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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7668.SPU_001615-tr |
| ProteomeId | EsuBft1730_4 |
| Protein domains | Coil |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 7668.SPU_001615-tr|- |
| Length | 354 |
| Evalue | 3.92e-19 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | E |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1730_4a-0001 ID=EsuBft1730_4a-0001|Name=EsuBft1730_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3545bp|location=Sequence derived from alignment at Scaffold_377:195988..199631+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGGCTGCTGCGATGC CAAGCTTATGGGCGCGTACGGACGCGACATTATGGAGAACAACGGGGAAC GACTCCTTGGACTGGCATCAGACAACCTACTCTCCCTGACCAACACCTAC TTCCGGACACCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAA GGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGGCGGACC GGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCAAAGACTCT GACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCGCACC CAACCGACGAGTGCGGGGGAGCAGCGGAAGCAGCCGGATCTGTATCGACC TCGAGGGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCCAAAGCAGG GCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGAC CGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGCGC CGCTGGCGAGCACGAGATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNCGAGCGAAGCACAGCACGAGATCTCC GAAGCGTCTAAGGAGATCAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTC AAAGAACGGCGCCTTCAAGGCGACCTTGAAGGCGATGCTCAAGGCGGCGC GGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAAAGTTCTTCGAG GGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGGG TTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCA CCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACG TTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAA GTCGCCGACCATCGACCTGCATGCGGCTGACAAGAACATCAAGGACAAGG ACGGCGAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGG TGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAGATGCCACCATC AAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGG CATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTA CACGACTGAGCCACTACTGCGAGCGAGAGGGCATTCTGCCGGAGGAGCAG AACGGTTTCCGCCCACACCGGTCGACGGTCGACATACTGTTCGCCATCCA GCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCT TCGTCGACCTCACCAAGGCATACGATTCGGTNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGATCGGTTTCCGA GGGCTCTTTTCTCGAACGGTCGGTGCGATACCTGTTCTTTTCTTTCTATC ATTTTGTTTTCTTGTTCCGCGTGGTTTGTACCCTATTTTTGTTTTGTTTC CCCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTT CGTGGACTATAGAGCTTATGTGAGAAACAACAACAACAAACAACAACAGC AACAACAACAACAACAATTGCCGCAATAGTTCTGTGTTCTACTTTATTCC ACAGGTCTAATGGGTAGAACCAGCTAGTATCAGATAGCTCCCGATCGAGG CTCCGCTTTTGTTGCGAGAAAGGGAAATACTGCTCCTGAGAGGTATTCTA GCCCTCTCACGCAGCGATGCACACATACTGATCTCTCTTTGTGCAATAGA ACGACTGCACCGAGTGCGATGAGTAGTGAAGATGCTCGTACCCGCTGTAG TGGCAGGTGTAGTGTCGGAGCAAACGCCTCCTTATGAATGTTTTGGTCTG ATCCTTTTAGGGTAAGCTCCGGATGGTAGCTTGGTTGTGAGCAGAGGAGG GCGAGTCCAGACATCTCTTGCAGAGGCTCCGCTGAATGCGGCCAACTACC TCTGTGGGGGCGTTCTTGCGGAACAATGAATACCCCGAACCGTAACATCC CCCCTATTATATTATCAACTCAGAATATACTTACGCCTCATCCGGTACTT TTAACCAGAGAAATGGTAAAACTGCGAGGTTCGCCATGAACCGATATGCC TCGAAAGGGAACTATCCACCCGATACTTCAGGCCGCCATCTCTTCTCTCT CTTTTCTCTGAGGGACAAACTTTCGACGAAACCCTCTCGTGAAATGATTG GCATGGAGAGCGATCTCCGTGCCAGTGGAATAGACCGACATACCGCCACT GGCTATAATAAGTGTTATCACAATCATGACAGCGATTGCGACCAAGTCCT ACAGGACCTAACAAGTCCACGCATGCGCGCTTACACACAATGGACGCACC AATCAAACATCGACTCGGTACCGCCTTCCGAGCAGGAGCAAAGACGTAGG CTCAAAAAGGTGAACCCCATCCCCACGACTGAACCTCAAGAAACCTTATC CTCCGATAGCACCGAATGCACCAGACACCCAGACTTCACCATCTAATCAC CAACACCAGAAAACTGCTTCCCCCCACCATGACATCAACGATGCGAAAAA GCATATACCAAGGACGGGAAAACTGCTTCTCCCCACCATGACATC back to topprotein sequence of EsuBft1730_4a-0001 >EsuBft1730_4 ID=EsuBft1730_4|Name=EsuBft1730_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=595bp
MDANARTGRRRDGCCDAKLMGAYGRDIMENNGERLLGLASDNLLSLTNTY FRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDS DHNLVLTTVRLPPRVAPNRRVRGSSGSSRICIDLEGLRKDKHLRVAFQSR ASSRPPPTALRRPTGETAAELTATVMSAAAETAPLASTRSXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEAQHEIS EASKEIKAAQQQLRGASKNGAFKATLKAMLKAARKKRSIARWRALEKFFE GYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPT FIRQRWARWFHKLLNTKSPTIDLHAADKNIKDKDGEVLRDPTFIRQRWAR WFHKLLNTKSPTIDLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKDATI KVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQ NGFRPHRSTVDILFAIQRLHELARKKSTAVFACFVDLTKAYDSVX back to topmRNA from alignment at Scaffold_377:195988..199631+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1730_4a-0001 ID=EsuBft1730_4a-0001|Name=EsuBft1730_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3644bp|location=Sequence derived from alignment at Scaffold_377:195988..199631+ (Ectocarpus subulatus male Bft15b) ATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGGCTGCTGCGATGC
CAAGCTTATGGGCGCGTACGGACGCGACATTATGGAGAACAACGGGGAAC
GACTCCTTGGACTGGCATCAGACAACCTACTCTCCCTGACCAACACCTAC
TTCCGGACACCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAA
GGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGGCGGACC
GGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCAAAGACTCT
GACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCGCACC
CAACCGACGAGTGCGGGGGAGCAGCGGAAGCAGCCGGATCTGTATCGACC
TCGAGGGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCCAAAGCAGG
GCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGAC
CGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGCGC
CGCTGGCGAGGTGCGCACGATGGCAGAGAGGCTGGTACACGAGCGAAGCG
CAGCACGAGATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCGAGCGAAGCACAGCACGAGATCTCCGAAGCGT
CTAAGGAGATCAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAAC
GGCGCCTTCAAGGCGACCTTGAAGGCGATGCTCAAGGCGGCGCGGAAGAA
GCGCAGCATCGCGAGGTGGAGAGCACTGGAAAAGTTCTTCGAGGGCTATG
TACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTAC
AGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCA
GAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTC
GCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCG
ACCATCGACCTGCATGCGGCTGACAAGGTCAANGGCACCTGAAGATGATC
GACGTCGAAGGTAAACTGTCGTTCACCTCTCAGAACATCAAGGACAAGGA
CGGCGAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGT
GGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAGATGCCACCATCA
AAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGC
ATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTAC
ACGACTGAGCCACTACTGCGAGCGAGAGGGCATTCTGCCGGAGGAGCAGA
ACGGTTTCCGCCCACACCGGTCGACGGTCGACATACTGTTCGCCATCCAG
CGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTT
CGTCGACCTCACCAAGGCATACGATTCGGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGATCGGTTTCCGAG
GGCTCTTTTCTCGAACGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCA
TTTTGTTTTCTTGTTCCGCGTGGTTTGTACCCTATTTTTGTTTTGTTTCC
CCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTTC
GTGGACTATAGAGCTTATGTGAGAAACAACAACAACAAACAACAACAGCA
ACAACAACAACAACAATTGCCGCAATAGTTCTGTGTTCTACTTTATTCCA
CAGGTCTAATGGGTAGAACCAGCTAGTATCAGATAGCTCCCGATCGAGGC
TCCGCTTTTGTTGCGAGAAAGGGAAATACTGCTCCTGAGAGGTATTCTAG
CCCTCTCACGCAGCGATGCACACATACTGATCTCTCTTTGTGCAATAGAA
CGACTGCACCGAGTGCGATGAGTAGTGAAGATGCTCGTACCCGCTGTAGT
GGCAGGTGTAGTGTCGGAGCAAACGCCTCCTTATGAATGTTTTGGTCTGA
TCCTTTTAGGGTAAGCTCCGGATGGTAGCTTGGTTGTGAGCAGAGGAGGG
CGAGTCCAGACATCTCTTGCAGAGGCTCCGCTGAATGCGGCCAACTACCT
CTGTGGGGGCGTTCTTGCGGAACAATGAATACCCCGAACCGTAACATCCC
CCCTATTATATTATCAACTCAGAATATACTTACGCCTCATCCGGTACTTT
TAACCAGAGAAATGGTAAAACTGCGAGGTTCGCCATGAACCGATATGCCT
CGAAAGGGAACTATCCACCCGATACTTCAGGCCGCCATCTCTTCTCTCTC
TTTTCTCTGAGGGACAAACTTTCGACGAAACCCTCTCGTGAAATGATTGG
CATGGAGAGCGATCTCCGTGCCAGTGGAATAGACCGACATACCGCCACTG
GCTATAATAAGTGTTATCACAATCATGACAGCGATTGCGACCAAGTCCTA
CAGGACCTAACAAGTCCACGCATGCGCGCTTACACACAATGGACGCACCA
ATCAAACATCGACTCGGTACCGCCTTCCGAGCAGGAGCAAAGACGTAGGC
TCAAAAAGGTGAACCCCATCCCCACGACTGAACCTCAAGAAACCTTATCC
TCCGATAGCACCGAATGCACCAGACACCCAGACTTCACCATCTAATCACC
AACACCAGAAAACTGCTTCCCCCCACCATGACATCAACGATGCGAAAAAG
CATATACCAAGGACGGGAAAACTGCTTCTCCCCACCATGACATC back to topCoding sequence (CDS) from alignment at Scaffold_377:195988..199631+ >EsuBft1730_4a-0001 ID=EsuBft1730_4a-0001|Name=EsuBft1730_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1785bp|location=Sequence derived from alignment at Scaffold_377:195988..199631+ (Ectocarpus subulatus male Bft15b) ATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGGCTGCTGCGATGC CAAGCTTATGGGCGCGTACGGACGCGACATTATGGAGAACAACGGGGAAC GACTCCTTGGACTGGCATCAGACAACCTACTCTCCCTGACCAACACCTAC TTCCGGACACCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAA GGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGGCGGACC GGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCAAAGACTCT GACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCGCACC CAACCGACGAGTGCGGGGGAGCAGCGGAAGCAGCCGGATCTGTATCGACC TCGAGGGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCCAAAGCAGG GCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGAC CGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGCGC CGCTGGCGAGCACGAGATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNCGAGCGAAGCACAGCACGAGATCTCC GAAGCGTCTAAGGAGATCAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTC AAAGAACGGCGCCTTCAAGGCGACCTTGAAGGCGATGCTCAAGGCGGCGC GGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAAAGTTCTTCGAG GGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGGG TTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCA CCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACG TTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAA GTCGCCGACCATCGACCTGCATGCGGCTGACAAGAACATCAAGGACAAGG ACGGCGAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGG TGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAGATGCCACCATC AAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGG CATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTA CACGACTGAGCCACTACTGCGAGCGAGAGGGCATTCTGCCGGAGGAGCAG AACGGTTTCCGCCCACACCGGTCGACGGTCGACATACTGTTCGCCATCCA GCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCT TCGTCGACCTCACCAAGGCATACGATTCGGTNNNN back to top
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