EsuBft2787_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2787_2a-0001
Unique NameEsuBft2787_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:299626..304430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FWA5
ProteomeIdEsuBft2787_2
Protein domainsIPR002123
Protein domainsSSF69593
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteglycerol-3-phosphate chloroplastic os:cucumis sativus pe:2 sv:1 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1607
Hectar predicted targeting categoryother localisation
Evalue3.18e-137
EggNOG OGs28J58@1|root,2QRHE@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameGPAT
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K00630
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
GOsGO:0003674,GO:0003824,GO:0004366,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576
EC2.3.1.15
Descriptionsn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity
COG categoryI
BiGG ReactioniRC1080.CRv4_Au5_s2_g9657_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Cross References
External references for this mRNA
DatabaseAccession
GO0016746
GO0006629
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_2aEsuBft2787_2aEctocarpus subulatus male Bft15bgeneScaffold_360 299626..304430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_2a-0001EsuBft2787_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 299626..303771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_2a-0001-exonagat-exon-105126Ectocarpus subulatus male Bft15bexonScaffold_360 299626..299670 +
EsuBft2787_2a-0001-exonagat-exon-105124Ectocarpus subulatus male Bft15bexonScaffold_360 299874..299900 +
EsuBft2787_2a-0001-exonagat-exon-105127Ectocarpus subulatus male Bft15bexonScaffold_360 299995..300012 +
EsuBft2787_2a-0001-exonEsuBft2787_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 300087..300296 +
EsuBft2787_2a-0001-exonagat-exon-105125Ectocarpus subulatus male Bft15bexonScaffold_360 300851..300996 +
EsuBft2787_2a-0001-exonagat-exon-105128Ectocarpus subulatus male Bft15bexonScaffold_360 301637..301733 +
EsuBft2787_2a-0001-exonagat-exon-105123Ectocarpus subulatus male Bft15bexonScaffold_360 302615..302833 +
EsuBft2787_2a-0001-exonagat-exon-105122Ectocarpus subulatus male Bft15bexonScaffold_360 303586..304430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_2a-0001-cdsEsuBft2787_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 299626..299670 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_2a-0001-exonagat-three_prime_utr-11149Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 303772..304430 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2787_2a-0001 ID=EsuBft2787_2a-0001|Name=EsuBft2787_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1607bp|location=Sequence derived from alignment at Scaffold_360:299626..304430+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATTACATTCTGCTACGAATTGGCGCGACTGCTTTTTCGCGGCGCC
ACCCCACGGCGTTTCGCGCTTGGGGTGCATGATCATGACGATGGTGCCCG
AGAACATGAAGAAGCCGTACGAGTTCGAGCTGTTCCACGAATCAACGAGG
GACCCGGTGGACCTCTACACGTGGGGGAACGACTTCTTCCGTCCCCTCAT
CGAGCTGGACAACTCGAGGCTCGAGGGCAAGGAGAACTTGGAGAAGATCG
CCGAGTACCTGGCCAAGGGAGAGAACGTCTTCCTCATGTCTAACCACCAG
ACGGAAGCCGATCCCCAGGTGATCAGCCTCCTGATGGAGCGTGAGGGGTA
CGGGGACGAGGCGTCGCGACTGATCAACGTGGCGGGGCACCGCGTGACCA
CGGACCCGTTGGCGATCCCCTTCAGCATGGGCAGAAACCTTTTCTGCATT
TTCTCCAAGAAGTACATGGAGACTCCCCCGGAACTCAAGGGCGAGAAGCA
GAAGCACAACGTCCGTACCTTGAAAAAGATGGCGGAGATGATGAGCGAAG
GGGGGCAATTCATCTGGGTGGCACCTAGCGGGGGCCGAGACAGGCCGGAT
CCGGAGACGGGCAAGTTCGTCGTGTCCCCTTACGACCCCAAGTCGGTGGA
GGTGTTCCGGCTTATGGCCGCAAAGGCCATGGGGAGGAACAAGACGGGGC
CGGTGACGCACTTCTTTCCCTTCGCGATGTGGACCAACAAGCTTGTGCCC
CCTCCGGACCAGGTCAACAAGGAGCTCGGCGAGCGGCGGCAGGCCGACAG
GGGCCCCGCAAGCGTCGCCTTCGGGGAAGAGGTGCTGCCGCCGCCCGGGG
AAACCTTGAAGCAGGCGGAGTTCGTCGCGATCATGGAGGAGAGAGTTCAG
GCGGAGTACGCCAAGCTCGACGACTTCCATGAATCCAAGCAGAAATGATC
GAGGGTTGGATTCGATTTGCACGGGTTGGGCTGGGCGTCGTCTCTCATCA
CGAGGCCGGTTGACCCCCCTCAGGAACAAGTAAAAACTATGTTCCCGCTT
GGTATGGTTGATATAGGCGGCGGTTGTGGCCGATTGTAGGTGTGTTGGCT
GCTGGTCAGCGTGCTGGTTTCGTTTTCTTTTTTGTCGTATCGCAAAGCGG
AGACGGGAGCTACTTCCACCCCATCGGGGGGAGATGTGTGGTACGTACGT
GAGGTGTCCGTTGTGTATAGAGAGGCCCGATGCCGTCTGACCGTGGGCAG
GGGAAGGCAGAGAAGCGGCGCATCTATGTGCGGGCTTATTTGCGCGCGTT
GCTGTTTGCTCCAGCTGTTTTGAGAGGCTTGTGTCCGGAGTGGCAACCTT
CGTCATACGCGCGCGTTGGAACGGTGACATGCCTGCGTCGTTTTTTTTTG
CGAGGCCCAGTTTCGGTTCGTTTAGAGCGTATATAGATGTTGACGCAGGC
GTGGTGTTGTCCTCCAGCTGTACGTGCACCGGCACGTGCCCTGGCTGAAA
ATATATAGGTAAACCGGCACTAGAGAGAGCCACCGGCAGAACTGACGAAA
CTGGGCGTTTCCGACCCTCCCTGTGCTGAGCGATTTCGTGGGCACTATGC
CGCTGCT
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protein sequence of EsuBft2787_2a-0001

>EsuBft2787_2 ID=EsuBft2787_2|Name=EsuBft2787_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=315bp
MRLHSATNWRDCFFAAPPHGVSRLGCMIMTMVPENMKKPYEFELFHESTR
DPVDLYTWGNDFFRPLIELDNSRLEGKENLEKIAEYLAKGENVFLMSNHQ
TEADPQVISLLMEREGYGDEASRLINVAGHRVTTDPLAIPFSMGRNLFCI
FSKKYMETPPELKGEKQKHNVRTLKKMAEMMSEGGQFIWVAPSGGRDRPD
PETGKFVVSPYDPKSVEVFRLMAAKAMGRNKTGPVTHFFPFAMWTNKLVP
PPDQVNKELGERRQADRGPASVAFGEEVLPPPGETLKQAEFVAIMEERVQ
AEYAKLDDFHESKQK
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mRNA from alignment at Scaffold_360:299626..304430+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2787_2a-0001 ID=EsuBft2787_2a-0001|Name=EsuBft2787_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4805bp|location=Sequence derived from alignment at Scaffold_360:299626..304430+ (Ectocarpus subulatus male Bft15b)
ATGAGATTACATTCTGCTACGAATTGGCGCGACTGCTTTTTCGCGGTGCG
GTCAACGTGTGCACGAACGAAAGGCTTCCGAGAATCGCGTCGAAAGTTGG
AGAAATGTGAGCATCTCACTAAAAGCCAAGTAGCGATTTTTCTCCACTCA
ACCACGCCATCAAACACTACGAAGCAGTCATAAGCATAGAATGATGTGCG
CAAGGTGCCTTGAGTCCTCCCCTACAAAAGCGGTTGGTGGCTACATAGGC
GCCACCCCACGGCGTTTCGCGCTTGGTGCTCTTCATGGGTGGTCCCTCGC
GGAAACCCAGCTTGATTCATCGTGGCCTTTGTCGGGAAGATCGTGTCTGT
AAGTTGAAAGGCTTTGAAGGGGTGCATGATCATGACGGTGAGTACCACCC
ACCCACCCACCCACCCACCCCCCGGCCATTTTTTCATTCTCGGCCTTGCG
CATCTCCGTAGATGGTGCCCGAGAACATGAAGAAGCCGTACGAGTTCGAG
CTGTTCCACGAATCAACGAGGGACCCGGTGGACCTCTACACGTGGGGGAA
CGACTTCTTCCGTCCCCTCATCGAGCTGGACAACTCGAGGCTCGAGGGCA
AGGAGAACTTGGAGAAGATCGCCGAGTACCTGGCCAAGGGAGAGAACGTC
TTCCTCATGTCTAACCACCAGGTGGGTGGGTGTGTTTAGTGCTGGGTTGT
AGGTGTGGTTTATGTTGTTGTTGTTGTTGTTGTTTGCTCTAGGAGGCCAG
CTACTTGATGTGTTGTTGCTGTTGTTTGCTCTGTGGGATATGTGCTGTAC
TCGATTCACTGCTTCTGAGAAGCTGGTCGTTTATGTACCCTCCGTTTTCT
GTTGGCTTCGTACCTGTTTTTTTGTTGCCTTTGTCGTTGTTTTGACGGAC
ACACGCCAAGACTTTAAGGATTTTGTCGTCTCGTATCGTTCATCCGTTGC
TGTGTCTATCACCTTCGGGCTTTTAGTTCTCCTCGTGGTGTTGTTTTTTG
TTTTTGCTGCTACCGCTGCTGCTACTGCTGTCGTTCAAATGTTGATGGTC
GGGACGGAAGCAACAGCAAAGAGCTAGCGTCTAACGAAATTTTTCCATCC
AGAGATTTTTTTTTTCCTCGTTGCATCCATGCTCCTCTATTTGGCTGGGT
CTTGTTCATATCTGTCATTCCCCGATTTCCCTCCCTATTCTTTTTTTCGC
CCGCGGTTTGTTGTTAACGGTGCAGACGGAAGCCGATCCCCAGGTGATCA
GCCTCCTGATGGAGCGTGAGGGGTACGGGGACGAGGCGTCGCGACTGATC
AACGTGGCGGGGCACCGCGTGACCACGGACCCGTTGGCGATCCCCTTCAG
CATGGGCAGAAACCTTTTCTGGTGAGAGTAGGCGAGTTGGTGGCGAGGAA
GAGAGAGAGAGAGAGACAAACAGACAGACAGGGACAGGGACAGAGACAGA
GACAGAAGATATACTTCCCTGCATGTAATGTTATGCGTAACACGAAGAGA
GATGGACATACAGACATACGGAGCGAGAGGGGCTATGTAGCTAAATGTGT
GGTGGGTACGGGTCACAGCCAACCCCCAAAGGGGTGGGCACCGGTCAACG
TCCGCGAGAAAACAATGAGGCGAGGAACGAAATGGGTGGACTGATCGCCT
GCCCCGCCCCGACTCTTAAGTGGAAGCACGGGGAGGGGTGGGTGTGTGTG
TGCGGAAAGCGGGAATCGTCCTCGACGAACGTTGGGGAGTTGGAACCTTA
ATAAGGGCACCTCCATACGCGGGTCGTTCCTGATGTTAATGACAAGATGC
GATAATAGAGCAGAGCACAGCAAATCGTAAATCACATTTGCGGATTCGAT
CCGCTTATTGGCTGGGCGACTCGAACCATCTCTCAATCCCTCCGTTCCTC
GCTCTGCCTGCCCCGCCCCCCCGCTCACCTGCTCTGGTTGGTTGTGCCCA
CTGTTGAAACGAAACCCTCTGGTTTTATTTGATTCGTTTGTCGTGATGGG
CACAACGGCAGCATTTTCTCCAAGAAGTACATGGAGACTCCCCCGGAACT
CAAGGGCGAGAAGCAGAAGCACAACGTCCGTACCTTGAAAAAGATGGCGG
AGATGATGGTGAGGCTACAATATGCACACCTGTCGTCGAACACAAGTCGC
ATATATTGATGCGCTCCAGGCGCAGGAATAATACAGACTTGGAAGTACAG
AGTGCGAAGACGTTTCTCCTATGCACTTGGTCTGCAACATGCTTCCCACC
AATTCCCATGTATCCCAAGGGGTTGGCTGGTGACCTGTTTCTTGTCGCGT
CTTGGCTGCTGCTGCACTCGCTGCTTGGTGCGGTGTCCTGCTGCGCGCTA
TTTGCAGCCAGAAATGGTTGCCCTTTAGGGAGAGAACAAGTTCCTCCTCA
GTCTTTACACGTTTTTTTGTTCAAGATTTGTTTTTGTTGTTGGAATGCGA
TCTATGCCATGGCTTTCAACCGGCCGAAGGTAAGGGGTCAAGGTAAAAAG
GGGTCAAGGTAAAAAGCTCTATTTTTGTTGTTCTCTGCCAACCGGCAGGA
GAAGTTGAAATTCCGGTCTATCTGGGGGCTATTCGTGACTATTGTGTATG
TTACTGCGTGGAAATAGCTCCAAACTACAATGTGGATATGATTCAGTTTG
TCAGTAATAGGGTCTGTGAGTGCTCCGACTCTTCAAACCCAGCCAAGTGG
TACATGCCACTACATACATAGCGGTGACAGAGAAGACGAACCGCAAATAC
GCAACACCCAACGAGTACCGCCCCTCCCTCCATCTGAACCCCCACCCCCA
ATGAGTCACCTTTGGTACATTGGCCGTCGTTGGCGGTCCTGTGGAAACAC
TGCTCCGTCTTCTCGAGGACGCGTGGTCAATGTTCTAAACCGCTAAGGCA
TGAAAAACATAAAATCCCCCCTCCCTCCCCCCCCAAAATACCCAATAACC
AACGAGCTCCCCCCCCTCCCTCCCCCCGGAACGTTGCAGAGCGAAGGGGG
GCAATTCATCTGGGTGGCACCTAGCGGGGGCCGAGACAGGCCGGATCCGG
AGACGGGCAAGTTCGTCGTGTCCCCTTACGACCCCAAGTCGGTGGAGGTG
TTCCGGCTTATGGCCGCAAAGGCCATGGGGAGGAACAAGACGGGGCCGGT
GACGCACTTCTTTCCCTTCGCGATGTGGACCAACAAGCTTGTGCCCCCTC
CGGACCAGGTCGGTTTTTTTGTGTTTGTTGTGTGTAATGATTATGATTTG
CCTATACCAACCTGCCTTTTTTTTTTCCGTCTTGCTGCTAGGTAGGGTTT
GCCTACAACGCCCACATCTGTTGTTTCTTTTTTCATGTTTTTCCTCGTCA
CGCTGCCGTGTGGCCCCGCCTGGTACGTTTCAAACACACGTAAAGACGTT
CGTGCGTATATGGAACCGAAGGGACGAAAACAGACAGGCAGACACAATGC
CACTCAGCCGCCGACCTTTTGCGGACAACGCAGTTGTAGGCCGCCAGAGA
CTCCCTGCTCAGGGCTGACTCCCTCCGCTACGAACACGTTTCGAAACGGA
CCCGGGCGCAATCACGGCTGTTGGTAAATAGAGGGGGGGTGCAGCGGACT
ATCTCGTGTGGATAGGTACCCTTTCGGCCGAAGATGACGTACACGTGTTC
TTCTTGAAGTAGTTTTCCCGGAGGATTCATGTTGAATTTGTTTTTCCAGC
GCTCGTGTTGGCTCCACGAGGTGATGAGGAAACGAGGGGATTTCGAACAA
GCGCGTCGTCGGTCGCTCGTGCGTTGTTTCGCAATGCAAACTGTGAGCGA
TGGCTACGATTTTTGTCGTACATAGCCGCAGATGAGCCCCCCATCACGAA
CGAAGCATCACCGCTACATTTCAACACCTCACCATACTTTTTACGTTGAG
CGGCAACCATGACGAGCGGAACTATTCAGCGCACATGTCCCCCCCCCACG
CATGCGAAAGGTCAACAAGGAGCTCGGCGAGCGGCGGCAGGCCGACAGGG
GCCCCGCAAGCGTCGCCTTCGGGGAAGAGGTGCTGCCGCCGCCCGGGGAA
ACCTTGAAGCAGGCGGAGTTCGTCGCGATCATGGAGGAGAGAGTTCAGGC
GGAGTACGCCAAGCTCGACGACTTCCATGAATCCAAGCAGAAATGATCGA
GGGTTGGATTCGATTTGCACGGGTTGGGCTGGGCGTCGTCTCTCATCACG
AGGCCGGTTGACCCCCCTCAGGAACAAGTAAAAACTATGTTCCCGCTTGG
TATGGTTGATATAGGCGGCGGTTGTGGCCGATTGTAGGTGTGTTGGCTGC
TGGTCAGCGTGCTGGTTTCGTTTTCTTTTTTGTCGTATCGCAAAGCGGAG
ACGGGAGCTACTTCCACCCCATCGGGGGGAGATGTGTGGTACGTACGTGA
GGTGTCCGTTGTGTATAGAGAGGCCCGATGCCGTCTGACCGTGGGCAGGG
GAAGGCAGAGAAGCGGCGCATCTATGTGCGGGCTTATTTGCGCGCGTTGC
TGTTTGCTCCAGCTGTTTTGAGAGGCTTGTGTCCGGAGTGGCAACCTTCG
TCATACGCGCGCGTTGGAACGGTGACATGCCTGCGTCGTTTTTTTTTGCG
AGGCCCAGTTTCGGTTCGTTTAGAGCGTATATAGATGTTGACGCAGGCGT
GGTGTTGTCCTCCAGCTGTACGTGCACCGGCACGTGCCCTGGCTGAAAAT
ATATAGGTAAACCGGCACTAGAGAGAGCCACCGGCAGAACTGACGAAACT
GGGCGTTTCCGACCCTCCCTGTGCTGAGCGATTTCGTGGGCACTATGCCG
CTGCT
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Coding sequence (CDS) from alignment at Scaffold_360:299626..304430+

>EsuBft2787_2a-0001 ID=EsuBft2787_2a-0001|Name=EsuBft2787_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=948bp|location=Sequence derived from alignment at Scaffold_360:299626..304430+ (Ectocarpus subulatus male Bft15b)
ATGAGATTACATTCTGCTACGAATTGGCGCGACTGCTTTTTCGCGGCGCC
ACCCCACGGCGTTTCGCGCTTGGGGTGCATGATCATGACGATGGTGCCCG
AGAACATGAAGAAGCCGTACGAGTTCGAGCTGTTCCACGAATCAACGAGG
GACCCGGTGGACCTCTACACGTGGGGGAACGACTTCTTCCGTCCCCTCAT
CGAGCTGGACAACTCGAGGCTCGAGGGCAAGGAGAACTTGGAGAAGATCG
CCGAGTACCTGGCCAAGGGAGAGAACGTCTTCCTCATGTCTAACCACCAG
ACGGAAGCCGATCCCCAGGTGATCAGCCTCCTGATGGAGCGTGAGGGGTA
CGGGGACGAGGCGTCGCGACTGATCAACGTGGCGGGGCACCGCGTGACCA
CGGACCCGTTGGCGATCCCCTTCAGCATGGGCAGAAACCTTTTCTGCATT
TTCTCCAAGAAGTACATGGAGACTCCCCCGGAACTCAAGGGCGAGAAGCA
GAAGCACAACGTCCGTACCTTGAAAAAGATGGCGGAGATGATGAGCGAAG
GGGGGCAATTCATCTGGGTGGCACCTAGCGGGGGCCGAGACAGGCCGGAT
CCGGAGACGGGCAAGTTCGTCGTGTCCCCTTACGACCCCAAGTCGGTGGA
GGTGTTCCGGCTTATGGCCGCAAAGGCCATGGGGAGGAACAAGACGGGGC
CGGTGACGCACTTCTTTCCCTTCGCGATGTGGACCAACAAGCTTGTGCCC
CCTCCGGACCAGGTCAACAAGGAGCTCGGCGAGCGGCGGCAGGCCGACAG
GGGCCCCGCAAGCGTCGCCTTCGGGGAAGAGGTGCTGCCGCCGCCCGGGG
AAACCTTGAAGCAGGCGGAGTTCGTCGCGATCATGGAGGAGAGAGTTCAG
GCGGAGTACGCCAAGCTCGACGACTTCCATGAATCCAAGCAGAAATGA
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