EsuBft2609_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2609_2a-0001
Unique Name	EsuBft2609_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:57317..60889 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2609_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	223
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2609_2a	EsuBft2609_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 57317..60889 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2609_2a-0001-exon	agat-exon-63976	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 57317..57580 -
EsuBft2609_2a-0001-exon	EsuBft2609_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 58919..60889 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2609_2a-0001-exon	agat-three_prime_utr-10513	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 57317..57580 -
EsuBft2609_2a-0001-exon	agat-three_prime_utr-10514	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 58919..60355 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2609_2a-0001-cds	EsuBft2609_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 60356..60889 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2609_2a-0001	EsuBft2609_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 60356..60889 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:57317..60889-
coding sequence from alignment at Scaffold_373:57317..60889-

spliced messenger RNA

>EsuBft2609_2a-0001 ID=EsuBft2609_2a-0001|Name=EsuBft2609_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:57317..60889- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTCGCAAAGATGGGGGTGACTCTTCCAGCCAGTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCCTGGCCCTGAGGACGCGAGATA
GATCACTGAGGGATCAGATGAGCCAGGTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGGAAGAAGGAGGAGCCAGCTGGCACCATCGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGTGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAAGCTGTTGGAGAGTCTGGCCCGTCAGGGCGACACAGCAGCGAAGTAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATTGTAGTGCCATGGGAGATGACGGTGCTGCTGTTGGCTTAGGATACGGA
ACCACAACCCCAGCGATGGGTTACCAAAGTGTGAGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAATATTTCAACGAATAGCTAAATGATTTCCGCA
TGGCAGCTAATGGTGCGAACCTGTTGGAACACTTTGAAGAGAGCGGGAGC
TTTGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTTGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACACGTGGAACGATCTGT
CTCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACG
CCCTAGGGAGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATC
TGTACAGCCGTCAGAGGACCCCAAGTCCCTGACATCGACCAAGATCTCTA
GAGGTGAAAACCACCAAAACGCCCTAGATGAGATGCTCCAAACCTCAAAG
TCCTTAACCGAGGAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCT
CTTCTTGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGC
CACACGCGAAGGAGTTGACGCGGACAGGTGTGCTAAAGGAAGAAATGATC
GAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAAGAAAAGGGGC
GAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGC
GGTACTCAAGTAGGAGTCAGGGGCAAGGTTGTGGTCGTGGCGGCGGCCGT
GGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGGGGCGG
CGGCGGTCGCGGCGGCCGCTCAGGCGGATGCGGAGGAGTCGAGGAGAGCG
AGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGAGGACTGTAAG
TTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGG
CTGCACTACCAACGATAAGGACGTCGTGCCTTGGTGTGCGCGCCGTGAGG
GGTGGGGCCACACCAAAGAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGC
AAGTGGTGGAGCATGAGAGCGACGTGGACTCCGTGGAATCCCAGGCGTTT
TGTGCCGTGGCAGTCCCCCCACGCGAGTGTGGTACCGTTGGTGAAGTAGG
TCTAGTGGGGGTTGTAGAACAAGGCCAGGCGATGAACGTGGCCGACACAG
CGGCCACGTGCTCCATGTTCCGANGGGGAGGTGTGGTTCCCCCGGACTGG
AAAGCTGCTGACCCAACGAGGCTATCAAATAAAGCCAACGCTACACACCG
CCTGTGCCGAACTCATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACT
TACCTCAACCAGTACCACCTCGCGCACGGCCATGCCCACAAGACAATGCT
CAGGATCACGGCGGAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGC
TACCCTGTCTTGGCTGTTCGATGTCCAAGGGACAGGTGAAACCTGTTCAG
AAGAGCACGAGCACACGCGCACTGCTACCTCTCGCAGATGACGAAGAGGG
CGGTGGGGGGGAGAGCAGAGCGGATGCATCACGCCAAGGTTGGGGGGGGG
AGAGAGACATAGAGAATGAGTCCGACCTCGACGTGATGGAGGCTCGTGGG
CCAGGGCAAGGTACGCCGTTTGTGCGCGAGGAGGCGCCGACGGCACCCGG
CAACGGGATTCCGGGGGACGGAGGCAGCGTTCCCCCGTCGCCCCCTTCGG
GAAGGGGCGACTTCGGCGAAGGCAGTAACAGTCCC

protein sequence of EsuBft2609_2a-0001

>EsuBft2609_2 ID=EsuBft2609_2|Name=EsuBft2609_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=177bp
MSGRKDGGDSSSQSAAEDRKRSREELLALRTRDRSLRDQMSQVMSLVEDT
MKARKKEEPAGTIEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLR
EAVGESGPSGRHSSEVGGFVPQEVRVAAAHNQDYCSAMGDDGAAVGLGYG
TTTPAMGYQSVRYTSPPFSGKSKYFNE

mRNA from alignment at Scaffold_373:57317..60889-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2609_2a-0001 ID=EsuBft2609_2a-0001|Name=EsuBft2609_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3573bp|location=Sequence derived from alignment at Scaffold_373:57317..60889- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCTTCCAGCCAGTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCCTGGCCCTGAGGACGCGAGATA
GATCACTGAGGGATCAGATGAGCCAGGTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGGAAGAAGGAGGAGCCAGCTGGCACCATCGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGTGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAAGCTGTTGGAGAGTCTGGCCCGTCAGGGCGACACAGCAGCGAAGTAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATTGTAGTGCCATGGGAGATGACGGTGCTGCTGTTGGCTTAGGATACGGA
ACCACAACCCCAGCGATGGGTTACCAAAGTGTGAGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAATATTTCAACGAATAGCTAAATGATTTCCGCA
TGGCAGCTAATGGTGCGAACCTGTTGGAACACTTTGAAGAGAGCGGGAGC
TTTGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTTGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACACGTGGAACGATCTGT
CTCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACG
CCCTAGGGAGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATC
TGTACAGCCGTCAGAGGACCCCAAGTCCCTGACATCGACCAAGATCTCTA
GAGGTGAAAACCACCAAAACGCCCTAGATGAGATGCTCCAAACCTCAAAG
TCCTTAACCGAGGAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCT
CTTCTTGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGC
CACACGCGAAGGAGTTGACGCGGACAGGTGTGCTAAAGGAAGAAATGATC
GAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAAGAAAAGGGGC
GAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGC
GGTACTCAAGTAGGAGTCAGGGGCAAGGTTGTGGTCGTGGCGGCGGCCGT
GGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGGGGCGG
CGGCGGTCGCGGCGGCCGCTCAGGCGGATGCGGAGGAGTCGAGGAGAGCG
AGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGAGGACTGTAAG
TTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGG
CTGCACTACCAACGATAAGGACGTCGTGCCTTGGTGTGCGCGCCGTGAGG
GGTGGGGCCACACCAAAGAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGC
AAGTGGTGGAGCATGAGAGCGACGTGGACTCCGTGGAATCCCAGGCGTTT
TGTGCCGTGGCAGTCCCCCCACGCGAGTGTGGTACCGTTGGTGAAGTAGG
TCTAGTGGGGGTTGTAGAACAAGGCCAGGCGATGAACGTGGCCGACACAG
CGGCCACGTGCTCCATGTTCCGANGGGGAGGTGTGGTTCCCCCGGACTGG
AAAGCTGCTGACCCAACGAGGCTATCAAATAAAGCCAACGCTACACACCG
CCTGTGCCGAACTCATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACT
TACCTCAACCAGTACCACCTCGCGCACGGCCATGCCCACAAGACAATGCT
CAGGATCACGGCGGAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGC
TACCCTGTCTTGGCTGTTCGATGTCCAAGGGACAGGTGAAACCTGTTCAG
AAGAGCACGAGCACACGCGCAGTTAAGAAGTTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTGAGGTTCATATCGCACGTACCGACGGTGGCGGCGAGT
TCCAGGGGCAGTTTGCGGAAGTTTGCCGAAGACACGGCATCAAACAAGAG
TTCACCCCCCCTCACACCGCAGAATACAACGGTGTAGCGGAGAGAGCGCT
AGGATTGATCACTGATGCCGCGCTTTCGTCACGCATCCAAGGGACGCAAC
GGTTCCCCGACGCACCGAACCACCCCGGGTTGTGGGTCGAGCCCCATTTC
GTGTGCATGCCATCAGCTGAACTGCACCGCCACTAAATTAAACGAGAGAG
ACANGCAGCGGTTGGGTTTGAGAAGTTCTTGGCGGACTACCGAACGAAAG
GGGCTTCGTGCGAGGTTTATATCGCACGTACCGACGGTGGCGGCGAGTTC
CAGGGGCAGTTTGCGGAAGTTTGCCGAAGACACGGCATCAAACAAGAGTT
CACCCCCCCTCACACCGCAGAATACAACGGTGTAGCGGAGAGAGCGCTAG
GATTGATCACTGATGCCGCGCTTTCGTCACGCATCCAAGGGACGCAACGG
TTCCCCGACGCACCGAACCACCCCGGGTTGTGGGTCGAGCCCCATTTCGT
GTGCATGCCATCAGCTGAACTGCACCGCCACTAAATTAAACGAGAGAGAC
AAATCCGCCTACGAGATGTTCCACGACTCCACCGCCTGTTGGGTCTACAT
ACCCGTTTCTCAAACCAGCCGTGTTCGAGTCGAGAAGAAAAGCAAAGTCG
CAACCCAAGGGTAAAAAAGGATGGTACCTTGGTCCTGTCCACAATCACCC
CTGTGACTGCGTTCGCATGCTAACCGAAGCTGGAACCCTAATCACCACCC
GCATTTCCACCTGGCGCCACGTGCCCGCTGCATCGCCCGCTCCCCCGCAG
CTGCTACCTCTCGCAGATGACGAAGAGGGCGGTGGGGGGGAGAGCAGAGC
GGATGCATCACGCCAAGGTTGGGGGGGGGAGAGAGACATAGAGAATGAGT
CCGACCTCGACGTGATGGAGGCTCGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAGGATGGTACCTTGGTCCTGCCCA
CAATCACCCCCGTGACTGCGTTCGCATGCTAACCGAAGCTGGAACCCTAA
TCACCACCCGCATTTCCACCTGGCGCCACGTGCCCGCTGCATCGCCCGCT
CCCCCGCAGCTGCTACCTCTCGCAGATGACGAAGAGGGCGGTGGGGGGGA
GAGCAGAGCGGATGCATCACGCCAAGGTTGGGGGGGGGAGAGAGACATAG
AGAATGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGGT
ACGCCGTTTGTGCGCGAGGAGGCGCCGACGGCACCCGGCAACGGGATTCC
GGGGGACGGAGGCAGCGTTCCCCCGTCGCCCCCTTCGGGAAGGGGCGACT
TCGGCGAAGGCAGTAACAGTCCC

Coding sequence (CDS) from alignment at Scaffold_373:57317..60889-

>EsuBft2609_2a-0001 ID=EsuBft2609_2a-0001|Name=EsuBft2609_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=534bp|location=Sequence derived from alignment at Scaffold_373:57317..60889- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCTTCCAGCCAGTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCCTGGCCCTGAGGACGCGAGATA
GATCACTGAGGGATCAGATGAGCCAGGTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGGAAGAAGGAGGAGCCAGCTGGCACCATCGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGTGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAAGCTGTTGGAGAGTCTGGCCCGTCAGGGCGACACAGCAGCGAAGTAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATTGTAGTGCCATGGGAGATGACGGTGCTGCTGTTGGCTTAGGATACGGA
ACCACAACCCCAGCGATGGGTTACCAAAGTGTGAGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAATATTTCAACGAATAG