EsuBft2597_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2597_3a-0001
Unique NameEsuBft2597_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:68603..69235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G7X9
ProteomeIdEsuBft2597_3
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length51
Hectar predicted targeting categorysignal peptide
Evalue3.86e-11
EggNOG OGsCOG0515@1|root,COG4886@1|root,KOG0192@2759|Eukaryota,KOG0619@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EC2.7.11.1
Descriptionregulation of response to stimulus
COG categoryU
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2597_3aEsuBft2597_3aEctocarpus subulatus male Bft15bgeneScaffold_376 68603..69235 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2597_3a-0001-exonagat-exon-38696Ectocarpus subulatus male Bft15bexonScaffold_376 68603..68764 +
EsuBft2597_3a-0001-exonEsuBft2597_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 68880..69235 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2597_3a-0001-exonagat-five_prime_utr-6712Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 68603..68613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2597_3a-0001-cdsEsuBft2597_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 68614..68764 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2597_3a-0001-exonagat-three_prime_utr-10482Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 69176..69235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2597_3a-0001EsuBft2597_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 68614..69175 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2597_3a-0001 ID=EsuBft2597_3a-0001|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_376:68603..69235+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGGGCGCATCGATGGTGGGCGTTGTAGTCGGCGCTGTGGCCGGCGCGCTG
GCGTTAGGAGCACTTGGGTTCTTCCTATATCGCCGACGAACCGTAAAGAG
CACCGACCCCGACCCGCCGGCCCCTCCTAGCAACGGTGGGAACAGCCTGG
AGCACGGCCGGGCCTGGAGCACGGCCGGGGTGAACCGCAGCAGCGACGGC
AGCATGACACCCATTCCGATCGGAGGAAACGATGCCCTGGGCCCGCCACC
TGCTATCCGGAACGGGACACCCACTCCGATCGGAGGAAACGATACCCTGG
GCCCGCCACCTGCTACCCGGAAAGAATCCCTGCCGTCGCCGACACCGTAT
GCGCATGATGTTGCACACCAGCGTGATGCTGTTCCTCCGTCATCCCCACA
CAGGCGTGACGGCGGTGCGCGGTCACACCACGGCCCGATAGCCTATTTAA
TGGCTTGATGTCTCGTTGTAGGTAGATCGATACCTCACAGTCTTATCGAT
CGTAGCTATTGCTTGATC
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protein sequence of EsuBft2597_3a-0001

>EsuBft2597_3 ID=EsuBft2597_3|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MVGVVVGAVAGALALGALGFFLYRRRTVKSTDPDPPAPPSNGGNSLEHGR
AWSTAGVNRSSDGSMTPIPIGGNDALGPPPAIRNGTPTPIGGNDTLGPPP
ATRKESLPSPTPYAHDVAHQRDAVPPSSPHRRDGGARSHHGPIAYLMA
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mRNA from alignment at Scaffold_376:68603..69235+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2597_3a-0001 ID=EsuBft2597_3a-0001|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=633bp|location=Sequence derived from alignment at Scaffold_376:68603..69235+ (Ectocarpus subulatus male Bft15b)
AGGGCGCATCGATGGTGGGCGTTGTAGTCGGCGCTGTGGCCGGCGCGCTG
GCGTTAGGAGCACTTGGGTTCTTCCTATATCGCCGACGAACCGTAAAGAG
CACCGACCCCGACCCGCCGGCCCCTCCTAGCAACGGTGGGAACAGCCTGG
AGCACGGCCGGGGTGAACCGCAGCAGCGACGGCAGCAGGACACCCATTCC
GATCGGANCTATCGCCGACGAACCGCGAAGAGCACGGACCCCGACCCGTC
GGCCCCTCCTAGCAACGGTGGGGACAGCCTGGAGCACGGCCGGGGTGAAC
CGCAGCAGCGACGGCAGCATGACACCCATTCCGATCGGAGGAAACGATGC
CCTGGGCCCGCCACCTGCTATCCGGAACGGGACACCCACTCCGATCGGAG
GAAACGATACCCTGGGCCCGCCACCTGCTACCCGGAAAGAATCCCTGCCG
TCGCCGACACCGTATGCGCATGATGTTGCACACCAGCGTGATGCTGTTCC
TCCGTCATCCCCACACAGGCGTGACGGCGGTGCGCGGTCACACCACGGCC
CGATAGCCTATTTAATGGCTTGATGTCTCGTTGTAGGTAGATCGATACCT
CACAGTCTTATCGATCGTAGCTATTGCTTGATC
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Coding sequence (CDS) from alignment at Scaffold_376:68603..69235+

>EsuBft2597_3a-0001 ID=EsuBft2597_3a-0001|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_376:68603..69235+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGTTGTAGTCGGCGCTGTGGCCGGCGCGCTGGCGTTAGGAGC
ACTTGGGTTCTTCCTATATCGCCGACGAACCGTAAAGAGCACCGACCCCG
ACCCGCCGGCCCCTCCTAGCAACGGTGGGAACAGCCTGGAGCACGGCCGG
GCCTGGAGCACGGCCGGGGTGAACCGCAGCAGCGACGGCAGCATGACACC
CATTCCGATCGGAGGAAACGATGCCCTGGGCCCGCCACCTGCTATCCGGA
ACGGGACACCCACTCCGATCGGAGGAAACGATACCCTGGGCCCGCCACCT
GCTACCCGGAAAGAATCCCTGCCGTCGCCGACACCGTATGCGCATGATGT
TGCACACCAGCGTGATGCTGTTCCTCCGTCATCCCCACACAGGCGTGACG
GCGGTGCGCGGTCACACCACGGCCCGATAGCCTATTTAATGGCTTGA
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