EsuBft2597_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2597_2a-0001
Unique Name	EsuBft2597_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_376	contig	Scaffold_376:57679..61937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2597_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	358
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2597_2a	EsuBft2597_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_376 57679..61937 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2597_2a-0001	EsuBft2597_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_376 57955..58266 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2597_2a-0001-exon	agat-exon-38695	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 57679..58102 +
EsuBft2597_2a-0001-exon	agat-exon-38694	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 58256..58732 +
EsuBft2597_2a-0001-exon	agat-exon-38693	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 58780..58826 +
EsuBft2597_2a-0001-exon	EsuBft2597_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 59137..61069 +
EsuBft2597_2a-0001-exon	agat-exon-38692	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 61230..61937 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2597_2a-0001-exon	agat-five_prime_utr-6711	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_376 57679..57954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2597_2a-0001-cds	EsuBft2597_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_376 57955..58102 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2597_2a-0001-exon	agat-three_prime_utr-10478	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_376 58267..58732 +
EsuBft2597_2a-0001-exon	agat-three_prime_utr-10479	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_376 58780..58826 +
EsuBft2597_2a-0001-exon	agat-three_prime_utr-10480	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_376 59137..61069 +
EsuBft2597_2a-0001-exon	agat-three_prime_utr-10481	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_376 61230..61937 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_376:57679..61937+
coding sequence from alignment at Scaffold_376:57679..61937+

spliced messenger RNA

>EsuBft2597_2a-0001 ID=EsuBft2597_2a-0001|Name=EsuBft2597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3589bp|location=Sequence derived from alignment at Scaffold_376:57679..61937+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCGTCAAGAAAACTAATTATTCTTCACCAAACCCAATACTGGTGTAGTA
GGGCGGGGTAAATGAGCCACGGGTAACGACTCGGAACGTTGCAGTATTTT
CGGTCTGTGATGCTGTGGCGAGACACGCTTTATCCAGGCCGCAAACGCAC
ACACGCGCGCGCGCGGCTGTCCGCAACGTATTTGTTATACAAAATCGAGG
ACGTGTCCAGTATAAATTCGAAGGGATCTTCAAGAGGGGACTAGTTGGTG
CATCCACCCCTCCGCTGGAGTTTCAAATGCTGGTCTTGGATTCGCTCTCG
CCGGCGACTACAAGTACAACGCCGAAGACTCTCCTGGCACAATCCGTCTA
CGCCGTCCTTTCCCGTAGCGTGCAACTCATCTTTTCTGCCATTTTTCTGG
ACGCGGCGCAGGAGAGTGGTGGAGGTAGACACTGATCAGAGGGGGATTCA
TTCGCTTGCGAACACCGGATTCACGCAGGACGAGGTGTGATCACAAATGT
TTGTTTACCTCTTCGAGTATTGAGCAGCCAATTTTCCCGGTGAAGTTGGT
CATTGCAAAGCCACAATCGTGAGCGGCTCCCCATCTCCTTACAGTACCTC
ATGAAGAATTTGTTGACCAGAGTGACCGATTTTCTTCGGAAGGTGAAGGT
CTACTTCGTAGGCCAAGGTTGGTGCCGCTGGCGTATTGGGTCGTTCTCGA
AGACATTGCCATCTGCGATATTTGCTCCTGTTTCGGAGGGGTCGATCTCA
CGCAACAAGATTTGTCGAATCGTGCGATGCTGTATGTCCTCAAGGTAGTC
CTTTGTCGGCGTTCAGACTGCCCTGTATCCACGGAACCTATCTTCGACTT
CGATGGACCCATTGATTTTGGGACTTACCTTATTCGAACGGTTCCGCGTG
GGTTCATTTTGACGACACGGCGTTGCTATTGTAGACATGCTGCGTAAGTT
AATGATCGTCTGGACACCACGGACGCCGACCGCTGCCAAATTTCGGCTAT
TGGAAGTTTGTAAGACCCCAAACGTGGTTGGTGGCTGGCGAGGCACCCGT
TGATGCTCGGCATTGCTCGTTGCCGGAGGATTTGAGTTCCATTGCAGGAT
GTAATTTTGCAATTTCCTAGGTGATGGTCGCTCCAAGATCGGCGGTATTC
ATCATTATCTAATCTCCGGTACCCGTTTGTCGGGAAACGTTCAACGCTGG
GCAGTATTGTTGAGATCAGAGCATTTGCACGACTAAGAGAGCAAGACTTG
ATACGTTTCTTGGTGTACGCAACACTCCCCCAGGGACCTTGTTGACTGCG
GAATAACAGATGCCGATTTGGACGATGTAGCGTCGTGCTTGGAAGCTGCC
GGGCTGGAGGCAATCACAAATCTGTAAGTGCTTCCCTATGCCATGGGGGT
CGGTGTTGGCCGGTTGTTTTTGTTGCTAGAAGCGGCCTTTTCAAAGTGCT
GTGCTGATACTCGAGTCGGCTTGAGGCGAGCGTACAGCCGAGCGATAAGG
TAGATTATTGTCACCTGAGCAACAACCAAAGACACCAATCCTCCCCATGA
CCCATTCAACGCCGACTAGCGCGGCGGGAAGCAGCTGGTAGGAAGTTCGG
TGTGGAACAGGTCGGGGGTGTCTGAATCCACCTCCAGCCCGTTGCTGGAA
ACGTGAGCACCAAGGATCGTGCTACGTATCGGGATCAGTTGTCGCTTCCT
GGCATTCGCCGTAGAGCCTCTACGTGATGTTGCCCTGTTGGCCTCATATC
CTAGCCTCTTGTCCGGTTCGCGGTGTACTCAATCTAACCCTGGAACGGGT
TCCCGCTGCCAACTCGTCGCCTTCGTTGTAGCCGGAAGTAGGCATGATTG
TTGTGATTGTACCCAGGCCATCGCGATCAGCATGTGCGGCAGCAAGCACT
GATTCCTGGCTCATGTGTGTTATCTGCTCCGCTCGTGGCCTTCCCTCGAC
ACCCGAAGGTCCCTGTACTCCAACGAGCTCACCACGCTGCCTGAGGGAAT
CTTCGGGGGTCTTACGGCCTTGGAATTTCTGTAAGTAGCTGTTCGACAAG
GTTGTCAGTAGAATGTTTTTCCGCATGGGGCTAGCTTGCGATGGAGTACT
AAGTTCGCAGACCAATCGTCCTCTTGACCCTTGAAAGTCCGACTAGCACG
CCGGAAAGCAGTTGGTAGGAAGTTCGGTGTGGAACAGTTCGGCGGCGTCT
GAGACCACCTCCAGCCCACGCACCATAGTCTCGCTGCCGTTATGGCGCGC
CCAAGCGCTGCGCTATCTCGCATGCTGGGGGTTGTATGGGTTTGACTGTG
ACCAGCGCGATTCGGTCAATTTCTATCTGAATATGCGTCCATTCGGAATT
TTAGCCGGTACATTCATCGCACGAAAGCAGGTTTGAGGTGATAAGAGAGA
AAGAGGCGATCTTGGCGTTGCTGGAAACCAGAGCACCCAAGGAACGTACT
ACGTACCGGGATCAGTTGTCGCTTCCTGGCGTTCGCCTTAGAGCCTGTAC
GTGGTGGTGCCCTCTTGGCCTCATATCCTAGCCTCTTATCCGATTGGCGG
TGTTCTCACTGCAACCCTGGAACGGGTTCCTACCGCCAACTCGTCGCCTT
CGCTTTAGCGGGAAGAAGGCATGATTGTTGTGATTGTAACCAGCCCATCG
CGGCGGCTGCGGCGTTGCTAGCGCCGCTGTACTGAAGGACGTGCGTACAT
GCTGGTGGGCTGGCCGCGCTTCGTAGATCAGCATGTGCGGCAGCAAGCAC
TGATTCCTGGCTCATGTGTGTTATCTGCTCCGCTCGTGGCCTTCCCTCGA
CACCCGAAGGTCCCTGATTGAGAACGAGCTCATCACGCTGCCTGAGGGAA
TCTTCGGGGGTCTTACGGCCTTGGAAACACTGTCGGGGGTGTCTGAAACC
ACCTCCAGCCCGTTGCTGGAAACGTGAGCACCAAGGATCGTGCTACGTAT
CGGGATCAGTTGTCGCTTCCTGGCATTCGCCGTAGAGCCTCTACGTGATG
GTGTTCTGTTGGCCTCATATCCTAGCCTCTTGTCCGGTTCGCGGTGTACT
CAATCTAACCCTGGAACGTGTTCCCGCTGCCAACTCGTCGCCTTCGTTGT
AGCCAGAAGTAGGCATGATTGTTGTGATTGTACCCAGGCCATCGCGATCA
GCATGTGCGGCAGAAAGCACTGATTGCTGGCTCATGTGTGTTATCTGCTC
CGCTCGTGGCCTTCCCTCTACACCATAAGGTACCTGCACTACAACGAGCT
CACCACGCTGCCTGAGGGAATCTTCGGGGGTCTTACGGCCTTGGAAGAGC
TGTAAGTAGCTGTTGGACAAGGTTGTCGGTAGAATGTTTTTCCGCATGGG
GCTAGCTCGCGATGGAGAGCTAGGATATCGCAGACAAATGGTCCCCATGA
CCCATTCAACCCCGACTAGCGCGGCGGCAAGCAGTTGGTAGGAAGTTCGG
TGTAGAACAGGTCGGGGGTGTCTGAATCCACCTCCAGCCCGTTGCTGGAA
ACGTGAGCACCAAGGATCGTGCTACGTATCGGGATCAGTTGTCGCTTCCT
GGCATTCGCCGTAGAGCCTCTACGTGATGGTGCTCTGTT

protein sequence of EsuBft2597_2a-0001

>EsuBft2597_2 ID=EsuBft2597_2|Name=EsuBft2597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MLVLDSLSPATTSTTPKTLLAQSVYAVLSRSVQLIFSAIFLDAAQESGGG
RH

mRNA from alignment at Scaffold_376:57679..61937+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2597_2a-0001 ID=EsuBft2597_2a-0001|Name=EsuBft2597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4259bp|location=Sequence derived from alignment at Scaffold_376:57679..61937+ (Ectocarpus subulatus male Bft15b)
ACCGTCAAGAAAACTAATTATTCTTCACCAAACCCAATACTGGTGTAGTA
GGGCGGGGTAAATGAGCCACGGGTAACGACTCGGAACGTTGCAGTATTTT
CGGTCTGTGATGCTGTGGCGAGACACGCTTTATCCAGGCCGCAAACGCAC
ACACGCGCGCGCGCGGCTGTCCGCAACGTATTTGTTATACAAAATCGAGG
ACGTGTCCAGTATAAATTCGAAGGGATCTTCAAGAGGGGACTAGTTGGTG
CATCCACCCCTCCGCTGGAGTTTCAAATGCTGGTCTTGGATTCGCTCTCG
CCGGCGACTACAAGTACAACGCCGAAGACTCTCCTGGCACAATCCGTCTA
CGCCGTCCTTTCCCGTAGCGTGCAACTCATCTTTTCTGCCATTTTTCTGG
ACGCGGCGCAGGAGAGTGGTGGAGGTGACTTTGAGTATTCTGGTTGGGCT
CTCCACGTTGTTGGATACCTCCGCAGGTGGGTGGATTCGTTCGTTTGAGC
AACATGGGGGCAGACCAGTATGTTGATCCAACCGCTGGCATGTAAGTGCT
GTTGCCATTTGCCTAGTAGACCGGCAGGTAGACACTGATCAGAGGGGGAT
TCATTCGCTTGCGAACACCGGATTCACGCAGGACGAGGTGTGATCACAAA
TGTTTGTTTACCTCTTCGAGTATTGAGCAGCCAATTTTCCCGGTGAAGTT
GGTCATTGCAAAGCCACAATCGTGAGCGGCTCCCCATCTCCTTACAGTAC
CTCATGAAGAATTTGTTGACCAGAGTGACCGATTTTCTTCGGAAGGTGAA
GGTCTACTTCGTAGGCCAAGGTTGGTGCCGCTGGCGTATTGGGTCGTTCT
CGAAGACATTGCCATCTGCGATATTTGCTCCTGTTTCGGAGGGGTCGATC
TCACGCAACAAGATTTGTCGAATCGTGCGATGCTGTATGTCCTCAAGGTA
GTCCTTTGTCGGCGTTCAGACTGCCCTGTATCCACGGAACCTATCTTCGA
CTTCGATGGACCCATTGATTTTGGGACTTACCTTATTCGAACGGTTCCGC
GTGGGTAAACGAAGGTGCACTGTAGCGCATGGGGCGCGAACGCCATGGCA
GGTTCATTTTGACGACACGGCGTTGCTATTGTAGACATGCTGCGTAAGGT
AAGTTTGGAAACCAAAAATTGGAAGCACCTTTCCACCGTCTGGAGAGATG
TCAGCAGTCGATTGGATACGTTGCCGGTTCCCCCGTCATTTCGTATGAGG
AGAGCCTGTGGCGTCGATACCAGTTTGTCGAGCTCGCTTTATTGTTTGTG
TCGTAGTCCGGTATCTCGTTCTCTATCGCGAAACATCGCAGTGCCGTGCC
CTGGTCGACTCCGCAATATTGATTTTGGATGCAGCTCCTGACAGTTTTGT
GTCAATCTCACCATCCCCTCTCATTTGCCGTCTGTCCTGCGTACGCCGTT
GGTTGCAGTTAATGATCGTCTGGACACCACGGACGCCGACCGCTGCCAAA
TTTCGGCTATTGGAAGTTTGTAAGACCCCAAACGTGGTTGGTGGCTGGCG
AGGCACCCGTTGATGCTCGGCATTGCTCGTTGCCGGAGGATTTGAGTTCC
ATTGCAGGATGTAATTTTGCAATTTCCTAGGTGATGGTCGCTCCAAGATC
GGCGGTATTCATCATTATCTAATCTCCGGTACCCGTTTGTCGGGAAACGT
TCAACGCTGGGCAGTATTGTTGAGATCAGAGCATTTGCACGACTAAGAGA
GCAAGACTTGATACGTTTCTTGGTGTACGCAACACTCCCCCAGGGACCTT
GTTGACTGCGGAATAACAGATGCCGATTTGGACGATGTAGCGTCGTGCTT
GGAAGCTGCCGGGCTGGAGGCAATCACAAATCTGTAAGTGCTTCCCTATG
CCATGGGGGTCGGTGTTGGCCGGTTGTTTTTGTTGCTAGAAGCGGCCTTT
TCAAAGTGCTGTGCTGATACTCGAGTCGGCTTGAGGCGAGCGTACAGCCG
AGCGATAAGGTAGATTATTGTCACCTGAGCAACAACCAAAGACACCAATC
CTCCCCATGACCCATTCAACGCCGACTAGCGCGGCGGGAAGCAGCTGGTA
GGAAGTTCGGTGTGGAACAGGTCGGGGGTGTCTGAATCCACCTCCAGCCC
GTTGCTGGAAACGTGAGCACCAAGGATCGTGCTACGTATCGGGATCAGTT
GTCGCTTCCTGGCATTCGCCGTAGAGCCTCTACGTGATGTTGCCCTGTTG
GCCTCATATCCTAGCCTCTTGTCCGGTTCGCGGTGTACTCAATCTAACCC
TGGAACGGGTTCCCGCTGCCAACTCGTCGCCTTCGTTGTAGCCGGAAGTA
GGCATGATTGTTGTGATTGTACCCAGGCCATCGCGATCAGCATGTGCGGC
AGCAAGCACTGATTCCTGGCTCATGTGTGTTATCTGCTCCGCTCGTGGCC
TTCCCTCGACACCCGAAGGTCCCTGTACTCCAACGAGCTCACCACGCTGC
CTGAGGGAATCTTCGGGGGTCTTACGGCCTTGGAATTTCTGTAAGTAGCT
GTTCGACAAGGTTGTCAGTAGAATGTTTTTCCGCATGGGGCTAGCTTGCG
ATGGAGTACTAAGTTCGCAGACCAATCGTCCTCTTGACCCTTGAAAGTCC
GACTAGCACGCCGGAAAGCAGTTGGTAGGAAGTTCGGTGTGGAACAGTTC
GGCGGCGTCTGAGACCACCTCCAGCCCACGCACCATAGTCTCGCTGCCGT
TATGGCGCGCCCAAGCGCTGCGCTATCTCGCATGCTGGGGGTTGTATGGG
TTTGACTGTGACCAGCGCGATTCGGTCAATTTCTATCTGAATATGCGTCC
ATTCGGAATTTTAGCCGGTACATTCATCGCACGAAAGCAGGTTTGAGGTG
ATAAGAGAGAAAGAGGCGATCTTGGCGTTGCTGGAAACCAGAGCACCCAA
GGAACGTACTACGTACCGGGATCAGTTGTCGCTTCCTGGCGTTCGCCTTA
GAGCCTGTACGTGGTGGTGCCCTCTTGGCCTCATATCCTAGCCTCTTATC
CGATTGGCGGTGTTCTCACTGCAACCCTGGAACGGGTTCCTACCGCCAAC
TCGTCGCCTTCGCTTTAGCGGGAAGAAGGCATGATTGTTGTGATTGTAAC
CAGCCCATCGCGGCGGCTGCGGCGTTGCTAGCGCCGCTGTACTGAAGGAC
GTGCGTACATGCTGGTGGGCTGGCCGCGCTTCGTAGATCAGCATGTGCGG
CAGCAAGCACTGATTCCTGGCTCATGTGTGTTATCTGCTCCGCTCGTGGC
CTTCCCTCGACACCCGAAGGTCCCTGATTGAGAACGAGCTCATCACGCTG
CCTGAGGGAATCTTCGGGGGTCTTACGGCCTTGGAAACACTGTAAGTAGC
TGTTGGACAAGGTCGTCGGTAGAATGTTTTTCCGCATGGGGCTAGCTTGC
GATGGGGACCTACCAGATCGCAGACCAATCGTGCCCATGACCCATTCAAC
CGCTGCCTAGCGCGGCGGGAAGCAGCTGGTAGGAAGTTCGGTGTGGAACA
GGTCGGGGGTGTCTGAAACCACCTCCAGCCCGTTGCTGGAAACGTGAGCA
CCAAGGATCGTGCTACGTATCGGGATCAGTTGTCGCTTCCTGGCATTCGC
CGTAGAGCCTCTACGTGATGGTGTTCTGTTGGCCTCATATCCTAGCCTCT
TGTCCGGTTCGCGGTGTACTCAATCTAACCCTGGAACGTGTTCCCGCTGC
CAACTCGTCGCCTTCGTTGTAGCCAGAAGTAGGCATGATTGTTGTGATTG
TACCCAGGCCATCGCGATCAGCATGTGCGGCAGAAAGCACTGATTGCTGG
CTCATGTGTGTTATCTGCTCCGCTCGTGGCCTTCCCTCTACACCATAAGG
TACCTGCACTACAACGAGCTCACCACGCTGCCTGAGGGAATCTTCGGGGG
TCTTACGGCCTTGGAAGAGCTGTAAGTAGCTGTTGGACAAGGTTGTCGGT
AGAATGTTTTTCCGCATGGGGCTAGCTCGCGATGGAGAGCTAGGATATCG
CAGACAAATGGTCCCCATGACCCATTCAACCCCGACTAGCGCGGCGGCAA
GCAGTTGGTAGGAAGTTCGGTGTAGAACAGGTCGGGGGTGTCTGAATCCA
CCTCCAGCCCGTTGCTGGAAACGTGAGCACCAAGGATCGTGCTACGTATC
GGGATCAGTTGTCGCTTCCTGGCATTCGCCGTAGAGCCTCTACGTGATGG
TGCTCTGTT

Coding sequence (CDS) from alignment at Scaffold_376:57679..61937+

>EsuBft2597_2a-0001 ID=EsuBft2597_2a-0001|Name=EsuBft2597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_376:57679..61937+ (Ectocarpus subulatus male Bft15b)
ATGCTGGTCTTGGATTCGCTCTCGCCGGCGACTACAAGTACAACGCCGAA
GACTCTCCTGGCACAATCCGTCTACGCCGTCCTTTCCCGTAGCGTGCAAC
TCATCTTTTCTGCCATTTTTCTGGACGCGGCGCAGGAGAGTGGTGGAGGT
AGACACTGA