EsuBft123_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft123_10a-0001
Unique NameEsuBft123_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:312446..316477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQ34
ProteomeIdEsuBft123_10
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein FLJ43738 OS:Homo sapiens PE:2 SV:1 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1551
Hectar predicted targeting categoryother localisation
Evalue1.95e-308
EggNOG OGs28MGN@1|root,2QU03@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionUncharacterized protein FLJ43738-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft123_10aEsuBft123_10aEctocarpus subulatus male Bft15bgeneScaffold_38 312446..316477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_10a-0001EsuBft123_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 312446..316477 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_10a-0001-exonagat-exon-69250Ectocarpus subulatus male Bft15bexonScaffold_38 312446..312619 -
EsuBft123_10a-0001-exonagat-exon-69253Ectocarpus subulatus male Bft15bexonScaffold_38 312918..312984 -
EsuBft123_10a-0001-exonEsuBft123_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 313254..313269 -
EsuBft123_10a-0001-exonagat-exon-69249Ectocarpus subulatus male Bft15bexonScaffold_38 313310..313676 -
EsuBft123_10a-0001-exonagat-exon-69254Ectocarpus subulatus male Bft15bexonScaffold_38 314402..314578 -
EsuBft123_10a-0001-exonagat-exon-69252Ectocarpus subulatus male Bft15bexonScaffold_38 314976..315212 -
EsuBft123_10a-0001-exonagat-exon-69251Ectocarpus subulatus male Bft15bexonScaffold_38 315705..315927 -
EsuBft123_10a-0001-exonagat-exon-69248Ectocarpus subulatus male Bft15bexonScaffold_38 316188..316477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_10a-0001-cdsEsuBft123_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 312446..312619 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft123_10a-0001 ID=EsuBft123_10a-0001|Name=EsuBft123_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1551bp|location=Sequence derived from alignment at Scaffold_38:312446..316477- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGGTCGGCGGGCAAACACAACGCGCACGGTGTGGCTTCCTTCCA
CCTTTCGGGGCTCCTCGACCAGAGCCGCCAGCTGGTCATGGCGTACAGCA
ACAGCAAGCGAAGACTAGAAGACGACGCCAGCACAGCTACGTCGGCACTT
CCATCGGCGATCACGGATGTGGCTCCGCGGCTAAAGATGCGAGCTGAGAT
CTGCCAGAGGAAACGGCGGGAGATCCCCAGGGGAGGGGTCGAGGACTGGC
ACTTGACGGACGAGGAGCGCTTCGTGCGCTGGCCCGGCGCACTGTCGCTA
GCGAGGCCTCTCCGCACTCTGGAGGAGGGCTCAGCGGAGCGCACCGGGCC
GGCGACAGAGGAGCCCAGGCCGTTTTCGCGGGCGATTTTTGTGGTGGAAT
ACGAGGAAGGGGGGGCTCTCACAAGAGATGTTACGGCGGCGATGGACAGC
ATCAACGGCCGCGCCTTGAACAACATTCGGGGCTCGCTACGGGCGTACGT
TCTCTCTCCAGAGGAGAAGCAAGCGGCAGATGACGGCGCTCTGGACATCG
TGTGCGGTTTCATGATCATCGACGATTGCAGTCGCACGATGGTGCTAGAG
GGGTTATGTGGGCCCCAGGGAGGACTCACTGCACTCTTGAAAAAGGTGGG
GCGCACCGGGCCAAACGGGCAGGCGTATCGAGCGCTGGAGAACCCTGAAG
TGAGGTTCTCAAGGCGGATGTACACCTGTTTCGATGCTGACTTGAAGAAG
GTACGATTGCGAGACCCGCTACCAACCCTCTGCCAGAACCCAGAAATCTA
TGACCGTTCCAAGGTCAGCGCCGACTGCTTCGACGCTCTCCACTGCCTAC
GGATGCTGCGAAAGGTCGATAGGTTACGGGAGGCCGCGGAACAAGGCCTT
TTTCCCGAGGGTGCTCAACTTATTCAGGTAGAGAGCAAGTACGGGGAGTC
CGTGTCCGTCAAGGACATCACTGGGCGGAACCCCGTCAAGAAGAGACGAG
GAAACCCTGCCGCTGGAGATGGACCAGCCGTAGACACCACTCCCACCGCC
TCCACAAACATAGAAAACGCCGCCACCCTACCCGGCGTAGCAGGAGGGGA
CGGAGAGGGTAACCTGAGCATGGGCAAGCAAGCGCCGGCCAGGCGGAAGG
CCTCGACAGATTCTACAAACCTGGCCTTCGAGGAATGGCTGAGGGGTAGG
CGATCGAGGGACTTCTTGGCGGAACAGGTGATTAGACTGGTCACCGGGAA
CTGGTCAGTGGGGAGGGCTTATGGGCAAGGTGGGGTCACCAAAGGGCTCA
GTGATACGAGGGGGGAGACAGTGCCCACGGAGTGGTGCTACGGCCCTCAG
AAACTTAACTATGTCGAGCTGAAGAAGGCGGAGATGAGAGAAAGGCTGGC
AAAGGAGAAGGGCGCCACTTTCACGTACAGCATGGACTACGTGAGCCAGA
CCGTCAGTCTAGTGGACGAGTTCCGCGTTAAAGAAGACGAGGAGGTGAAT
ACGAATCTTGACGTTTCAACGGTCATCTTCCCCTCCCAAAGTCAGGACTA
A
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protein sequence of EsuBft123_10a-0001

>EsuBft123_10 ID=EsuBft123_10|Name=EsuBft123_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=516bp
MAGSAGKHNAHGVASFHLSGLLDQSRQLVMAYSNSKRRLEDDASTATSAL
PSAITDVAPRLKMRAEICQRKRREIPRGGVEDWHLTDEERFVRWPGALSL
ARPLRTLEEGSAERTGPATEEPRPFSRAIFVVEYEEGGALTRDVTAAMDS
INGRALNNIRGSLRAYVLSPEEKQAADDGALDIVCGFMIIDDCSRTMVLE
GLCGPQGGLTALLKKVGRTGPNGQAYRALENPEVRFSRRMYTCFDADLKK
VRLRDPLPTLCQNPEIYDRSKVSADCFDALHCLRMLRKVDRLREAAEQGL
FPEGAQLIQVESKYGESVSVKDITGRNPVKKRRGNPAAGDGPAVDTTPTA
STNIENAATLPGVAGGDGEGNLSMGKQAPARRKASTDSTNLAFEEWLRGR
RSRDFLAEQVIRLVTGNWSVGRAYGQGGVTKGLSDTRGETVPTEWCYGPQ
KLNYVELKKAEMRERLAKEKGATFTYSMDYVSQTVSLVDEFRVKEDEEVN
TNLDVSTVIFPSQSQD
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mRNA from alignment at Scaffold_38:312446..316477-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft123_10a-0001 ID=EsuBft123_10a-0001|Name=EsuBft123_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4032bp|location=Sequence derived from alignment at Scaffold_38:312446..316477- (Ectocarpus subulatus male Bft15b)
ATGGCGGGGTCGGCGGGCAAACACAACGCGCACGGTGTGGCTTCCTTCCA
CCTTTCGGGGCTCCTCGACCAGAGCCGCCAGCTGGTCATGGCGTACAGCA
ACAGCAAGCGAAGACTAGAAGACGACGCCAGCACAGCTACGTCGGCACTT
CCATCGGCGATCACGGATGTGGCTCCGCGGCTAAAGATGCGAGCTGAGAT
CTGCCAGAGGAAACGGCGGGAGATCCCCAGGGGAGGGGTCGAGGACTGGC
ACTTGACGGACGAGGAGCGCTTCGTGCGCTGGCCCGGCGCGTACCTTGAC
GCGGGATCCTCGGTTGGAGTCAGGCGAGCGAATCGAAGTGAACGGCAATG
GGTGTGCGCATGTGTGCTCTAGCTCTGCTCAATGGTGCCGCGCACTGCGC
GAGCTTGAACAAGCCGGGCGGGCGGGTGACCGTCGTGCTGCTAGTAATTA
GTGTAGTACGCTGCGCCCTTGTTCGTTGCATGACCACTGACGGACTTCGA
ACGCGCGAAACACATCCGTGAACACATCCGTGAACACGCAATCTATGCAG
ACTGTCGCTAGCGAGGCCTCTCCGCACTCTGGAGGAGGGCTCAGCGGAGC
GCACCGGGCCGGCGACAGAGGAGCCCAGGCCGTTTTCGCGGGCGATTTTT
GTGGTGGAATACGAGGAAGGGGGGGCTCTCACAAGAGATGTTACGGCGGC
GATGGACAGCATCAACGGCCGCGCCTTGAACAACATTCGGGGCTCGCTAC
GGGCGTACGTTCTCTCTCCAGAGGTAATGTACATTCGGTAGGAGACAACA
CATGCGGTTGGTCGTTTGTTGTCTTTCCTCGCTTGGAGCTTTTTCAGTGC
AAGTTTGAATGCCTTCCCTTAATTCTCGTGCCGAAAAGGTAGATCACTAC
AAGAGTTCCTTTCAACCTTGTCCGTGTTCGTGACTATCAAATCCTTAGCT
TCGTAACCAATTCTTGCTTGCGACAAGAAGCTCGCATGGGAAATGTTCAG
AAATGTTCACAAAAGAGAAGCAAAAATGTCACCCACATCACTTTGTAGAG
ACTGATGGTGGAAGTACAGACAGCAAGCGCTGGCAACGACTCTTTGGAGC
GTGGCTGCCTCCCAGATGAAGGCCATGCTGATGCATTTTTCTCTATTTGT
GAACATTGTTGTGGTGGAAAGGTGCTCCAGAGCTGCAGCCTCTTAATATG
GTTGTGTGATCTAGCGTGCATACGCTGAGCACAGCACCTCGCGCGTTTCA
TTGGGATATCCTCAGGAGAAGCAAGCGGCAGATGACGGCGCTCTGGACAT
CGTGTGCGGTTTCATGATCATCGACGATTGCAGTCGCACGATGGTGCTAG
AGGGGTTATGTGGGCCCCAGGGAGGACTCACTGCACTCTTGAAAAAGGTG
GGGCGCACCGGGCCAAACGGGCAGGCGTATCGAGCGCTGGAGAACCCTGA
AGTGAGGTTCTCAAGGCGGATGTACACCTGTTTCGATGCTGACTTGAAGA
AGGTAAGTACACCTCAGTAGTTAACACCATTCTCGTAAGCTGCTCGCGCA
GGCCTGTTTCGTAAGTTCTGCAAGGTGCTGTGATTGTAGATTTAAGCTAT
TGGGAAGACGCAGTCGCCCTGAGTGACGTCCTCAATTGAAGCTGAGGGTT
TTATCTTGTTCCTACATGTTGTTCTGTTTCTTCGATCACATTGAACTGGC
CGACTATTGACGTCTGAACAATCCCTCTCGACGACGCTAGTAGCATTTCG
AGTTGGAGCGCATGAAGTTGAGGTAAATACTCTACGCCGTACGACCAAAT
GGAAGGAATTACAAAAAGCACCCACCCCTTCTTCACAAACGATCCGCAAC
GTTCGACCTGTCTTTCCGTGTGGCTATTGGCGGGTGTCCACGTTGAAAGG
TACGATTGCGAGACCCGCTACCAACCCTCTGCCAGAACCCAGAAATCTAT
GACCGTTCCAAGGTCAGCGCCGACTGCTTCGACGCTCTCCACTGCCTACG
GATGCTGCGAAAGGTCGATAGGTTACGGGAGGCCGCGGAACAAGGCCTTT
TTCCCGAGGGTGCTCAACTTATTCAGGTATGCGCAGGCGGCCTCCTGTCT
CACAGAGACCTTCAGCTCGGAACATCGCCCACAGATCCGGTGGCGTAGAG
CGAATAGCGTGCTCCCTGTAGTACATTCGAGTATGTTGTGCGATGCACCG
CAATGGTGGGGTCGCCGCGAGACCGAGCGCGCGCTACAACATGCACGAAC
AACGAACGCCGCGTTCTTTTGAAGGGGGTGTACTAATAGGGTTCTCACCA
GACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGGCGA
GTCGAAGGGTGCGCTGCATCCTGCTAAGGGTGTTTGGCATCTTGTGCTTA
CTTCCTTGCGTACGGATGACAGCTGCGTATGACTTAATTCATTTTCTGGT
GCTTTCACTTCCTGAGACAGTTGTAAGCACTGTGTAACTGCCTCGAGGGT
GCTTGACCATATGAACACAACGTGGTGCAATTGTCCCCCTTGCGCGGAGT
GAGGCTTGTCCACCCCGCACAATATGATCTACTCGACCACCCTTATGGTT
ACCGCCAAAACAAAAAAAAGAGGTAAACAAAAACGGTAACCTGGTTGCCG
AGTTCACGAAGTGAATTGGCTCGTTTTACAACGTCGTTGCCAAGCGACGA
AACCCAACCCCGATGGCAAACACCGGGGGGGGCGTTCTTTTGAAGTTCGC
GCGCAAAATTCCAGCCTTATTTTATGTCAAAACACAACTACGACTCAACA
GGTAGAGAGCAAGTACGGGGAGTCCGTGTCCGTCAAGGACATCACTGGGC
GGAACCCCGTCAAGAAGAGACGAGGAAACCCTGCCGCTGGAGATGGACCA
GCCGTAGACACCACTCCCACCGCCTCCACAAACATAGAAAACGCCGCCAC
CCTACCCGGCGTAGCAGGAGGGGACGGAGAGGGTAACCTGAGCATGGGCA
AGCAAGCGCCGGCCAGGCGGAAGGCCTCGACAGATTCTACAAACCTGGCC
TTCGAGGAATGGCTGAGGGGTAGGCGATCGAGGGACTTCTTGGCGGAACA
GGTGATTAGACTGGTCACCGGGAACTGGTCAGTGGGGAGGGCTTATGGGC
AAGGTGGGGTCACCAAAGGTACAACGTGGTTCAACCACCCGCCTCCATAT
TTACGCAGGGCTCAGTGATACGAGGTGAGCGGTGTCTGTCCAACCAAACA
TCTCGCGCGTGAGCAAGACACCTTCTATAGTTGATTTTGTCCCGAAACAC
GTACAACGAGACTAGGTGTTCGTCCGGGATACAAAAGACACACTTCGCCC
ACCCTTCTAAGAAACAGTTCGCCTGCCCTTCATACCTTCTTATTGTCGCG
TGTGCCGTCGCGGTCAACAAATCAGGACGAGATCTTGGCAAAGAATCATG
ACATTTTCGTAGAGAGACAGAAGCGAAACGACGAGAAGCGCAGGGGGGAG
ACAGTGCCCACGGAGTGGTGCTACGGCCCTCAGAAACTTAACTATGTCGA
GCTGAAGAAGGTAAGTGAATCGGTGACTACGACCCACATAAAACCCATTG
TCTGCGGTCTGTGGTCGCTGCGCTCTACCAAAACATCTCGTTTGGATCCG
GAGGGACCTTGGTAGCCCCTCCTGTTGCGTGCCAAAAGATAACATTGGAA
CGAAGCCTGCCACGGCCAATTTCCGCAACGATGCGCTTGTGAGACAGCAA
ATTGGGCAATAATTCCAAAGTACTTTGGAAGCATACAGATCACGTGACAA
CCCAAGCGAAATATTCAAGCTGTGATGGCGCACACCTTGCGTTTAATCTG
TTGTCCAGGCGGAGATGAGAGAAAGGCTGGCAAAGGAGAAGGGCGCCACT
TTCACGTACAGCATGGACTACGTGAGCCAGACCGTCAGTCTAGTGGACGA
GTTCCGCGTTAAAGAAGACGAGGAGGTGAATACGAATCTTGACGTTTCAA
CGGTCATCTTCCCCTCCCAAAGTCAGGACTAA
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Coding sequence (CDS) from alignment at Scaffold_38:312446..316477-

>EsuBft123_10a-0001 ID=EsuBft123_10a-0001|Name=EsuBft123_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1551bp|location=Sequence derived from alignment at Scaffold_38:312446..316477- (Ectocarpus subulatus male Bft15b)
ATGGCGGGGTCGGCGGGCAAACACAACGCGCACGGTGTGGCTTCCTTCCA
CCTTTCGGGGCTCCTCGACCAGAGCCGCCAGCTGGTCATGGCGTACAGCA
ACAGCAAGCGAAGACTAGAAGACGACGCCAGCACAGCTACGTCGGCACTT
CCATCGGCGATCACGGATGTGGCTCCGCGGCTAAAGATGCGAGCTGAGAT
CTGCCAGAGGAAACGGCGGGAGATCCCCAGGGGAGGGGTCGAGGACTGGC
ACTTGACGGACGAGGAGCGCTTCGTGCGCTGGCCCGGCGCACTGTCGCTA
GCGAGGCCTCTCCGCACTCTGGAGGAGGGCTCAGCGGAGCGCACCGGGCC
GGCGACAGAGGAGCCCAGGCCGTTTTCGCGGGCGATTTTTGTGGTGGAAT
ACGAGGAAGGGGGGGCTCTCACAAGAGATGTTACGGCGGCGATGGACAGC
ATCAACGGCCGCGCCTTGAACAACATTCGGGGCTCGCTACGGGCGTACGT
TCTCTCTCCAGAGGAGAAGCAAGCGGCAGATGACGGCGCTCTGGACATCG
TGTGCGGTTTCATGATCATCGACGATTGCAGTCGCACGATGGTGCTAGAG
GGGTTATGTGGGCCCCAGGGAGGACTCACTGCACTCTTGAAAAAGGTGGG
GCGCACCGGGCCAAACGGGCAGGCGTATCGAGCGCTGGAGAACCCTGAAG
TGAGGTTCTCAAGGCGGATGTACACCTGTTTCGATGCTGACTTGAAGAAG
GTACGATTGCGAGACCCGCTACCAACCCTCTGCCAGAACCCAGAAATCTA
TGACCGTTCCAAGGTCAGCGCCGACTGCTTCGACGCTCTCCACTGCCTAC
GGATGCTGCGAAAGGTCGATAGGTTACGGGAGGCCGCGGAACAAGGCCTT
TTTCCCGAGGGTGCTCAACTTATTCAGGTAGAGAGCAAGTACGGGGAGTC
CGTGTCCGTCAAGGACATCACTGGGCGGAACCCCGTCAAGAAGAGACGAG
GAAACCCTGCCGCTGGAGATGGACCAGCCGTAGACACCACTCCCACCGCC
TCCACAAACATAGAAAACGCCGCCACCCTACCCGGCGTAGCAGGAGGGGA
CGGAGAGGGTAACCTGAGCATGGGCAAGCAAGCGCCGGCCAGGCGGAAGG
CCTCGACAGATTCTACAAACCTGGCCTTCGAGGAATGGCTGAGGGGTAGG
CGATCGAGGGACTTCTTGGCGGAACAGGTGATTAGACTGGTCACCGGGAA
CTGGTCAGTGGGGAGGGCTTATGGGCAAGGTGGGGTCACCAAAGGGCTCA
GTGATACGAGGGGGGAGACAGTGCCCACGGAGTGGTGCTACGGCCCTCAG
AAACTTAACTATGTCGAGCTGAAGAAGGCGGAGATGAGAGAAAGGCTGGC
AAAGGAGAAGGGCGCCACTTTCACGTACAGCATGGACTACGTGAGCCAGA
CCGTCAGTCTAGTGGACGAGTTCCGCGTTAAAGAAGACGAGGAGGTGAAT
ACGAATCTTGACGTTTCAACGGTCATCTTCCCCTCCCAAAGTCAGGACTA
A
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