EsuBft419_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_3a-0001
Unique NameEsuBft419_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:13055..15325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft419_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length145
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004260.2
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_3aEsuBft419_3aEctocarpus subulatus male Bft15bgeneScaffold_360 13055..15325 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_3a-0001-exonagat-exon-28306Ectocarpus subulatus male Bft15bexonScaffold_360 13055..13680 -
EsuBft419_3a-0001-exonagat-exon-28307Ectocarpus subulatus male Bft15bexonScaffold_360 14009..14679 -
EsuBft419_3a-0001-exonEsuBft419_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 15169..15325 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_3a-0001-exonagat-three_prime_utr-15412Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 13055..13590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_3a-0001-cdsEsuBft419_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 13591..13680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_3a-0001EsuBft419_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 13591..15325 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_3a-0001 ID=EsuBft419_3a-0001|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1454bp|location=Sequence derived from alignment at Scaffold_360:13055..15325- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCACGACCGACCGCCTCGGCGTCGAAGGACTTCTCGGTCCAAGAG
CGGCGGCGGGGCAGGGATGGCGGCGGCGGCGGTGGGAGGACGGGGAGCGA
GGAAACGGGGCGGCGGCCTCGGCGGCGGTCGCGCTGTGCTCGACGTGGCC
CTGCCAGATGTGCAGGGCCTGAGTCTGGCGGCATCGACCAGCGGCTCATC
ATCTCGCAAAGACAGCAGTGACGACGACGGGGACGACGATGACAGTGGGT
ACGATGACCGAGATCGAGGTATCTCGGCCAGCCGAGAGCGGTGGACGAAG
GAGTGGAATCGAGCCATCGGCGCCGGCGACGACGATGACGGTCCCGGGCC
GGCAAGAGCAGGAGGTGATCGGCGGCACGGACACCAAGAGGACGCCGCTG
CTGCTTCTGTAGCGGTGGGGATGGAGACCCCCTCCACGTCGTTGACGAGA
AGGAAGAGAAGGAGTAAGAGGAGGGCGGCACCATCACGGGTGACCGTTCT
GGAAAACGAAGATGGCGGCAGACTTCTTGCAGCCGCAGCAGCAGCAGCAG
GAGAAGGGCGGCATGGGGGGTTGGGTAGCACGCAGCAAATGCAGTATGGG
TTTGAGACGATCGGGCGCGGGCGGGGCCCAGTGGACGAGGAGGAGGAGAA
GGAGGAGGAGGAGGAACAAGAGAGCGGGTACGGGGGGTCCTCCGAAGGAA
CATTTGAACCTGGGGGGGGCAGGTGGGGTGGGGTGGGTGGAAGCCAAGGC
CGTTATCGTGACGAAGAAGAGAAGGGGGAAGAGGAGGATGAGGAGGAAGA
GGACGACAGCTCGGAAACAGGAAGCGAGGGCGTGGGCGTGAGCGGGCTGC
CGATCGGCGAGGCTAGCCTGTCCTCTGGGGACGAGAGGATCTGGAGAACC
GCTGGTAGCAGAGCTTGAAGGAAGCCGCGGCGGATGTATAAGTAAAAAAA
CGTTAGTCGTGTATTTGAATACAGCAGTGAGTGAGGGTTGATGGAAAAGG
GACCCAATCCTTGCGGGACAGCCATAAACCAACAACACCACACCGGATAA
CACACTTTCATGTGTGCCACACAAACCACGCAACCGTTTGGATGGTATGG
GTGCATTTTTACTGTGTCGGCAAGGAAGGTTAGTCAGGATTTGTTGTGTC
TTTGCACTCCGTTCGTGTCTATTTATTTAGTGGTTGGTTTAAGACCAAAG
TATTCTGTGGGTTGGGGAGTAAGGGAAGATCTATAAGAGCATTATTTCTG
TAGCATTTGGATTTCCGTGTATCTAATATTGTTGTAGCTTAGGCTTTGTG
CCCCCAAGCGCAGAGAAGCAACCGAATCGAGGTGACGTACAATAGTATTT
ACAACGTGGTCAGCTCTGGTGCCGTTAGCGCCAAGCATGCTTGTTGCTGC
CTGCAGCAGTCTCCCGTCCATGGTATTTTTCTCATTTTGCGAGGATATCA
CGCG
back to top

protein sequence of EsuBft419_3a-0001

>EsuBft419_3 ID=EsuBft419_3|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=305bp
MFHDRPPRRRRTSRSKSGGGAGMAAAAVGGRGARKRGGGLGGGRAVLDVA
LPDVQGLSLAASTSGSSSRKDSSDDDGDDDDSGYDDRDRGISASRERWTK
EWNRAIGAGDDDDGPGPARAGGDRRHGHQEDAAAASVAVGMETPSTSLTR
RKRRSKRRAAPSRVTVLENEDGGRLLAAAAAAAGEGRHGGLGSTQQMQYG
FETIGRGRGPVDEEEEKEEEEEQESGYGGSSEGTFEPGGGRWGGVGGSQG
RYRDEEEKGEEEDEEEEDDSSETGSEGVGVSGLPIGEASLSSGDERIWRT
AGSRA
back to top

mRNA from alignment at Scaffold_360:13055..15325-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_3a-0001 ID=EsuBft419_3a-0001|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2271bp|location=Sequence derived from alignment at Scaffold_360:13055..15325- (Ectocarpus subulatus male Bft15b)
ATGTTCCACGACCGACCGCCTCGGCGTCGAAGGACTTCTCGGTCCAAGAG
CGGCGGCGGGGCAGGGATGGCGGCGGCGGCGGTGGGAGGACGGGGAGCGA
GGAAACGGGGCGGCGGCCTCGGCGGCGGTCGCGCTGTGCTCGACGTGGCC
CTGCCAGGTGCGGGTGCACTCGACGAACGGATGGGAATAGCGAGGCTCTC
TTTCCTTCCCTCGCTGCCCCCGACTGCTAGACGTAGAGCAGAAATACTGA
GTTGTTGTTGTAGATCCGTCGCTCGTTCTCGGTACGGTATGGCTGTTAAC
CTTACCCTTGACCTGTTCATATACCTTAACCGTTTCTCGGTCTCGGCACC
CCACCCTCCTCCCTAAACACATGTGTGACGGAGCCAAGAATGAACGGTAT
CTACGTTTCTTTGCTGACAAGAATTGATTGATTGCAAGCCGTAGCTTTGA
GCGGATTGGTGGATGCGATGTGCGTTTGTGTGTTTATCGCGGTGCTGGCA
ATGCACAGCGTGCTAATAGTTACGCCCGACGTACAGTTTCTGCAGGTGGT
CGGTGCAACGGCTATACATCTCGTTCTACCGAAACGTACCTGCTCGCCTT
AACCTGCTTCCGCATCGCCTGTACAACTGCTGTACGCACGCGGTAGATGT
GCAGGGCCTGAGTCTGGCGGCATCGACCAGCGGCTCATCATCTCGCAAAG
ACAGCAGTGACGACGACGGGGACGACGATGACAGTGGGTACGATGACCGA
GATCGAGGTATCTCGGCCAGCCGAGAGCGGTGGACGAAGGAGTGGAATCG
AGCCATCGGCGCCGGCGACGACGATGACGGTCCCGGGCCGGCAAGAGCAG
GAGGTGATCGGCGGCACGGACACCAAGAGGACGCCGCTGCTGCTTCTGTA
GCGGTGGGGATGGAGACCCCCTCCACGTCGTTGACGAGAAGGAAGAGAAG
GAGTAAGAGGAGGGCGGCACCATCACGGGTGACCGTTCTGGAAAACGAAG
ATGGCGGCAGACTTCTTGCAGCCGCAGCAGCAGCAGCAGGAGAAGGGCGG
CATGGGGGGTTGGGTAGCACGCAGCAAATGCAGTATGGGTTTGAGACGAT
CGGGCGCGGGCGGGGCCCAGTGGACGAGGAGGAGGAGAAGGAGGAGGAGG
AGGAACAAGAGAGCGGGTACGGGGGGTCCTCCGAAGGAACATTTGAACCT
GGGGGGGGCAGGTGGGGTGGGGTGGGTGGAAGCCAAGGCCGTTATCGTGA
CGAAGAAGAGAAGGGGGAAGAGGAGGATGAGGAGGAAGAGGACGACAGCT
CGGAAACAGGAAGCGAGGTTTGTTTTCATATATATATATATATATGGATT
GGCCCGCTGGTTGGTTGCTGCCTTTCGTGTCGAGTGCTCCGTTGTTTTGC
AGGGTGGCCTTCTTTTCTTTTAGAGGGGGAAGGCGGGGACGGACAGCCAA
TGTGCCCGGCGAGCTAGATTTCTACGGTGTGCTACTGGTGCCATCTCTGC
GTGTCTTTGTTCGCTTGTCGACACTGCTGCTGTGACCCTCAACGATCGGT
GCAAGTCGCGCCAAAATCATGTGCTCCGTTGCCGTTCCTAATACCTCTCA
CAACGCGTTTTGTATTCCTGAACCGGACGCTCTTTCTGGAATCAGGGCGT
GGGCGTGAGCGGGCTGCCGATCGGCGAGGCTAGCCTGTCCTCTGGGGACG
AGAGGATCTGGAGAACCGCTGGTAGCAGAGCTTGAAGGAAGCCGCGGCGG
ATGTATAAGTAAAAAAACGTTAGTCGTGTATTTGAATACAGCAGTGAGTG
AGGGTTGATGGAAAAGGGACCCAATCCTTGCGGGACAGCCATAAACCAAC
AACACCACACCGGATAACACACTTTCATGTGTGCCACACAAACCACGCAA
CCGTTTGGATGGTATGGGTGCATTTTTACTGTGTCGGCAAGGAAGGTTAG
TCAGGATTTGTTGTGTCTTTGCACTCCGTTCGTGTCTATTTATTTAGTGG
TTGGTTTAAGACCAAAGTATTCTGTGGGTTGGGGAGTAAGGGAAGATCTA
TAAGAGCATTATTTCTGTAGCATTTGGATTTCCGTGTATCTAATATTGTT
GTAGCTTAGGCTTTGTGCCCCCAAGCGCAGAGAAGCAACCGAATCGAGGT
GACGTACAATAGTATTTACAACGTGGTCAGCTCTGGTGCCGTTAGCGCCA
AGCATGCTTGTTGCTGCCTGCAGCAGTCTCCCGTCCATGGTATTTTTCTC
ATTTTGCGAGGATATCACGCG
back to top

Coding sequence (CDS) from alignment at Scaffold_360:13055..15325-

>EsuBft419_3a-0001 ID=EsuBft419_3a-0001|Name=EsuBft419_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=918bp|location=Sequence derived from alignment at Scaffold_360:13055..15325- (Ectocarpus subulatus male Bft15b)
ATGTTCCACGACCGACCGCCTCGGCGTCGAAGGACTTCTCGGTCCAAGAG
CGGCGGCGGGGCAGGGATGGCGGCGGCGGCGGTGGGAGGACGGGGAGCGA
GGAAACGGGGCGGCGGCCTCGGCGGCGGTCGCGCTGTGCTCGACGTGGCC
CTGCCAGATGTGCAGGGCCTGAGTCTGGCGGCATCGACCAGCGGCTCATC
ATCTCGCAAAGACAGCAGTGACGACGACGGGGACGACGATGACAGTGGGT
ACGATGACCGAGATCGAGGTATCTCGGCCAGCCGAGAGCGGTGGACGAAG
GAGTGGAATCGAGCCATCGGCGCCGGCGACGACGATGACGGTCCCGGGCC
GGCAAGAGCAGGAGGTGATCGGCGGCACGGACACCAAGAGGACGCCGCTG
CTGCTTCTGTAGCGGTGGGGATGGAGACCCCCTCCACGTCGTTGACGAGA
AGGAAGAGAAGGAGTAAGAGGAGGGCGGCACCATCACGGGTGACCGTTCT
GGAAAACGAAGATGGCGGCAGACTTCTTGCAGCCGCAGCAGCAGCAGCAG
GAGAAGGGCGGCATGGGGGGTTGGGTAGCACGCAGCAAATGCAGTATGGG
TTTGAGACGATCGGGCGCGGGCGGGGCCCAGTGGACGAGGAGGAGGAGAA
GGAGGAGGAGGAGGAACAAGAGAGCGGGTACGGGGGGTCCTCCGAAGGAA
CATTTGAACCTGGGGGGGGCAGGTGGGGTGGGGTGGGTGGAAGCCAAGGC
CGTTATCGTGACGAAGAAGAGAAGGGGGAAGAGGAGGATGAGGAGGAAGA
GGACGACAGCTCGGAAACAGGAAGCGAGGGCGTGGGCGTGAGCGGGCTGC
CGATCGGCGAGGCTAGCCTGTCCTCTGGGGACGAGAGGATCTGGAGAACC
GCTGGTAGCAGAGCTTGA
back to top