EsuBft865_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft865_8a-0001
Unique NameEsuBft865_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:342099..342342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft865_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length24
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft865_8aEsuBft865_8aEctocarpus subulatus male Bft15bgeneScaffold_373 342099..342342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_8a-0001-exonEsuBft865_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 342099..342342 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_8a-0001-exonagat-three_prime_utr-22395Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 342099..342186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_8a-0001-cdsEsuBft865_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 342187..342342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_8a-0001EsuBft865_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 342187..342342 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft865_8a-0001 ID=EsuBft865_8a-0001|Name=EsuBft865_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=244bp|location=Sequence derived from alignment at Scaffold_373:342099..342342- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGGAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGAAGGAGAGCGACTGGGTGTCTC
GTCTACGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGTAAATGGGAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGG
TCGAGGACGGGGCGGCATGACTCATGAGGAAATGACACAGGCAG
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protein sequence of EsuBft865_8a-0001

>EsuBft865_8 ID=EsuBft865_8|Name=EsuBft865_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MRMEDSRLPKRMLLGAMAGGVGYRGGKESDWVSRLREDLVAFNMGDEKEG
G
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mRNA from alignment at Scaffold_373:342099..342342-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft865_8a-0001 ID=EsuBft865_8a-0001|Name=EsuBft865_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=244bp|location=Sequence derived from alignment at Scaffold_373:342099..342342- (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGAAGGAGAGCGACTGGGTGTCTC
GTCTACGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGTAAATGGGAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGG
TCGAGGACGGGGCGGCATGACTCATGAGGAAATGACACAGGCAG
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Coding sequence (CDS) from alignment at Scaffold_373:342099..342342-

>EsuBft865_8a-0001 ID=EsuBft865_8a-0001|Name=EsuBft865_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_373:342099..342342- (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGAAGGAGAGCGACTGGGTGTCTC
GTCTACGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGTAA
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