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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 13735.ENSPSIP00000006800 |
| ProteomeId | EsuBft95_3 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 33208|Metazoa |
| Length | 2328 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.65e-31 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria,48700@7711|Chordata,4949I@7742|Vertebrata |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | pogo transposable element with KRAB domain |
| COG category | BD |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft95_3a-0001 ID=EsuBft95_3a-0001|Name=EsuBft95_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2328bp|location=Sequence derived from alignment at Scaffold_129:148469..152147- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGCACTCCAACAACATGAACGTGCAGGCACAGCAGAATGCAGCCGC AAGTACCTCCGCTCCTTCGACAACTGCTTCGACTGCAGCAGCGCAGGCGC CAAAGGAGATCACCTCCTTCTTTGGGCCCGCGCACATCTCTTCTACGCAA GAGGCTCCTACTCCTGCTCCTGCTGATCTCACAGCAGCACGAGCTGGAAC AGCAACAGGCGTCAACATGACAGCCTCCGCATCGCCTCAGCAGCAGCCAG TTGCTCTCTTGCTCTCAGCAGCACGTATGAACACCGCACCAGACGAGTCA ACACACACCAGCCAAGCATCTCAGCTTGTGGTGGACGTGGTGGACCAGGA ACCCAGCACTTCCGTCGGCAGGAAGAACGATCCAATCGCCTATTTTAACC ACACGTTCCCGGGTGAGCGGCACACCCGGAGCGCCTCCATCAGGAGCAGC ACCGGCGCCAGCTCCGGCATCGGCGCCAGCTCCACCATCGGCGCCAGCTC CAGCACCGGCGCCAGCAACGCCGGCAGCGGGAGGAACGCCGGTGGCCAAC GATGCTGCATCCGGCGACGTGATGTTTCCCGGAGAGAGAGAGAGAGTGGG GAGATGGGCTCGGCGGCGTTCTCTTTGAGGAAGATCAAGGGGGCGCAAGG ACCGAACGGGACCGTTGGGATAACCTACGCGACCAGGATCCTGAAGGTTC CCGACAAGGCGACGTTGGCGGCGCGGGTCAAAAACGTCGCCAAGTACGAA GCCGCGCTTGCGGAGCAGGACACGTTCAAGGGAGGAGGGAAGCGCAAGAA GAAAGCCAGGAACCGCTTGACGCTGAACGTCGGACGTATCAGGACGCACA CGGCGGCCGAGCTTGAGGCCGTGGACTGGATCAACGAGCTGCGTTCTGAC GGCATATCCGTCCGTGTTTCGACGAAAAAGATGATCAAGAACAAGGCCGT CGAACTCAATCCCAACTTCTTCGGGGAGAGGCCGGCGCCACCCGATCTTC AGGGCTCCCTCAAGTACAACAACAGGCAGAACCTGTGGTGCAGAAGGTTT CTCATGGTCTACCGCTTCTCTGTGCGAGCTGTCACCCGGCAAGGCCAGAA ACTTCCTTCTGGCTGGCCTTTGGTCGCCATGCAGGCGATCAAGGAGTGGA GGAGGCTGGAGTACGACGTGCCTTCCGCGCTCGAACTTGCGGACGGAGTC GAGTGCCTGGGGGTTGTGGCAGGGGCGGGAGGCAGCGCGAGCGGGAGCGG GGGTGGGAGTGGCGCTGGTGTTCTTTCGGGGCCGCGTCTCAAGTTCGCCT TGGCGCAGATCGGCAACATGGACGAAACCCCTACGTGGTTCGAGAGCCTG GGGAAGGACACTGTGAACGCCACGGGCGAGAAGGAGATTGCCGTCAAAGC CGGCGGCAAGGAGAAGATGCGCATCACTTCGGTCCAAACGGTGTTCGCCG AACGCAGCAAGCTGCCGCCCCTCCTCATCTTCAAGGGCCAGCCCACTCCG AAGGGAAAGTCCCCCGCCGCCGACAGCATCGAGCGCGACTTCAGGAACTA CAAGGACCGGAAGGGCTGCGCGTACCCGCGAGGTATGGCCTACGTCGTGG ACCCCAAGGGATGGCACTCCCAGCGGGTGTTCGACGACGTGTGGGTGCCG CAGGTGTGGAACCGGCGCCCGGGGCGGCAGGGCCGCCTGGGCGGCTACCG TCAGCCCGGCACGCTTCTGGCGTGGGACGACTACATTGTCCACAAGACAG ACGCGTCGACCAAGGCGATGGAGGAGTCCAACACGACGCTGTTCCCCATC CCGGGAGGCCTGACTCCAAAGCTCCAGCCGTGCGATGGCCTGGCGATGGA GGAGTCCAACACGACGCTGTTCCCCATCCCGGGAGGCCTGACTCCAAAGC TCCAGCCGTGCGATGGCCTGGTCAACAAGATCTTCAAGGCAAACATGTCC AGGCTGTACGACGACCACATGGCTTCCAAGGACGTCACGCGCGACGACCG CGGCTACCCGAAGCCCCCTTCGCGGGGTTTGGTCGCACAGTGGGTCAAGA AGGCGAGGGATGCCTTGACCGCGGATGAAATCCGCTCGAGCTGGAGGAAG GCTGGCCTGCTGCTGCCCTTCGACGGGTCGGAAGACGAGGCCTGGGCCAA CAAGGAGCTCGGCGTCAACGCCAAGGGGGAGCCCATCGGCGCGCCATCGG ACGCTGCGGACAAGGCTGACTCGTCGTCCGGAGGCGAGAACTTGCTGGAG GTGTTGGACATCGACGATGACGACGACACGGGCGGTGTGGTGGTGGACGT GAGCGACGACGAGGGCGAGGAGCTGTGA back to topprotein sequence of EsuBft95_3a-0001 >EsuBft95_3 ID=EsuBft95_3|Name=EsuBft95_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=775bp
MEHSNNMNVQAQQNAAASTSAPSTTASTAAAQAPKEITSFFGPAHISSTQ EAPTPAPADLTAARAGTATGVNMTASASPQQQPVALLLSAARMNTAPDES THTSQASQLVVDVVDQEPSTSVGRKNDPIAYFNHTFPGERHTRSASIRSS TGASSGIGASSTIGASSSTGASNAGSGRNAGGQRCCIRRRDVSRRERESG EMGSAAFSLRKIKGAQGPNGTVGITYATRILKVPDKATLAARVKNVAKYE AALAEQDTFKGGGKRKKKARNRLTLNVGRIRTHTAAELEAVDWINELRSD GISVRVSTKKMIKNKAVELNPNFFGERPAPPDLQGSLKYNNRQNLWCRRF LMVYRFSVRAVTRQGQKLPSGWPLVAMQAIKEWRRLEYDVPSALELADGV ECLGVVAGAGGSASGSGGGSGAGVLSGPRLKFALAQIGNMDETPTWFESL GKDTVNATGEKEIAVKAGGKEKMRITSVQTVFAERSKLPPLLIFKGQPTP KGKSPAADSIERDFRNYKDRKGCAYPRGMAYVVDPKGWHSQRVFDDVWVP QVWNRRPGRQGRLGGYRQPGTLLAWDDYIVHKTDASTKAMEESNTTLFPI PGGLTPKLQPCDGLAMEESNTTLFPIPGGLTPKLQPCDGLVNKIFKANMS RLYDDHMASKDVTRDDRGYPKPPSRGLVAQWVKKARDALTADEIRSSWRK AGLLLPFDGSEDEAWANKELGVNAKGEPIGAPSDAADKADSSSGGENLLE VLDIDDDDDTGGVVVDVSDDEGEEL back to topmRNA from alignment at Scaffold_129:148469..152147- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft95_3a-0001 ID=EsuBft95_3a-0001|Name=EsuBft95_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3679bp|location=Sequence derived from alignment at Scaffold_129:148469..152147- (Ectocarpus subulatus male Bft15b) ATGGAGCACTCCAACAACATGAACGTGCAGGCACAGCAGAATGCAGCCGC
AAGTACCTCCGCTCCTTCGACAACTGCTTCGACTGCAGCAGCGCAGGCGC
CAAAGGAGATCACCTCCTTCTTTGGGCCCGCGCACATCTCTTCTACGCAA
GAGGCTCCTACTCCTGCTCCTGCTGATCTCACAGCAGCACGAGCTGGAAC
AGCAACAGGCGTCAACATGACAGCCTCCGCATCGCCTCAGCAGCAGCCAG
TTGCTCTCTTGCTCTCAGCAGCACGTATGAACACCGCACCAGACGAGTCA
ACACACACCAGCCAAGCATCTCAGCTTGTGGTGGACGTGGTGGACCAGGA
ACCCAGCACTTCCGTCGGCAGGAAGAACGATCCAAGTGAGTGTACATGTG
CTTCGTGGATTTGGCGTAGTATCAATCCGCGTGTGGTCTCGAAACGTGCA
ATTGTGGGTTGGCTTTTGCACCACCCGCACACTCCAGGGTTCTTGTAATT
TTCTTTTTTTTTTTGCGCCACCCGTTCCCAGGACACATTTTGAGGGTTTC
TTTCGTGTGCAGTCGCCTATTTTAACCACACGTTCCCGGTACGGAATTTG
TAAGTTGTTTTGTGCGCATGTGGCTTTTTTTTTTTCACACGCTCGCGGAA
ATTGATTCTGTCGTTGCGTGCCCATTTCGTAATTCTTTCGTTCGCAGTGT
TTTTATGGCCATTCGTCGGTATTGTACACACTTTAAAGCTGCTTTTAGTG
TATGATTATTGTTCCTGCAATGCCGCAGTGTGTCGTGGCAATGCCGCAGC
TTTCTTTGCAGCTGGCATCTCCATACCACCTTGATTAATTTTCAATGGTA
CTGTTTTGCGCATTTTTTGTTCACCCTAAAGTGTACTTTCAACCGCCAAA
CGTTTTTTGGAAAATTGAACACGGTGTAAGTCAATCAGCATACTCTTTGT
GAAGAAACAGCTTTGGTTTCCGCCCACACGACACACGTTTCCGTGCGTTC
CAACATTGACCGCTTCGTGCCTTCCCGCACATATTTGTCTCCGTTTGTCT
TCGGTAGGGTGAGCGGCACACCCGGAGCGCCTCCATCAGGAGCAGCACCG
GCGCCAGCTCCGGCATCGGCGCCAGCTCCACCATCGGCGCCAGCTCCAGC
ACCGGCGCCAGCAACGCCGGCAGCGGGAGGAACGCCGGTGGCCAACGATG
CTGCATCCGGCGACGTGATGTTTCCCGGAGAGAGAGAGAGAGTGGGGAGA
TGGGCTCGGCGGCGTTCTCTTTGGTACGCCGGCACAGAACAAGGGCAAGA
GGAACAAAGGGCGGCTGGAGTTGGAGCCGCCGAACTTCCCGATCCCCTAG
CTTGGTGGTGGAAGCCAAAGGAAGCGCTACCCTCTGAAGCTTAAGGTGGA
TGCGGTGAGGTACTCACAGAGGAAGATCAAGGGGGCGCAAGGACCGAACG
GGACCGTTNGGAGAGACAGAGTGGGGAGATGGGCTCGGCGGCGTTCTCTT
TGGTACGCCGGCACAGAACAAGGGCAAGAGGAACAAAGGGCGGCTGGAGT
TGGAGCCGCCGAACTTCCCGATCCCCTAGCTTGGTGGTGGAAGCCAAAGG
AAGCGCTACCCTCTGAAGCTTAAGGTGGATGCGGTGAGGTACTCACAGAG
GAAGATCAAGGGGGCGCAAGGACCGAACGGGACCGTTGGGATAACCTACG
CGACCAGGATCCTGAAGGTTCCCGACAAGGCGACGTTGGCGGCGCGGGTC
AAAAACGTCGCCAAGTACGAAGCCGCGCTTGCGGAGCAGGACACGTTCAA
GGGAGGAGGGAAGCGCAAGAAGAAAGCCAGGAACCGCTTGACGCTGAACG
TCGGACGTATCAGGACGCACACGGCGGCCGAGCTTGAGGCCGTGGACTGG
ATCAACGAGCTGCGTTCTGACGGCATATCCGTCCGTGTTTCGACGAAAAA
GATGATCAAGAACAAGGCCGTCGAACTCAATCCCAACTTCTTCGGGGAGA
GGCCGGCGCCACCCGATCTTCAGGGCTCCCTCAAGTACAACAACAGGCAG
AACCTGTGGTGCAGAAGGTTTCTCATGGTCTACCGCTTCTCTGTGCGAGC
TGTCACCCGGCAAGGCCAGAAACTTCCTTCTGGCTGGCCTTTGGTCGCCA
TGCAGGCGATCAAGGAGTGGAGGAGGCTGGAGTACGACGTGCCTTCCGCG
CTCGAACTTGCGGACGGAGTCGAGTGCCTGGGGGTTGTGGCAGGGGCGGG
AGGCAGCGCGAGCGGGAGCGGGGGTGGGAGTGGCGCTGGTGTTCTTTCGG
GGCCGCGTCTCAAGTTCGCCTTGGCGCAGATCGGCAACATGGACGAAACC
CCTACGTGGTTCGAGAGCCTGGGGAAGGACACTGTGAACGTGAGCATTCG
TTTTGCCCAAGTTTTTGCTCGTACTGCGTTAGATGTAGCGACCCTGTCCT
TTCCTCCGTGAACGCTTCTTTTAGGCCACCCTTTTTTTTTTTTTTGTTAG
GATCTATCTTCATGTAGGTAGTTTGCGTCTTTTCGCTTCTTTCGCTTTCT
GTTCTCCGATTTTGGTCATGTTTTTTTGCAACCATTGCTGCCACTTTCCG
GATCTTGACAACCAAGAGTCGTTTCCACGCACCCCACGTTCATGTCGGTT
TTCGCTGTTCTACCAAATCCCGAAGGCCACGGGCGAGAAGGAGATTGCCG
TCAAAGCCGGCGGCAAGGAGAAGATGCGCATCACTTCGGTCCAAACGGTG
TTCGCCGAACGCAGCAAGCTGCCGCCCCTCCTCATCTTCAAGGGCCAGCC
CACTCCGAAGGGAAAGTCCCCCGCCGCCGACAGCATCGAGCGCGACTTCA
GGAACTACAAGGACCGGAAGGGCTGCGCGTACCCGCGAGGTATGGCCTAC
GTCGTGGACCCCAAGGGATGGCACTCCCAGCGGGTGTTCGACGACGTGTG
GGTGCCGCAGGTGTGGAACCGGCGCCCGGGGCGGCAGGGCCGCCTGGGCG
GCTACCGTCAGCCCGGCACGCTTCTGGCGTGGGACGACTACATTGTCCAC
AAGACAGACGCGTCGACCAAGGCGATGGAGGAGTCCAACACGACGCTGTT
CCCCATCCCGGGAGGCCTGACTCCAAAGCTCCAGCCGTGCGATGGCCTGG
TCAACAAGATCTTCAAGGCAAACATGTCNACGCGTCTACCAAGGCGATGG
AGGAGTCCAACACGACGCTGTTCCCCATCCCGGGAGGCCTGACTCCAAAG
CTCCAGCCGTGCGATGGCCTGGTCAACAAGATCTTCAAGGCAAACATGTC
CAGGCTGTACGACGACCACATGGCTTCCAAGGACGTCACGCGCGACGACC
GCGGCTACCCGAAGCCCCCTTCGCGGGGTTTGGTCGCACAGTGGGTCAAG
AAGGCGAGGGATGCCTTGACCGCGGATGAAATCCGCTCGAGCTGGAGGAA
GGCTGGCCTGCTGCTGCCCTTCGACGGGTCGGAAGACGAGGCCTGGGCCA
ACAAGGAGCTCGGCGTCAACGCCAAGGGGGAGCCCATCGGCGCGCCATCG
GACGCTGCGGACAAGGCTGACTCGTCGTCCGGAGGCGAGAACTTGCTGGA
GGTGTTGGACATCGACGATGACGACGACACGGGCGGTGTGGTGGTGGACG
TGAGCGACGACGAGGGCGAGGAGCTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_129:148469..152147- >EsuBft95_3a-0001 ID=EsuBft95_3a-0001|Name=EsuBft95_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2328bp|location=Sequence derived from alignment at Scaffold_129:148469..152147- (Ectocarpus subulatus male Bft15b) ATGGAGCACTCCAACAACATGAACGTGCAGGCACAGCAGAATGCAGCCGC AAGTACCTCCGCTCCTTCGACAACTGCTTCGACTGCAGCAGCGCAGGCGC CAAAGGAGATCACCTCCTTCTTTGGGCCCGCGCACATCTCTTCTACGCAA GAGGCTCCTACTCCTGCTCCTGCTGATCTCACAGCAGCACGAGCTGGAAC AGCAACAGGCGTCAACATGACAGCCTCCGCATCGCCTCAGCAGCAGCCAG TTGCTCTCTTGCTCTCAGCAGCACGTATGAACACCGCACCAGACGAGTCA ACACACACCAGCCAAGCATCTCAGCTTGTGGTGGACGTGGTGGACCAGGA ACCCAGCACTTCCGTCGGCAGGAAGAACGATCCAATCGCCTATTTTAACC ACACGTTCCCGGGTGAGCGGCACACCCGGAGCGCCTCCATCAGGAGCAGC ACCGGCGCCAGCTCCGGCATCGGCGCCAGCTCCACCATCGGCGCCAGCTC CAGCACCGGCGCCAGCAACGCCGGCAGCGGGAGGAACGCCGGTGGCCAAC GATGCTGCATCCGGCGACGTGATGTTTCCCGGAGAGAGAGAGAGAGTGGG GAGATGGGCTCGGCGGCGTTCTCTTTGAGGAAGATCAAGGGGGCGCAAGG ACCGAACGGGACCGTTGGGATAACCTACGCGACCAGGATCCTGAAGGTTC CCGACAAGGCGACGTTGGCGGCGCGGGTCAAAAACGTCGCCAAGTACGAA GCCGCGCTTGCGGAGCAGGACACGTTCAAGGGAGGAGGGAAGCGCAAGAA GAAAGCCAGGAACCGCTTGACGCTGAACGTCGGACGTATCAGGACGCACA CGGCGGCCGAGCTTGAGGCCGTGGACTGGATCAACGAGCTGCGTTCTGAC GGCATATCCGTCCGTGTTTCGACGAAAAAGATGATCAAGAACAAGGCCGT CGAACTCAATCCCAACTTCTTCGGGGAGAGGCCGGCGCCACCCGATCTTC AGGGCTCCCTCAAGTACAACAACAGGCAGAACCTGTGGTGCAGAAGGTTT CTCATGGTCTACCGCTTCTCTGTGCGAGCTGTCACCCGGCAAGGCCAGAA ACTTCCTTCTGGCTGGCCTTTGGTCGCCATGCAGGCGATCAAGGAGTGGA GGAGGCTGGAGTACGACGTGCCTTCCGCGCTCGAACTTGCGGACGGAGTC GAGTGCCTGGGGGTTGTGGCAGGGGCGGGAGGCAGCGCGAGCGGGAGCGG GGGTGGGAGTGGCGCTGGTGTTCTTTCGGGGCCGCGTCTCAAGTTCGCCT TGGCGCAGATCGGCAACATGGACGAAACCCCTACGTGGTTCGAGAGCCTG GGGAAGGACACTGTGAACGCCACGGGCGAGAAGGAGATTGCCGTCAAAGC CGGCGGCAAGGAGAAGATGCGCATCACTTCGGTCCAAACGGTGTTCGCCG AACGCAGCAAGCTGCCGCCCCTCCTCATCTTCAAGGGCCAGCCCACTCCG AAGGGAAAGTCCCCCGCCGCCGACAGCATCGAGCGCGACTTCAGGAACTA CAAGGACCGGAAGGGCTGCGCGTACCCGCGAGGTATGGCCTACGTCGTGG ACCCCAAGGGATGGCACTCCCAGCGGGTGTTCGACGACGTGTGGGTGCCG CAGGTGTGGAACCGGCGCCCGGGGCGGCAGGGCCGCCTGGGCGGCTACCG TCAGCCCGGCACGCTTCTGGCGTGGGACGACTACATTGTCCACAAGACAG ACGCGTCGACCAAGGCGATGGAGGAGTCCAACACGACGCTGTTCCCCATC CCGGGAGGCCTGACTCCAAAGCTCCAGCCGTGCGATGGCCTGGCGATGGA GGAGTCCAACACGACGCTGTTCCCCATCCCGGGAGGCCTGACTCCAAAGC TCCAGCCGTGCGATGGCCTGGTCAACAAGATCTTCAAGGCAAACATGTCC AGGCTGTACGACGACCACATGGCTTCCAAGGACGTCACGCGCGACGACCG CGGCTACCCGAAGCCCCCTTCGCGGGGTTTGGTCGCACAGTGGGTCAAGA AGGCGAGGGATGCCTTGACCGCGGATGAAATCCGCTCGAGCTGGAGGAAG GCTGGCCTGCTGCTGCCCTTCGACGGGTCGGAAGACGAGGCCTGGGCCAA CAAGGAGCTCGGCGTCAACGCCAAGGGGGAGCCCATCGGCGCGCCATCGG ACGCTGCGGACAAGGCTGACTCGTCGTCCGGAGGCGAGAACTTGCTGGAG GTGTTGGACATCGACGATGACGACGACACGGGCGGTGTGGTGGTGGACGT GAGCGACGACGAGGGCGAGGAGCTGTGA back to top
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