Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZY5 |
| ProteomeId | EsuBft446_5 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 111 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.33e-168 |
| EggNOG OGs | 2EAKV@1|root,2SGUA@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-22_003620.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft446_5a-0001 ID=EsuBft446_5a-0001|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1110bp|location=Sequence derived from alignment at Scaffold_373:246747..250306- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATTGAACATGTGTTCGCGGACCCCCCGCCATATTCCAAAATGCCACA
CACTTCTGCCACGCTATGCAACATTCTCTCCCACACCTTTCAACCTCGAC
TCAAGCAAGGGAGCATGAAGCGCGCCTTCGTGCTTACCGTTGTGCCACTG
GTATCCAGCGCCTCCCTGGCAGCAGCGTTTGTCTGCCCTGCGCCCGCAAC
AGCAACATCTGCCGCCTTCACCCCGAACAGACCAAGATTAGCAGGTGACG
CATCATCATCATCTGCCTCCGCAACTATTGCGCCGCTTCGTCCCGCTCGC
GACCTACACCGCCAGCAACGGCAACGCGGGAGACATCTCGTCGCCTCCCT
GGGCGGAGGCGTCCCGGAAGTCGCGGCCGTCGTGATCTCATCGACCTCGT
ATGTTGTATCCTGGCTCGTCGGTACCCTCGTCGCAGCTTCAATCGCGAAT
TTCCTGCAGGGAAGACCGTACAGCGATCTGGGGCTAACACCAGACAAGAT
CCTGGGCGTTCCCGCTGAGGAGGCCACCGCTGATCACGTGGCCAGGCTAG
GCAAGGCGGGGTTCATGCAGCTCTTCTACGCTAGCCAATGCCCTGTTACC
GGGGACCTGGACGGCGAGTACCGAGCCCGCACGCTCAACATGGGCGTCTT
GCACCCGATCACCGCTATCATCACGCACCGGATATGGGGGCCAGGGAGGT
GGCTCGGGAAGGGCATCCGCACCGGCAGCCGGGAGGGCTACAACCTCTTC
GCTTCCGAGTCGAAGGGCATCGGACTTCCGAGCGACACGCAGCGAGAGCG
CTGCTTCCGGTTCTCCCAGTCCTCCGACAGCGTGTTCGATCGGGGAGTGT
CTTCGGAGCTCGACTACGCCAGAGCGGGCAAGAACGGGCCGCTGTTCGGC
GGCATGCGGGACGAGGTCCGAAAAGTGAACGACAAGCTTTTCATAGGTTT
GGGCTACATACAGGCCTTCGGTGGCAAGTACAACTCGGCTCCATTCGTCA
TGGAGGGGCCGCCCGTGGGCGAATTCTCCAGCCCCGATAAGAGCTTGTAG
GTCATGTGGCCTCAGCAACGGTCAGCGAGGGGCCACAGGAGGAAAGAGCG
TACACTCACC back to topprotein sequence of EsuBft446_5a-0001 >EsuBft446_5 ID=EsuBft446_5|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=349bp
MIEHVFADPPPYSKMPHTSATLCNILSHTFQPRLKQGSMKRAFVLTVVPL
VSSASLAAAFVCPAPATATSAAFTPNRPRLAGDASSSSASATIAPLRPAR
DLHRQQRQRGRHLVASLGGGVPEVAAVVISSTSYVVSWLVGTLVAASIAN
FLQGRPYSDLGLTPDKILGVPAEEATADHVARLGKAGFMQLFYASQCPVT
GDLDGEYRARTLNMGVLHPITAIITHRIWGPGRWLGKGIRTGSREGYNLF
ASESKGIGLPSDTQRERCFRFSQSSDSVFDRGVSSELDYARAGKNGPLFG
GMRDEVRKVNDKLFIGLGYIQAFGGKYNSAPFVMEGPPVGEFSSPDKSL back to topmRNA from alignment at Scaffold_373:246747..250306- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft446_5a-0001 ID=EsuBft446_5a-0001|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3560bp|location=Sequence derived from alignment at Scaffold_373:246747..250306- (Ectocarpus subulatus male Bft15b)
ATGATTGAACATGTGTTCGCGGACCCCCCGCCATATTCCAAAATGCCACA
CACTTCTGCCACGCTATGCAACATTCTCTCCCACACCTTTCAACCTCGAC
TCAAGCAAGGGAGCATGAAGCGCGCCTTCGTGCTTACCGTTGTGCCACTG
GTATCCAGCGCCTCCCTGGCAGCAGCGTTTGTCTGCCCTGCGCCCGCAAC
AGCAACATCTGCCGCCTTCACCCCGAACAGACCAAGATTAGCAGGTGACG
CATCATCATCATCTGCCTCCGCAACTATTGCGCCGCTTCGTCCCGCTCGC
GACCTACACCGCCAGCAACGGCAACGCGGGAGACATCTCGTCGCCTCCCT
GGGCGGAGGCGTCCCGGAAGTCGCGGCCGTCGTGATCTCATCGACCTCGT
ATGTTGTATCCTGGCTCGTCGGTACCCTCGTCGCAGCTTCAATCGCGAAT
TTCCTGCAGGGAAGACCGTACAGCGATCTGGGGCTAACACCAGACAAGAT
CCTGGGCGTTCCCGCTGAGGAGGCCACCGCTGATCACGTGGCCAGGCTAG
GTGCGTGGCTTCCGTGTTGTGCAGTGGCCGCAATTTTGCCGTCGCTCTGG
TTGCGTAGGGATTCTGTCCTCAGGTTGCTCTCTGTCTTTGCTGACTATGA
AGTTCAACGCTGCTTCACCCGAACTTCAGCCAACGGAGGTGCTGTACGTG
GTTCTCCCTACTGGTGTTGCGTCGGTTGCTGTTGGTACCCCTGTTGCCTA
CTCCACGCGAGAATCAGGAATCGCTACAGTATTTTCACAATGCCGGGCTA
CATGGCAGGCTCGACACGGGGGGCATTCCGACATCCGCATATCCTCGCGT
ACATGAGGCGGGAGAGGACGAAGGTGGGGTTACGCATGTCGCCCCACATA
TTTTTTAATTCGAAAGTTCCCCCCACGTGTTTCGACTGCACATACAGTAG
TAGCAACGAACAGAGGGGGGGGGATATCGCTATATGCTGCCCGAGGAACA
GTACAAATACAGGTAGCGTGTCCGTTAACGCTGTAGAGTTGTTGCTAATT
TATCCCGGACGCTTTTCTGTTGATGGAGATGACCTGGCCGTGTAGAAAAA
ACAAAAAAAAAAACGCTGCCCACGTTGCACCCGGCAGATCTTCTACATAG
ACTATAAGTTGTGTTGAGGGTGTGCATGATCCCCAAGAACAAAGATATCC
TCGTCCCTCGCCCCAAGAAAAGCAACCAAGTATCCTGTCCTTCGCCACCC
CTCACACAATAGATGAACACGAAACCCTGGACTGCTACCTAATGGTGTAA
AGCACCGGCCTGCCCAACCCAACTCTCGACACACACCTACCATCAAGGCC
CCGCCCTCAGCTGTTCATTTTCATTACCATCATACCCTTCATACTCTATC
CGCAACGTGTTCATCGACCTTTGTAGGCAAGGCGGGGTTCATGCAGCTCT
TCTACGCTAGCCAATGCCCTGTTACCGGGGACCTGGACGGCGAGTACCGA
GCCCGCACGCTCAACATGGGCGTCTTGCACCCGATCACCGCTATCATCAC
GCACCGGATATGGGGGTGAGCCCCAAGCACCGGCTGCTGCCGTGTGAAAC
CTCGGAGGGTGTGGTCAGCGAGTGTGGTCTGCTTGCTATGTTGTCTGGTG
GTCTCACCTTCTCTGCATCACCTGTGCTCTCGTGCTCTCAAGGGCCGACA
TCACATTTTCAGGGTTGCATTGTGACAGCGAGGGTTGTTCACTTGCATGT
TCCGTTCCCGAGGCCGAATTGGGTTGCGCAAACAAATGTTACGAAGTGGG
GGCTAAGGGTTGAGAAATCGGTCTTAGGTCGGATCGACTTTGGTTGTAAC
TTGTCGCTGTAGAGAGAAGAAAGTAGGGGCGATACAGAGCTTGTACCCAT
CGACGAAGTGCGTGCGCAGATCCTGGTACAAGACGGGAGCGTAAATGTAG
CAACGTACCGAGTGGGCAGATCCCGACACATGCTTGTACGGTAATGACAA
GCACTACGTTTTTTTTTGCTGTATTTTGCCGGAGCGAATTCCACCGCCAC
CACCAACACGGAAGCCTTCCCTTCTTATGTACTGCTTGGTGTTCTCCTGC
TGCAGTCGTACCATTGGAGATAATGGTTCCATGGCAACCCATAACGCGCG
CCCACTGCATAATGTGCCCCCGCCATAAGGCCAGGGAGGTGGCTCGGGAA
GGGCATCCGCACCGGCAGCCGGGAGGGCTACAACCTCTTCGCTTCCGAGT
CGAAGGGCATCGGACTTCCGAGCGACACGCAGCGAGAGCGCTGCTTCCGG
TTCTCCCAGTCCTCCGACAGCGTGTTCGATCGGGGAGTGTCTTCGGAGCT
CGACTACGCCAGAGCGGGCAAGAACGGGCCGCTGTTCGGCGGCATGCGGG
ACGAGGTAAAGCCTTGGCAGACAGAGCGATCGGCTCAAAAAGAGTGGTCG
TTATTGCAAGATTCGCATACAATCGGAGAGAGACTGCCCTTTCGAGGTCT
TACCACAGCGGTCGAAGGGGATGTGTTGAAGTTGTCAGTTTTTTTTTTGG
TACTCGAAAATGTCGATTTTGTTGTTTGGTGCTTACAACTTTTAGTTTTT
TGGTGCTCGAAAGCGGTCAATTCCGCAAATTTAGTGCTGGAGAGCGGTCG
ATGTTGTCTTTTGGTGCCGGCAAGTGGTCGATTTTGTATTTTGGTGCTCG
AAAGCGGTCGATTGTTTTTTGGTCGTCCGACAATACGAAGAAATCGGTGG
TGTATATGCACGAGACGTCTGGGGCAGTTAGGAAAGAGCGCCCCACGTAA
CACGAGTGTGTAGAGATGTCACCGACTGAAGCGAGTGGTGTTAGTTGGTC
TCGCCTTCGTTTTATTGGCGGAAAGATTTATCACCGGAACCTCCATTCAT
TCGGGTGGGGTTCCCCCCGGAATGCGGCGTGTTTCTGCTGAGCAAAGCTT
GAAACCACGGTACACAATTCTTTTTTTCTTACTAACAACGCATATGGCAG
ATCTAAATTCGTACAGCCCGTCCAGTTGCTGCATCGAAGGCGAGCCGCTA
GTGTCGCTCCTGGGGCTTTGTGGACATCTCGTCCGGACCAATACCAATCT
ACAGTAGCGCAATAACCTCGAAGAAACCTCTAAGCGCGCTGTTAAATCGG
ACGGCAAGCACCACAGCAGGGTGGGTAGGAGGCCTCAGGGAGCGGAAGCC
TTCTGTGTGACCACGGGTTGAACCTCTTACCCGGCAGAAATACTGTGTCC
GCAGATTAAATGTGATGAAAAAATCTATCAAAAGTTGCGCAACGAGGATC
AGCTCAAGGTCGCGTTTCTCACCTGTAGCCTGCTGCTTTCCCGTGCTCCG
CATCTCTCTTTCCAGGTCCGAAAAGTGAACGACAAGCTTTTCATAGGTTT
GGGCTACATACAGGCCTTCGGTGGCAAGTACAACTCGGCTCCATTCGTCA
TGGAGGGGCCGCCCGTGGGCGAATTCTCCAGCCCCGATAAGAGCTTGTAG
GTCATGTGGCCTCAGCAACGGTCAGCGAGGGGCCACAGGAGGAAAGAGCG
TACACTCACC back to topCoding sequence (CDS) from alignment at Scaffold_373:246747..250306- >EsuBft446_5a-0001 ID=EsuBft446_5a-0001|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1050bp|location=Sequence derived from alignment at Scaffold_373:246747..250306- (Ectocarpus subulatus male Bft15b)
ATGATTGAACATGTGTTCGCGGACCCCCCGCCATATTCCAAAATGCCACA
CACTTCTGCCACGCTATGCAACATTCTCTCCCACACCTTTCAACCTCGAC
TCAAGCAAGGGAGCATGAAGCGCGCCTTCGTGCTTACCGTTGTGCCACTG
GTATCCAGCGCCTCCCTGGCAGCAGCGTTTGTCTGCCCTGCGCCCGCAAC
AGCAACATCTGCCGCCTTCACCCCGAACAGACCAAGATTAGCAGGTGACG
CATCATCATCATCTGCCTCCGCAACTATTGCGCCGCTTCGTCCCGCTCGC
GACCTACACCGCCAGCAACGGCAACGCGGGAGACATCTCGTCGCCTCCCT
GGGCGGAGGCGTCCCGGAAGTCGCGGCCGTCGTGATCTCATCGACCTCGT
ATGTTGTATCCTGGCTCGTCGGTACCCTCGTCGCAGCTTCAATCGCGAAT
TTCCTGCAGGGAAGACCGTACAGCGATCTGGGGCTAACACCAGACAAGAT
CCTGGGCGTTCCCGCTGAGGAGGCCACCGCTGATCACGTGGCCAGGCTAG
GCAAGGCGGGGTTCATGCAGCTCTTCTACGCTAGCCAATGCCCTGTTACC
GGGGACCTGGACGGCGAGTACCGAGCCCGCACGCTCAACATGGGCGTCTT
GCACCCGATCACCGCTATCATCACGCACCGGATATGGGGGCCAGGGAGGT
GGCTCGGGAAGGGCATCCGCACCGGCAGCCGGGAGGGCTACAACCTCTTC
GCTTCCGAGTCGAAGGGCATCGGACTTCCGAGCGACACGCAGCGAGAGCG
CTGCTTCCGGTTCTCCCAGTCCTCCGACAGCGTGTTCGATCGGGGAGTGT
CTTCGGAGCTCGACTACGCCAGAGCGGGCAAGAACGGGCCGCTGTTCGGC
GGCATGCGGGACGAGGTCCGAAAAGTGAACGACAAGCTTTTCATAGGTTT
GGGCTACATACAGGCCTTCGGTGGCAAGTACAACTCGGCTCCATTCGTCA
TGGAGGGGCCGCCCGTGGGCGAATTCTCCAGCCCCGATAAGAGCTTGTAG back to top
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