EsuBft2609_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2609_3a-0001
Unique NameEsuBft2609_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:56369..57240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo130685
ProteomeIdEsuBft2609_3
Protein domainsIPR013103
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl4776|Peronosporales
Length872
Hectar predicted targeting categoryother localisation
Evalue4.17e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_3aEsuBft2609_3aEctocarpus subulatus male Bft15bgeneScaffold_373 56369..57240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_3a-0001-exonEsuBft2609_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 56369..57240 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_3a-0001-exonagat-three_prime_utr-10515Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 56369..56439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_3a-0001-cdsEsuBft2609_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 56440..57054 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_3a-0001-exonagat-five_prime_utr-6741Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 57055..57240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_3a-0001EsuBft2609_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 56440..57054 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2609_3a-0001 ID=EsuBft2609_3a-0001|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=872bp|location=Sequence derived from alignment at Scaffold_373:56369..57240- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGGACGGCGGTAGCGGTTTCTGATTCCGGCGACTCCGAGAACCTCGA
GGAGTTGAAGTATGATCCAGCCGGCGACCGCTAGCCCCGAGGGCAAGAAG
GGAAGAAACTCTTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGG
CTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTGCCGG
GGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCATTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTGTTAAGGACTACAGCTAC
AACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGG
CGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGAC
CCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGA
AGCAGTACCGATGACGTACAAGTATGTGATGTGTTTCAAGTACAAGATTT
CCTGGGAGGCGGCCATGACGAAAGAGATAGATGGCCACGACAAGACTGGA
ACCTTGACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTC
AAAGTGGTTGTTCTCTTGGAAGACGAATGAGAAGGGCCTAATGGTCGACT
TCAAGGCCCGTATGGTTGCGCGGGGTTCCTCTCAAATCCCGGCATCGACT
TCCACCACTCATCCTCAGCGTGCCTGTCTGCAGCGTCTATCAAGACGGTG
ATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGTTCACTGGGATGTGAA
GCAAGCGTACATCCACGCTAAG
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protein sequence of EsuBft2609_3a-0001

>EsuBft2609_3 ID=EsuBft2609_3|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MQGAGEMPGPGETPDPEEALLATILETGGTGIVKDYSYNSLVKEQWDEEQ
TRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSITSPIGQK
PSDVEAVPMTYKYVMCFKYKISWEAAMTKEIDGHDKTGTLTKVKELPEGR
KAIGSKWLFSWKTNEKGLMVDFKARMVARGSSQIPASTSTTHPQRACLQR
LSRR
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mRNA from alignment at Scaffold_373:56369..57240-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2609_3a-0001 ID=EsuBft2609_3a-0001|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=872bp|location=Sequence derived from alignment at Scaffold_373:56369..57240- (Ectocarpus subulatus male Bft15b)
GTGTGGACGGCGGTAGCGGTTTCTGATTCCGGCGACTCCGAGAACCTCGA
GGAGTTGAAGTATGATCCAGCCGGCGACCGCTAGCCCCGAGGGCAAGAAG
GGAAGAAACTCTTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGG
CTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTGCCGG
GGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCATTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTGTTAAGGACTACAGCTAC
AACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGG
CGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGAC
CCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGA
AGCAGTACCGATGACGTACAAGTATGTGATGTGTTTCAAGTACAAGATTT
CCTGGGAGGCGGCCATGACGAAAGAGATAGATGGCCACGACAAGACTGGA
ACCTTGACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTC
AAAGTGGTTGTTCTCTTGGAAGACGAATGAGAAGGGCCTAATGGTCGACT
TCAAGGCCCGTATGGTTGCGCGGGGTTCCTCTCAAATCCCGGCATCGACT
TCCACCACTCATCCTCAGCGTGCCTGTCTGCAGCGTCTATCAAGACGGTG
ATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGTTCACTGGGATGTGAA
GCAAGCGTACATCCACGCTAAG
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Coding sequence (CDS) from alignment at Scaffold_373:56369..57240-

>EsuBft2609_3a-0001 ID=EsuBft2609_3a-0001|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_373:56369..57240- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGA
AGAGGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTTA
AGGACTACAGCTACAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAG
ACACGCCGTATGGAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAG
CCGAGTGATGTGGAAGCAGTACCGATGACGTACAAGTATGTGATGTGTTT
CAAGTACAAGATTTCCTGGGAGGCGGCCATGACGAAAGAGATAGATGGCC
ACGACAAGACTGGAACCTTGACCAAGGTCAAGGAGCTGCCCGAGGGGCGG
AAGGCCATAGGTTCAAAGTGGTTGTTCTCTTGGAAGACGAATGAGAAGGG
CCTAATGGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTCCTCTCAAA
TCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGCCTGTCTGCAGCGT
CTATCAAGACGGTGA
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