EsuBft2188_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2188_2a-0001
Unique NameEsuBft2188_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:138435..138893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGL2
ProteomeIdEsuBft2188_2
Protein domainsIPR010979
Protein domainsPTHR10871
Protein domainsIPR018269
Protein domainsG3DSA
Protein domainsIPR001892
Protein domainsIPR027437
Ownerapollo_admin@sb-roscoff.fr
Note40s ribosomal protein s18 os:arabidopsis thaliana gn:rps18a pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length459
Hectar predicted targeting categoryother localisation
Evalue7.95e-104
EggNOG OGsCOG0099@1|root,KOG3311@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameRPS18
KEGG koko:K02964
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022613,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0051726
GO0000184
GO0004571
GO0005774
GO0004553
GO0070062
GO0009506
GO0006614
GO0005622
GO0006415
GO0006414
GO0006413
GO0019083
GO0005515
GO0055085
GO0001510
GO0003735
GO0007275
GO0042254
GO0022627
GO0019843
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2188_2aEsuBft2188_2aEctocarpus subulatus male Bft15bgeneScaffold_129 138435..138893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2188_2a-0001-exonEsuBft2188_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 138435..138893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2188_2a-0001-cdsEsuBft2188_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 138435..138893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2188_2a-0001EsuBft2188_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 138435..138893 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2188_2a-0001 ID=EsuBft2188_2a-0001|Name=EsuBft2188_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=459bp|location=Sequence derived from alignment at Scaffold_129:138435..138893+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCGTTATCTCGCCCGAGTTCCAGCACATCCTTCGTATCCTCAA
CACCAACATCGATGGCCGCCGCAAGGTGCAGTACTCGCTGACCTCCATCA
GGGGAGTGGGTCGCCGTTTTGCCAACCTTATCTGCAAGAAGGCTGAGGTT
GACCCCAACAAGCGGGCCGGAGAGATGACCGCTGACGAGATCGAGAAGCT
CGTGGCGATCATCCAGAATCCCCGCCAGTTCAAGATCCCTGACTGGTTCC
TCAATAGGCAAAAGGACTGGAAGACCGGCAAGACCACCCAGATCTCGTCC
CAGACCATCGACCAGAAGCTTCGAGATGACCTTGAGCGGCTGAAGAAGAT
CCGCTCCCACCGTGGTATCCGCCACTACTGGGGCGTGCGCGTGCGCGGCC
AGCACACCACGACCACCGGACGCCGCGGAAAGATCGTGGCGGCAGGCGGT
CGGAAGTAA
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protein sequence of EsuBft2188_2a-0001

>EsuBft2188_2 ID=EsuBft2188_2|Name=EsuBft2188_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=152bp
MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEV
DPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISS
QTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTTTTGRRGKIVAAGG
RK
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mRNA from alignment at Scaffold_129:138435..138893+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2188_2a-0001 ID=EsuBft2188_2a-0001|Name=EsuBft2188_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=459bp|location=Sequence derived from alignment at Scaffold_129:138435..138893+ (Ectocarpus subulatus male Bft15b)
ATGTCTCTCGTTATCTCGCCCGAGTTCCAGCACATCCTTCGTATCCTCAA
CACCAACATCGATGGCCGCCGCAAGGTGCAGTACTCGCTGACCTCCATCA
GGGGAGTGGGTCGCCGTTTTGCCAACCTTATCTGCAAGAAGGCTGAGGTT
GACCCCAACAAGCGGGCCGGAGAGATGACCGCTGACGAGATCGAGAAGCT
CGTGGCGATCATCCAGAATCCCCGCCAGTTCAAGATCCCTGACTGGTTCC
TCAATAGGCAAAAGGACTGGAAGACCGGCAAGACCACCCAGATCTCGTCC
CAGACCATCGACCAGAAGCTTCGAGATGACCTTGAGCGGCTGAAGAAGAT
CCGCTCCCACCGTGGTATCCGCCACTACTGGGGCGTGCGCGTGCGCGGCC
AGCACACCACGACCACCGGACGCCGCGGAAAGATCGTGGCGGCAGGCGGT
CGGAAGTAA
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Coding sequence (CDS) from alignment at Scaffold_129:138435..138893+

>EsuBft2188_2a-0001 ID=EsuBft2188_2a-0001|Name=EsuBft2188_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=459bp|location=Sequence derived from alignment at Scaffold_129:138435..138893+ (Ectocarpus subulatus male Bft15b)
ATGTCTCTCGTTATCTCGCCCGAGTTCCAGCACATCCTTCGTATCCTCAA
CACCAACATCGATGGCCGCCGCAAGGTGCAGTACTCGCTGACCTCCATCA
GGGGAGTGGGTCGCCGTTTTGCCAACCTTATCTGCAAGAAGGCTGAGGTT
GACCCCAACAAGCGGGCCGGAGAGATGACCGCTGACGAGATCGAGAAGCT
CGTGGCGATCATCCAGAATCCCCGCCAGTTCAAGATCCCTGACTGGTTCC
TCAATAGGCAAAAGGACTGGAAGACCGGCAAGACCACCCAGATCTCGTCC
CAGACCATCGACCAGAAGCTTCGAGATGACCTTGAGCGGCTGAAGAAGAT
CCGCTCCCACCGTGGTATCCGCCACTACTGGGGCGTGCGCGTGCGCGGCC
AGCACACCACGACCACCGGACGCCGCGGAAAGATCGTGGCGGCAGGCGGT
CGGAAGTAA
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