EsuBft1319_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1319_2a-0001
Unique NameEsuBft1319_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:22697..26422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1319_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length235
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1319_2aEsuBft1319_2aEctocarpus subulatus male Bft15bgeneScaffold_358 22697..26422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1319_2a-0001EsuBft1319_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 24467..26355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1319_2a-0001-exonagat-exon-36012Ectocarpus subulatus male Bft15bexonScaffold_358 22697..24523 -
EsuBft1319_2a-0001-exonEsuBft1319_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 25838..26291 -
EsuBft1319_2a-0001-exonagat-exon-36011Ectocarpus subulatus male Bft15bexonScaffold_358 26351..26422 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1319_2a-0001-exonagat-three_prime_utr-2947Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 22697..24466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1319_2a-0001-cdsEsuBft1319_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 24467..24523 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1319_2a-0001-exonagat-five_prime_utr-1941Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 26356..26422 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1319_2a-0001 ID=EsuBft1319_2a-0001|Name=EsuBft1319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2353bp|location=Sequence derived from alignment at Scaffold_358:22697..26422- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTCGTGGTCAATCTCGGCACTCGTGCCTGAACGGTAGACTGGCATCA
TCGGCAGAACATGAGCGATGAAGACAGCGGTGGGTCAAATGTTCGCGGCA
GACGGCCGTTCGTTCGTTGCGGGCAAGAACAGCGGGGGCAGGCAGGAGAC
TTACCGGTGCTCGGGCCATACCGTAGGCTGCAAAGCACAAGTCCGCGCCT
ACAAGGGTGCCGACGGAGTGTGGAAGGTGCACACGATTGACGCCGCACAC
ACCGACTGCTCCGGCGGCAATACGAAGGGGAGGACCGTTGCTCTCCAACA
CCTGGCCTCCACAGCCGTGAAGGACCATTCGTCCATGAATGGCAAGGAGC
TCAAGCGTAAGCTGGAGCGGAACACAGGGATCAATGTCGCCCACCGGACG
GCAAACCGGATGAAGATGACAGCAAGGGACGGCGACAAAGCGACGACGGC
GGCTGGGTACCAGCTGCTGGTTTTTTTCTGTGACCTTCTTCAACAGCAGT
GCCCTGGTTCGGTCGCGGAAACCCAGATTAACAATGGAATCATAGGGTCA
GAGAAAACTACCTGCATGTCTACGATTTCCTAGACAGCATATAGGGACAA
CTCTCGGGTGACAGGCTCAAAAGATCAGTATGGTAGCTGTCTTGTGTGTC
TCATATGTTATGTTGTGTAATTTCATGTCGTTAAATGTGCGAAGGGCAAG
GGAGAACATTTCTCATCATTGCCTCCTGATGACGTGGTCGCCGATAGAGG
CGTGTGGTTGATGAGGTTTCATAACCGACATGTGGGTGTGTGTTAAATGC
AGTGGGTGTGTTCACCTCTCTCGTCCGTGTGTAGGTAGGAGGTATGGCTA
CCTCTCCCATTTGTAGGCAGCGTGGACCATACTTGTAAATATAGTCTAGA
CAGAGTTCATCATTTCATGCATGTTACATCATTTGTGTTTGACAAGGGAG
GAATGAGAGGTTGTGCGTATGGGTACGGGGGTACTCCCTGTGTCCGTGTT
GTTCCCAGATGTTGCCGCATCAAGTGGCAGCATGTGTCATGGACAGGTAG
ACGTGGAAGGACGGCGACAGGTGAACGGCAGCAGTAGTATGTTGTGCATG
GTGGCATGTTGGGCTTGTGCAGAGGCGCAGTCCATCTTCGACCACACACA
AAAAAGTTTGCTCGTACCTGTGGGGATTTTTCGAAGTCCTGGGTCAGCCA
AGAGCAGCAGCAAGGAGCAAACGCAGTGCAGTATACTCCACAGCTTTACA
GTCCGTCCTCCTCAAGTCCTATCGGAGATGATTAATATCGCACAACGGCT
GGATCCGAAATGCCGGCTAGCTCCGCAATCCAAGAGAGGTGGGTGGCTGA
GCTAAAACCGGAATGACTGCATGCGTGCTCCTCTCAGCGACGTCGCTGGC
TGGCTCTTTGAAGTGCAGATTTCTGGTTCAGCGGAATTTGATTCCCAATT
CTTCGTTGTCACCTGGGTGTATGGGAATTTTTGAGAAAGGTGTACAGAAA
TTGATTATCCTAATTGCAAGGGACACGTTTCTTTTTCAGTGTTCCCCCTT
GCGGTTTCGACGGTTAAATATGCGGTTACCCACAGATTTTCGCATCGCTA
TAAGCTATCAGGCTCCTACAAAAGTATGCGTGTACAATTTTGGTAGCGCT
AGAAGCAATTTGAACATGATTGTTATGTCATTATTTATAAACAGGCGTTC
TTATTTTGCACATAGACATGTAACGATATTTGAACATAACACAACAACAC
TACTCCAGGAATTGCTCAACAAAGAAACGGGACACTACCCAATAAAGGAA
AAGATAATCGCACGCAGGCTAATCTACCAAAAAGTCATTCGTATCTACTC
GATTCCAAATACCCAACTCCACTTTCTTCCAGTATGAATTCCGCACCATA
GGTGCATTTACACCCACGATGTTTGCAGTCACTGGCGAGGTACGAAAAAA
GGTATACATGAAATTGTGTAAAGTATTACGTATAAGTCGACTAGAATAGA
AACGTGCAAGCATGTCAGCTATCAATCTGGCTGTGGCAGCTTGGAAAAAT
CGAATGTCAGTACATCTAATAGCAAATCGGCACATTTGACAGTGTAACGT
CGACATCTTACACCTAGTAGATAACACTGTTTCCCAATGTGGGAATGCCC
GATATTGCTTCAGCGTAGCCATATGTTGGCGCTTATTATACATACCGATA
CAAGTCTTACCAGGAATGTCTTGCCCTATTTGCATATCCAGAAAGTGTGC
TGATTCCCTACACTGTTCTTGGGTAACGCGAACGGGGTTGTCTATCTCAT
CACCATTCGAATCTATCACCATCGTTGGGTACATACCACCATATTGATTA
CCC
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protein sequence of EsuBft1319_2a-0001

>EsuBft1319_2 ID=EsuBft1319_2|Name=EsuBft1319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=171bp
MKTAVGQMFAADGRSFVAGKNSGGRQETYRCSGHTVGCKAQVRAYKGADG
VWKVHTIDAAHTDCSGGNTKGRTVALQHLASTAVKDHSSMNGKELKRKLE
RNTGINVAHRTANRMKMTARDGDKATTAAGYQLLVFFCDLLQQQCPGSVA
ETQINNGIIGSEKTTCMSTIS
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mRNA from alignment at Scaffold_358:22697..26422-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1319_2a-0001 ID=EsuBft1319_2a-0001|Name=EsuBft1319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3726bp|location=Sequence derived from alignment at Scaffold_358:22697..26422- (Ectocarpus subulatus male Bft15b)
TCTCTCGTGGTCAATCTCGGCACTCGTGCCTGAACGGTAGACTGGCATCA
TCGGCAGAACATGAGCGATGAAGTAGTGAACACCGCGGTCCTCGCGCAAG
GCGCGTGCTACTTCACCACCAGCCATGTTAGGACAGCGGTGGGTCAAATG
TTCGCGGCAGACGGCCGTTCGTTCGTTGCGGGCAAGAACAGCGGGGGCAG
GCAGGAGACTTACCGGTGCTCGGGCCATACCGTAGGCTGCAAAGCACAAG
TCCGCGCCTACAAGGGTGCCGACGGAGTGTGGAAGGTGCACACGATTGAC
GCCGCACACACCGACTGCTCCGGCGGCAATACGAAGGGGAGGACCGTTGC
TCTCCAACACCTGGCCTCCACAGCCGTGAAGGACCATTCGTCCATGAATG
GCAAGGAGCTCAAGCGTAAGCTGGAGCGGAACACAGGGATCAATGTCGCC
CACCGGACGGCAAACCGGATGAAGATGACAGCAAGGGACGGCGACAAAGC
GACGACGGCGGCTGGGTACCAGCTGCTGGTTTTTTTCTGTGACCTTCTTC
AACAGCAGTGCCCTGGTTCGGTCGCGGAAACCCAGGTGAGAGATGTTTTC
TCTCGACTCGTGGTCTGCGCATGCAGCAAAATGTGTGGCTAGGACCTTGC
TGATGCAACCGTGTGGTGTGTGGTGTCCACGGGCGACCGGTGTTGATGAT
ATGGCCACTACATGATGTACTTCAAAGAGCATAGCTCTCAACAGCACAGC
CCTCAACAGCACAGCTCTCAACAACAGCAGTAGCAGGGTAGTCTGTCTGC
AGCAGTGTGCAGTCTGCCTGTGTGTTCAGCGCCGATTGTTGGCGACCCCT
TCGTTTCCTTCCGTCCTCGCTGTACATACACCAGCGTTAGCTTGGAAGGT
ACCACACCGAGCCCAATTCGAAGCTCAACTACTCCACGACGAAGCGGGTT
GCCACCAGAAGATTCTGTCGCTCAGCCATTTTGATGACTCTTGATTGATT
ATGTCATGTCGATTGATGTCGATTGCATCGATTGCATTGTAATCTCCCCT
GATGATCGGTCAGGGGGGTCAGTGTCTTGTGCGACATAGATAGGGTGTAG
TATCTTCTGCCACATAGGTACCGTCCGTGTGTACTACATACAACAACACG
TGTGTGCTGCTGCTGCTCTGTTAATTTTGTTTGAAGTATGAAGCGTTGAT
GCCGGCCGTATGGTTCCCTCCCCTCACAGGTCAAATGCTGCTGTGCACTT
GGAACGACTTACCGTATATGACACCAGATAACACACCCCCTTGACCATTT
TTCGAAGCTCGATTTCTCAAGTGAAGTAACAGTCATAGCGCCGAAAACGG
CGGCGTTGGAACCGTCTCATCGAGAGCTTTTCGAAAATGTATCGTTTCGT
TCATGCATCCCCTTCGTCGTGGAGTAATCGAGCTTTGAAAATCGGTCCAG
GTGGTGTGTTATCTTGTGTCATATACGGTAATCTTGTTTTCATAGAAGAT
ATCATCAGAAGAACGCTATGTGTTTTATCCCCAACTATTTTTACTCCCTC
CCAAGTTTTAGACTCCTAATTTTATGTCCAAGTATCAAAGAGGTTCAAGG
AAAGCGACCCGAATAGGCTTGTAGATTTGGAACGGGCTGGTGCTTCGCTC
TCTGTCGCTACACCTCTGTCTTTCCTCTCTAGCCGCCTGCCCCCGCCTCG
CCTGTAGCTGGCTATCATCTCCCCATCTTCGTACCATTTGGTCTCGTATG
ATGCAAACGTGTTTTCAATTTTGTGGGCATTGTCTCTGTTTGTCGTTTGC
TGTCCTTCTCGTATGCTTCGCGCCAACACTGCATTTTTTTTTTTTTTCTT
AATATGACACAACGAGTCCATCTCTATCATAGAAAAGAGTCAGAGGCAGA
TTAACAATGGAATCATAGGGTCAGAGAAAACTACCTGCATGTCTACGATT
TCCTAGACAGCATATAGGGACAACTCTCGGGTGACAGGCTCAAAAGATCA
GTATGGTAGCTGTCTTGTGTGTCTCATATGTTATGTTGTGTAATTTCATG
TCGTTAAATGTGCGAAGGGCAAGGGAGAACATTTCTCATCATTGCCTCCT
GATGACGTGGTCGCCGATAGAGGCGTGTGGTTGATGAGGTTTCATAACCG
ACATGTGGGTGTGTGTTAAATGCAGTGGGTGTGTTCACCTCTCTCGTCCG
TGTGTAGGTAGGAGGTATGGCTACCTCTCCCATTTGTAGGCAGCGTGGAC
CATACTTGTAAATATAGTCTAGACAGAGTTCATCATTTCATGCATGTTAC
ATCATTTGTGTTTGACAAGGGAGGAATGAGAGGTTGTGCGTATGGGTACG
GGGGTACTCCCTGTGTCCGTGTTGTTCCCAGATGTTGCCGCATCAAGTGG
CAGCATGTGTCATGGACAGGTAGACGTGGAAGGACGGCGACAGGTGAACG
GCAGCAGTAGTATGTTGTGCATGGTGGCATGTTGGGCTTGTGCAGAGGCG
CAGTCCATCTTCGACCACACACAAAAAAGTTTGCTCGTACCTGTGGGGAT
TTTTCGAAGTCCTGGGTCAGCCAAGAGCAGCAGCAAGGAGCAAACGCAGT
GCAGTATACTCCACAGCTTTACAGTCCGTCCTCCTCAAGTCCTATCGGAG
ATGATTAATATCGCACAACGGCTGGATCCGAAATGCCGGCTAGCTCCGCA
ATCCAAGAGAGGTGGGTGGCTGAGCTAAAACCGGAATGACTGCATGCGTG
CTCCTCTCAGCGACGTCGCTGGCTGGCTCTTTGAAGTGCAGATTTCTGGT
TCAGCGGAATTTGATTCCCAATTCTTCGTTGTCACCTGGGTGTATGGGAA
TTTTTGAGAAAGGTGTACAGAAATTGATTATCCTAATTGCAAGGGACACG
TTTCTTTTTCAGTGTTCCCCCTTGCGGTTTCGACGGTTAAATATGCGGTT
ACCCACAGATTTTCGCATCGCTATAAGCTATCAGGCTCCTACAAAAGTAT
GCGTGTACAATTTTGGTAGCGCTAGAAGCAATTTGAACATGATTGTTATG
TCATTATTTATAAACAGGCGTTCTTATTTTGCACATAGACATGTAACGAT
ATTTGAACATAACACAACAACACTACTCCAGGAATTGCTCAACAAAGAAA
CGGGACACTACCCAATAAAGGAAAAGATAATCGCACGCAGGCTAATCTAC
CAAAAAGTCATTCGTATCTACTCGATTCCAAATACCCAACTCCACTTTCT
TCCAGTATGAATTCCGCACCATAGGTGCATTTACACCCACGATGTTTGCA
GTCACTGGCGAGGTACGAAAAAAGGTATACATGAAATTGTGTAAAGTATT
ACGTATAAGTCGACTAGAATAGAAACGTGCAAGCATGTCAGCTATCAATC
TGGCTGTGGCAGCTTGGAAAAATCGAATGTCAGTACATCTAATAGCAAAT
CGGCACATTTGACAGTGTAACGTCGACATCTTACACCTAGTAGATAACAC
TGTTTCCCAATGTGGGAATGCCCGATATTGCTTCAGCGTAGCCATATGTT
GGCGCTTATTATACATACCGATACAAGTCTTACCAGGAATGTCTTGCCCT
ATTTGCATATCCAGAAAGTGTGCTGATTCCCTACACTGTTCTTGGGTAAC
GCGAACGGGGTTGTCTATCTCATCACCATTCGAATCTATCACCATCGTTG
GGTACATACCACCATATTGATTACCC
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Coding sequence (CDS) from alignment at Scaffold_358:22697..26422-

>EsuBft1319_2a-0001 ID=EsuBft1319_2a-0001|Name=EsuBft1319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=516bp|location=Sequence derived from alignment at Scaffold_358:22697..26422- (Ectocarpus subulatus male Bft15b)
ATGAAGACAGCGGTGGGTCAAATGTTCGCGGCAGACGGCCGTTCGTTCGT
TGCGGGCAAGAACAGCGGGGGCAGGCAGGAGACTTACCGGTGCTCGGGCC
ATACCGTAGGCTGCAAAGCACAAGTCCGCGCCTACAAGGGTGCCGACGGA
GTGTGGAAGGTGCACACGATTGACGCCGCACACACCGACTGCTCCGGCGG
CAATACGAAGGGGAGGACCGTTGCTCTCCAACACCTGGCCTCCACAGCCG
TGAAGGACCATTCGTCCATGAATGGCAAGGAGCTCAAGCGTAAGCTGGAG
CGGAACACAGGGATCAATGTCGCCCACCGGACGGCAAACCGGATGAAGAT
GACAGCAAGGGACGGCGACAAAGCGACGACGGCGGCTGGGTACCAGCTGC
TGGTTTTTTTCTGTGACCTTCTTCAACAGCAGTGCCCTGGTTCGGTCGCG
GAAACCCAGATTAACAATGGAATCATAGGGTCAGAGAAAACTACCTGCAT
GTCTACGATTTCCTAG
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