EsuBft936_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft936_13a-0001
Unique Name	EsuBft936_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_350	contig	Scaffold_350:152917..153651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft936_13
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	73
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft936_13a	EsuBft936_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 152917..153651 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_13a-0001-exon	EsuBft936_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 152917..153651 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_13a-0001-cds	EsuBft936_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 152917..153507 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_13a-0001-exon	agat-three_prime_utr-23225	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 153508..153651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_13a-0001	EsuBft936_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 152917..153507 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:152917..153651+
coding sequence from alignment at Scaffold_350:152917..153651+

spliced messenger RNA

>EsuBft936_13a-0001 ID=EsuBft936_13a-0001|Name=EsuBft936_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=735bp|location=Sequence derived from alignment at Scaffold_350:152917..153651+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCAGTACTGGCACACGGACGAGGTGTCACGCCAGCATGGCAACTC
AGCTGAGTGCGACATGTGGAAGGCGAGTAAGTCTCCTGCAGCTCACCGCC
ACCCTCGGCGGCAGCTCACCAAGCCGGGCTGGGGCGATAATGTGTACGCC
AAATTTCTCAACGGGGCGTCTTACAAGAGCTTCAAGGAGCGACCAGGCGA
CGAATTCACTTACCCTGGCCGCACGCTCTTCCTCTCGACGCGGTGCAAGT
GCCTGGTCCTCCCTGCCATGGAGCAGTGCGCGTGCAAGATCCACTCGCAG
CAGATGCTATACATCGAGGCCCTGGCCAATGTCGACATAACCAGCCACGG
GGAGTGCCGGTGTCGATGGTGCAACGCAGATGGCGGCAGCAGGTGGCGAG
AAACGTGGAAGCACTTGGGCACATTCTCCCATGCGATTGCCTGCCCCAAG
GTCAACTTGCGGGCAACGGACCCGGAGGGTGACGGTTGGATGGGGCGGAA
ACCAGAGTGCAACGCTTTGGACTGCGCGAAGTGTGGGTTTGGGGGGGCTG
ACGGCGTTCCCATCTGCAGCAAGCTAAAGAACTCCGAGTAGACGGTGGTG
TGGAACATGTTCGAGGACGTGATCACTGCGCCTGCATCAGCAGATGGGAA
GATCAAGGCCAAGAAACTCGCCAACCAGACCGCGCCGAAGGAGGGTAAGC
TCTGCGATCTTTGGTCGGCGTTCAAAGAGCTCACC

protein sequence of EsuBft936_13a-0001

>EsuBft936_13 ID=EsuBft936_13|Name=EsuBft936_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=196bp
MRQYWHTDEVSRQHGNSAECDMWKASKSPAAHRHPRRQLTKPGWGDNVYA
KFLNGASYKSFKERPGDEFTYPGRTLFLSTRCKCLVLPAMEQCACKIHSQ
QMLYIEALANVDITSHGECRCRWCNADGGSRWRETWKHLGTFSHAIACPK
VNLRATDPEGDGWMGRKPECNALDCAKCGFGGADGVPICSKLKNSE

mRNA from alignment at Scaffold_350:152917..153651+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft936_13a-0001 ID=EsuBft936_13a-0001|Name=EsuBft936_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=735bp|location=Sequence derived from alignment at Scaffold_350:152917..153651+ (Ectocarpus subulatus male Bft15b)
ATGAGGCAGTACTGGCACACGGACGAGGTGTCACGCCAGCATGGCAACTC
AGCTGAGTGCGACATGTGGAAGGCGAGTAAGTCTCCTGCAGCTCACCGCC
ACCCTCGGCGGCAGCTCACCAAGCCGGGCTGGGGCGATAATGTGTACGCC
AAATTTCTCAACGGGGCGTCTTACAAGAGCTTCAAGGAGCGACCAGGCGA
CGAATTCACTTACCCTGGCCGCACGCTCTTCCTCTCGACGCGGTGCAAGT
GCCTGGTCCTCCCTGCCATGGAGCAGTGCGCGTGCAAGATCCACTCGCAG
CAGATGCTATACATCGAGGCCCTGGCCAATGTCGACATAACCAGCCACGG
GGAGTGCCGGTGTCGATGGTGCAACGCAGATGGCGGCAGCAGGTGGCGAG
AAACGTGGAAGCACTTGGGCACATTCTCCCATGCGATTGCCTGCCCCAAG
GTCAACTTGCGGGCAACGGACCCGGAGGGTGACGGTTGGATGGGGCGGAA
ACCAGAGTGCAACGCTTTGGACTGCGCGAAGTGTGGGTTTGGGGGGGCTG
ACGGCGTTCCCATCTGCAGCAAGCTAAAGAACTCCGAGTAGACGGTGGTG
TGGAACATGTTCGAGGACGTGATCACTGCGCCTGCATCAGCAGATGGGAA
GATCAAGGCCAAGAAACTCGCCAACCAGACCGCGCCGAAGGAGGGTAAGC
TCTGCGATCTTTGGTCGGCGTTCAAAGAGCTCACC

Coding sequence (CDS) from alignment at Scaffold_350:152917..153651+

>EsuBft936_13a-0001 ID=EsuBft936_13a-0001|Name=EsuBft936_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=591bp|location=Sequence derived from alignment at Scaffold_350:152917..153651+ (Ectocarpus subulatus male Bft15b)
ATGAGGCAGTACTGGCACACGGACGAGGTGTCACGCCAGCATGGCAACTC
AGCTGAGTGCGACATGTGGAAGGCGAGTAAGTCTCCTGCAGCTCACCGCC
ACCCTCGGCGGCAGCTCACCAAGCCGGGCTGGGGCGATAATGTGTACGCC
AAATTTCTCAACGGGGCGTCTTACAAGAGCTTCAAGGAGCGACCAGGCGA
CGAATTCACTTACCCTGGCCGCACGCTCTTCCTCTCGACGCGGTGCAAGT
GCCTGGTCCTCCCTGCCATGGAGCAGTGCGCGTGCAAGATCCACTCGCAG
CAGATGCTATACATCGAGGCCCTGGCCAATGTCGACATAACCAGCCACGG
GGAGTGCCGGTGTCGATGGTGCAACGCAGATGGCGGCAGCAGGTGGCGAG
AAACGTGGAAGCACTTGGGCACATTCTCCCATGCGATTGCCTGCCCCAAG
GTCAACTTGCGGGCAACGGACCCGGAGGGTGACGGTTGGATGGGGCGGAA
ACCAGAGTGCAACGCTTTGGACTGCGCGAAGTGTGGGTTTGGGGGGGCTG
ACGGCGTTCCCATCTGCAGCAAGCTAAAGAACTCCGAGTAG