EsuBft2832_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2832_3a-0001
Unique Name	EsuBft2832_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:533710..536617 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_007600-tr
ProteomeId	EsuBft2832_3
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	2379
Evalue	6.29e-26
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39HTU@33154\|Opisthokonta,3C3DP@33208\|Metazoa,3DJFY@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2832_3a	EsuBft2832_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 533710..536617 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2832_3a-0001-exon	EsuBft2832_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 533710..535624 +
EsuBft2832_3a-0001-exon	agat-exon-69894	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 536154..536617 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2832_3a-0001-cds	EsuBft2832_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 533710..533964 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2832_3a-0001-exon	agat-three_prime_utr-11330	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 533965..535624 +
EsuBft2832_3a-0001-exon	agat-three_prime_utr-11331	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 536154..536617 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2832_3a-0001	EsuBft2832_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 533710..533964 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:533710..536617+
coding sequence from alignment at Scaffold_373:533710..536617+

spliced messenger RNA

>EsuBft2832_3a-0001 ID=EsuBft2832_3a-0001|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2379bp|location=Sequence derived from alignment at Scaffold_373:533710..536617+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGCTGTACAAGAAGGG
TGACCGTTCGAACTGCAACAACTACAGGGGCATCTCGCTGCTCTCGCATG
TAGGCAAAGTACTCGCCAAGACCATCACCAACCGCCTGAGCGCATTCTGC
GAAGCCAACGAAATCCTCCCGGAGGAACAGTGCGGGTTCCGGCCTGGCCG
ATCCACGGTATGCATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGC
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NNNNNNNNNATTTTATCGCTCTGCTGACCCTTGGGGTCCATTTTATTTTG
GTATACCTTTTCTAGGGAGTGCTCAAAGAGCGGCTCCCATAGCAAGGAGG
GGACCCGTGAATCATCGCGGTGCCCCCTATCAAACGGTTATCTTACCANA
CAGAAAAACCGTCGCTATCACAGCGGATCACAACGGCCGCACTTATTAGA
AAGGCCAAGGCGAAGACAAGAACGCGAGGAACTACGTTCCCCCGGACAAT
GGTCTCCCAACGCCCCCTACTCCTGCCATTGGTACACAGACTGCAACAGT
TATGCGCCTTTCCCCGCATGGAAAACATGGCCTCTCCCAAGTGCTACAAA
CTGCTACAGCTACTCCGGCAAATTCATCAGCTTGCGCCGGTGATACTGCA
GACTGGCCCTGCTAAGGGCCTTGGTGAGGAGGTCCGCGTGTTGCTCCGTT
GTCGGGACACTCTTGACCGAAATTTCCCCCGACCTAAACAATCCGCGGAT
GAAGTGAAACCGCACGTCCATTTGTTTCG

protein sequence of EsuBft2832_3a-0001

>EsuBft2832_3 ID=EsuBft2832_3|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFC
EANEILPEEQCGFRPGRSTVCMLFVVRRLQELGXX

mRNA from alignment at Scaffold_373:533710..536617+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2832_3a-0001 ID=EsuBft2832_3a-0001|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2908bp|location=Sequence derived from alignment at Scaffold_373:533710..536617+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGCTGTACAAGAAGGG
TGACCGTTCGAACTGCAACAACTACAGGGGCATCTCGCTGCTCTCGCATG
TAGGCAAAGTACTCGCCAAGACCATCACCAACCGCCTGAGCGCATTCTGC
GAAGCCAACGAAATCCTCCCGGAGGAACAGTGCGGGTTCCGGCCTGGCCG
ATCCACGGTATGCATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGC
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NNNNNNNNNATTTTATCGCTCTGCTGACCCTTGGGGTCCATTTTATTTTG
GTATACCTTTTCTAGGTACGTTAGCCTGTGACCACGGAAATTGGCCGAGT
CAAGTGATGGATTAGTACGGAGAGATTGAGACAGAAGGAGGTACTGGATA
GAGAGACCGGGATGGTTTTTAATGTGAAGACAACAACAACAACATATAGC
CGACTAGAACGACCGGTGAAGGCTGTGCACAGCAGTAGCCAAGGACCGAG
GTCATCTTAGCAGAGCGACATGATGACCACGGGCTGCTGCTCTAACGTAT
ACGGTGTAGCTACAGATGATCACCAAGGGCATAAGCGGTGCCAATCAGAA
TGCTGGGTTGATGCACAGGTCGTCGATGACGAATGCATAGATAGTCTAGC
TCGACTATGTCTTTGTATAACGACTTTGGAGAGGTAGGACCGTCCGGAAG
CTTGGCTCCGTGCTAAGCCTCGCACACCAGATCACTTTTACTCCCTGTTT
GCGGCCTACGCCACTTATTTATCGGGTGAGACTGTTTTGGTGATGTATTA
ATTTCACGAGAGGTCGACGACCGTCCTTCACACGGACGAAACAGGGAGTG
CTCAAAGAGCGGCTCCCATAGCAAGGAGGGGACCCGTGAATCATCGCGGT
GCCCCCTATCAAACGGTTATCTTACCANACAGAAAAACCGTCGCTATCAC
AGCGGATCACAACGGCCGCACTTATTAGAAAGGCCAAGGCGAAGACAAGA
ACGCGAGGAACTACGTTCCCCCGGACAATGGTCTCCCAACGCCCCCTACT
CCTGCCATTGGTACACAGACTGCAACAGTTATGCGCCTTTCCCCGCATGG
AAAACATGGCCTCTCCCAAGTGCTACAAACTGCTACAGCTACTCCGGCAA
ATTCATCAGCTTGCGCCGGTGATACTGCAGACTGGCCCTGCTAAGGGCCT
TGGTGAGGAGGTCCGCGTGTTGCTCCGTTGTCGGGACACTCTTGACCGAA
ATTTCCCCCGACCTAAACAATCCGCGGATGAAGTGAAACCGCACGTCCAT
TTGTTTCG

Coding sequence (CDS) from alignment at Scaffold_373:533710..536617+

>EsuBft2832_3a-0001 ID=EsuBft2832_3a-0001|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_373:533710..536617+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGCTGTACAAGAAGGG
TGACCGTTCGAACTGCAACAACTACAGGGGCATCTCGCTGCTCTCGCATG
TAGGCAAAGTACTCGCCAAGACCATCACCAACCGCCTGAGCGCATTCTGC
GAAGCCAACGAAATCCTCCCGGAGGAACAGTGCGGGTTCCGGCCTGGCCG
ATCCACGGTATGCATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGC
NNNNN