EsuBft1167_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1167_13a-0001
Unique Name	EsuBft1167_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:194544..195712 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo140614
ProteomeId	EsuBft1167_13
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	1169
Hectar predicted targeting category	other localisation
Evalue	7.67e-35
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHHC@4776\|Peronosporales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_13a	EsuBft1167_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 194544..195712 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_13a-0001-exon	EsuBft1167_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 194544..195712 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_13a-0001-cds	EsuBft1167_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 194544..195251 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_13a-0001-exon	agat-three_prime_utr-1599	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 195252..195712 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_13a-0001	EsuBft1167_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 194544..195251 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:194544..195712+
coding sequence from alignment at Scaffold_370:194544..195712+

spliced messenger RNA

>EsuBft1167_13a-0001 ID=EsuBft1167_13a-0001|Name=EsuBft1167_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1169bp|location=Sequence derived from alignment at Scaffold_370:194544..195712+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCGGTGAAGAATCTTGGTGACTTGAGGTGGTACTCTGGATATTT
TCATGAGAGGGATTGGGATGCAGGGACTGTGAAGATCTCGCAGCAGACGT
ACGCTGAAGAGTTGGGGATGGAGTTTGGGGTGGAGTACGGGAAGGAAGTT
CCTTTTCCTGTAGGGTTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGT
GGTATCATGGCCTTTTCGCGAGCTGATGGGATCACTGATGTGGCTGGCAA
CGCAAACGAGGCCAGATATCGCGAATGCAGTACGAGCGGTAGCACGGTAC
TGTGCTTCTCCCAAAGAAATTGATTGCAGAGCAGGTCTTGGTATTTTGGG
GTATGTGGTAAGGACTAGTGACTTGGGGATTACATTCAGGAGGGGTAGTG
TAGCAGGGTTGAGCATGGAGGTGTTCGCAGACGCAGATTATGCAAGCAAG
GCTGCCGATAGGAGGTCTGTGTCAGGAGGCTTGGTGATGTGTGGGGGGGG
ATGTATTCCATGGTTTTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGA
CAGAGGCGGAGTATGTCTCCCTTGCGGATGTGATGAAGGACGTGTTATTT
CTGAGGCAGGTATGGCGTTGCATGTTGCCAGAAGCAGGTATGCCGTGTAT
TCCGGTGTTCGAGGATAACGAGGGGGCTATTCAATTGGCGCAGAACCCGA
TTAGCTAGAGTAACTCGAAGCACATCGACGTAAGGCACCACTGTATCAGG
GAACTGGTAGGCAGGAAGGAGATTTCGATTTTTCACGTGGAATCAGCGTA
TCAACATGCTGACTTCCTCACGAAGGCACTTCACGTCGGAGATTTTGAGT
TTCATCGTAATTTCGTGATGAGTGTGGGACAGGAACGGTAGATTTGGATA
TACTTGTATTTGATCAAAGAACTAGGGTGGCATTGTTTTACATTTTTGCG
TATGGTCTTCTCAATCAATGGTGCTCAAGGATGGGGGGCAATTGGATCGC
TATGATTATCGAAGACCTACAACTGGAATGATCGGGGATGGAAATATATT
TCTAGCCCAGAAGGCTATTGTTGCAGATTTGAGTTGTGTTTTGGATAATT
TCTTGTGTTTTGGAGTTACTGAAAGATCATGAAGACATGGCATAGTCACA
AGCAGGGGGGCTGATAGAT

protein sequence of EsuBft1167_13a-0001

>EsuBft1167_13 ID=EsuBft1167_13|Name=EsuBft1167_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=235bp
MVPVKNLGDLRWYSGYFHERDWDAGTVKISQQTYAEELGMEFGVEYGKEV
PFPVGLKLSEFDQDEEVVSWPFRELMGSLMWLATQTRPDIANAVRAVARY
CASPKEIDCRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASK
AADRRSVSGGLVMCGGGCIPWFSRTQKCVTLSTTEAEYVSLADVMKDVLF
LRQVWRCMLPEAGMPCIPVFEDNEGAIQLAQNPIS

mRNA from alignment at Scaffold_370:194544..195712+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1167_13a-0001 ID=EsuBft1167_13a-0001|Name=EsuBft1167_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1169bp|location=Sequence derived from alignment at Scaffold_370:194544..195712+ (Ectocarpus subulatus male Bft15b)
ATGGTACCGGTGAAGAATCTTGGTGACTTGAGGTGGTACTCTGGATATTT
TCATGAGAGGGATTGGGATGCAGGGACTGTGAAGATCTCGCAGCAGACGT
ACGCTGAAGAGTTGGGGATGGAGTTTGGGGTGGAGTACGGGAAGGAAGTT
CCTTTTCCTGTAGGGTTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGT
GGTATCATGGCCTTTTCGCGAGCTGATGGGATCACTGATGTGGCTGGCAA
CGCAAACGAGGCCAGATATCGCGAATGCAGTACGAGCGGTAGCACGGTAC
TGTGCTTCTCCCAAAGAAATTGATTGCAGAGCAGGTCTTGGTATTTTGGG
GTATGTGGTAAGGACTAGTGACTTGGGGATTACATTCAGGAGGGGTAGTG
TAGCAGGGTTGAGCATGGAGGTGTTCGCAGACGCAGATTATGCAAGCAAG
GCTGCCGATAGGAGGTCTGTGTCAGGAGGCTTGGTGATGTGTGGGGGGGG
ATGTATTCCATGGTTTTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGA
CAGAGGCGGAGTATGTCTCCCTTGCGGATGTGATGAAGGACGTGTTATTT
CTGAGGCAGGTATGGCGTTGCATGTTGCCAGAAGCAGGTATGCCGTGTAT
TCCGGTGTTCGAGGATAACGAGGGGGCTATTCAATTGGCGCAGAACCCGA
TTAGCTAGAGTAACTCGAAGCACATCGACGTAAGGCACCACTGTATCAGG
GAACTGGTAGGCAGGAAGGAGATTTCGATTTTTCACGTGGAATCAGCGTA
TCAACATGCTGACTTCCTCACGAAGGCACTTCACGTCGGAGATTTTGAGT
TTCATCGTAATTTCGTGATGAGTGTGGGACAGGAACGGTAGATTTGGATA
TACTTGTATTTGATCAAAGAACTAGGGTGGCATTGTTTTACATTTTTGCG
TATGGTCTTCTCAATCAATGGTGCTCAAGGATGGGGGGCAATTGGATCGC
TATGATTATCGAAGACCTACAACTGGAATGATCGGGGATGGAAATATATT
TCTAGCCCAGAAGGCTATTGTTGCAGATTTGAGTTGTGTTTTGGATAATT
TCTTGTGTTTTGGAGTTACTGAAAGATCATGAAGACATGGCATAGTCACA
AGCAGGGGGGCTGATAGAT

Coding sequence (CDS) from alignment at Scaffold_370:194544..195712+

>EsuBft1167_13a-0001 ID=EsuBft1167_13a-0001|Name=EsuBft1167_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=708bp|location=Sequence derived from alignment at Scaffold_370:194544..195712+ (Ectocarpus subulatus male Bft15b)
ATGGTACCGGTGAAGAATCTTGGTGACTTGAGGTGGTACTCTGGATATTT
TCATGAGAGGGATTGGGATGCAGGGACTGTGAAGATCTCGCAGCAGACGT
ACGCTGAAGAGTTGGGGATGGAGTTTGGGGTGGAGTACGGGAAGGAAGTT
CCTTTTCCTGTAGGGTTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGT
GGTATCATGGCCTTTTCGCGAGCTGATGGGATCACTGATGTGGCTGGCAA
CGCAAACGAGGCCAGATATCGCGAATGCAGTACGAGCGGTAGCACGGTAC
TGTGCTTCTCCCAAAGAAATTGATTGCAGAGCAGGTCTTGGTATTTTGGG
GTATGTGGTAAGGACTAGTGACTTGGGGATTACATTCAGGAGGGGTAGTG
TAGCAGGGTTGAGCATGGAGGTGTTCGCAGACGCAGATTATGCAAGCAAG
GCTGCCGATAGGAGGTCTGTGTCAGGAGGCTTGGTGATGTGTGGGGGGGG
ATGTATTCCATGGTTTTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGA
CAGAGGCGGAGTATGTCTCCCTTGCGGATGTGATGAAGGACGTGTTATTT
CTGAGGCAGGTATGGCGTTGCATGTTGCCAGAAGCAGGTATGCCGTGTAT
TCCGGTGTTCGAGGATAACGAGGGGGCTATTCAATTGGCGCAGAACCCGA
TTAGCTAG