGTCCTTGATGGCGGGGGCGCCGGCGGTGCGACATCGGCCG
CAGGTGTACGTCCTTGATGGCGGGGGCGCCGGCGGTGCGACATCGGCCGC
AGGTACGGCGGCGGCCGGCGAGGGCGCCGCGGTGACCGAAGAACCCCTCC
CGATACCCGGCACCGGCGCCGGCGCCCCTGCCCGACGGTTGACCCACACG
ACGTTGTTGGTGAGGGCGAGGCGACCGGTGTCAGCGCGAAGAACGACGGC
GGTAGACGTCGAGTGGTTGTTGGCGCCGTGCAGGTAG
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