EsuBft2030_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2030_2a-0001
Unique Name	EsuBft2030_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_38	contig	Scaffold_38:13798..15141 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	15368.BRADI5G20467.1
ProteomeId	EsuBft2030_2
Protein domains	Coil
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	134
Evalue	2.66e-05
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
KEGG ko	ko:K15053
KEGG Pathway	ko04144,ko04217,map04144,map04217
KEGG Module	M00412
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050347,GO:0051186,GO:0051188,GO:0061458,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Description	Ribonuclease H protein
COG category	E
BRITE	ko00000,ko00001,ko00002,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2030_2a	EsuBft2030_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_38 13798..15141 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2030_2a-0001-exon	EsuBft2030_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_38 13798..15141 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2030_2a-0001-cds	EsuBft2030_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_38 13798..15141 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2030_2a-0001	EsuBft2030_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_38 13798..15141 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_38:13798..15141+
coding sequence from alignment at Scaffold_38:13798..15141+

spliced messenger RNA

>EsuBft2030_2a-0001 ID=EsuBft2030_2a-0001|Name=EsuBft2030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1344bp|location=Sequence derived from alignment at Scaffold_38:13798..15141+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTAAACCGAAACAGAAGCAATTCAATCGACGGGAATGGCAGT
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
CGAGGATGATGTTGTTCTTCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGA
CGGAAGCGCGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCA
GTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGC
AGAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGT
TCGGGCTGACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCA
ACGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGAC
CATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACC
TCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTAC
AGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTT
CGACAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTCGAGCTGGCAG
GGGGGGAGAAGCGACGTAGGGGGATACAGGAACAGAACTGGCCGAAGTGT
GTGCTCGACGACCTGAAGGCATTCGGGGCCGACCACGGATCTACGAAAAC
CGATCCTTGTTGTCTCGGAATCCCGGTACCGAAAGACACGGCACCGAAGT
TAAAGTGGACGGAAGCCGCGAAGGTAAAAGGGGGAGTACCCTGA

protein sequence of EsuBft2030_2a-0001

>EsuBft2030_2 ID=EsuBft2030_2|Name=EsuBft2030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=447bp
MVVATVNLGGRLAHNRAVRTKPKQKQFNRREWQFXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXSEDDVVLRSLVCLEEGKTEARGGEETPLDRVRRA
VWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRA
TDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINY
RSRGAWACLRRYGRELFDRPQAPFRLKIRLELAGGEKRRRGIQEQNWPKC
VLDDLKAFGADHGSTKTDPCCLGIPVPKDTAPKLKWTEAAKVKGGVP

mRNA from alignment at Scaffold_38:13798..15141+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2030_2a-0001 ID=EsuBft2030_2a-0001|Name=EsuBft2030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1344bp|location=Sequence derived from alignment at Scaffold_38:13798..15141+ (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTAAACCGAAACAGAAGCAATTCAATCGACGGGAATGGCAGT
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
CGAGGATGATGTTGTTCTTCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGA
CGGAAGCGCGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCA
GTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGC
AGAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGT
TCGGGCTGACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCA
ACGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGAC
CATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACC
TCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTAC
AGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTT
CGACAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTCGAGCTGGCAG
GGGGGGAGAAGCGACGTAGGGGGATACAGGAACAGAACTGGCCGAAGTGT
GTGCTCGACGACCTGAAGGCATTCGGGGCCGACCACGGATCTACGAAAAC
CGATCCTTGTTGTCTCGGAATCCCGGTACCGAAAGACACGGCACCGAAGT
TAAAGTGGACGGAAGCCGCGAAGGTAAAAGGGGGAGTACCCTGA

Coding sequence (CDS) from alignment at Scaffold_38:13798..15141+

>EsuBft2030_2a-0001 ID=EsuBft2030_2a-0001|Name=EsuBft2030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1344bp|location=Sequence derived from alignment at Scaffold_38:13798..15141+ (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAACCGTGC
AGTCCGGACTAAACCGAAACAGAAGCAATTCAATCGACGGGAATGGCAGT
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
CGAGGATGATGTTGTTCTTCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGA
CGGAAGCGCGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCA
GTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGC
AGAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGT
TCGGGCTGACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCA
ACGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGAC
CATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACC
TCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTAC
AGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTT
CGACAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTCGAGCTGGCAG
GGGGGGAGAAGCGACGTAGGGGGATACAGGAACAGAACTGGCCGAAGTGT
GTGCTCGACGACCTGAAGGCATTCGGGGCCGACCACGGATCTACGAAAAC
CGATCCTTGTTGTCTCGGAATCCCGGTACCGAAAGACACGGCACCGAAGT
TAAAGTGGACGGAAGCCGCGAAGGTAAAAGGGGGAGTACCCTGA